Wall clock time and date at job start Mon Mar 30 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47226 * 2 1 4 4 H 1.09003 * 109.47341 * 57.39627 * 3 2 1 5 5 C 1.50709 * 109.47029 * 177.39698 * 3 2 1 6 6 H 1.07996 * 119.99960 * 114.85022 * 5 3 2 7 7 C 1.37879 * 119.99716 * 294.84560 * 5 3 2 8 8 N 1.31513 * 119.99516 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 120.00098 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.46872 * 89.99978 * 9 7 5 11 11 H 1.48502 * 109.46844 * 209.99969 * 9 7 5 12 12 H 1.48494 * 109.47153 * 329.99866 * 9 7 5 13 13 N 1.46902 * 109.46976 * 297.39356 * 3 2 1 14 14 C 1.47011 * 111.00045 * 301.39190 * 13 3 2 15 15 C 1.53102 * 109.25396 * 177.60728 * 14 13 3 16 16 C 1.52997 * 109.50901 * 296.91311 * 15 14 13 17 17 C 1.53003 * 109.50437 * 176.78496 * 15 14 13 18 18 O 1.43019 * 109.25960 * 56.85388 * 15 14 13 19 19 C 1.43015 * 113.73489 * 301.32736 * 18 15 14 20 20 C 1.47017 * 110.99736 * 177.75705 * 13 3 2 21 21 H 1.08997 * 109.50734 * 62.41526 * 20 13 3 22 22 C 1.53006 * 109.50920 * 302.32984 * 20 13 3 23 23 C 1.53001 * 109.47269 * 176.72680 * 22 20 13 24 24 H 1.09003 * 109.47204 * 185.05885 * 1 2 3 25 25 H 1.09000 * 109.47289 * 305.06008 * 1 2 3 26 26 H 1.09009 * 109.47167 * 65.06002 * 1 2 3 27 27 H 1.09000 * 109.47175 * 239.99512 * 2 1 3 28 28 H 1.09002 * 109.47096 * 119.99997 * 2 1 3 29 29 H 0.97002 * 119.99828 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.50755 * 57.67587 * 14 13 3 31 31 H 1.09001 * 109.50823 * 297.54036 * 14 13 3 32 32 H 1.08997 * 109.46956 * 179.78254 * 16 15 14 33 33 H 1.08993 * 109.47173 * 299.78697 * 16 15 14 34 34 H 1.08998 * 109.46800 * 59.78249 * 16 15 14 35 35 H 1.09004 * 109.46893 * 300.21810 * 17 15 14 36 36 H 1.08995 * 109.47368 * 60.21570 * 17 15 14 37 37 H 1.09003 * 109.47049 * 180.21972 * 17 15 14 38 38 H 1.09004 * 109.50635 * 178.60951 * 19 18 15 39 39 H 1.09001 * 109.50573 * 298.73716 * 19 18 15 40 40 H 1.09002 * 109.46749 * 296.72572 * 22 20 13 41 41 H 1.08993 * 109.46762 * 56.72634 * 22 20 13 42 42 H 1.08996 * 109.46939 * 65.54805 * 23 22 20 43 43 H 1.08997 * 109.46956 * 185.54974 * 23 22 20 44 44 H 1.09006 * 109.46848 * 305.55237 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6390 1.9696 0.8657 5 6 3.5457 1.4429 0.0645 6 1 4.1216 1.8232 -0.7661 7 6 4.1878 0.9578 1.1841 8 7 5.5017 0.9587 1.2406 9 14 3.1915 0.3008 2.6212 10 1 2.9517 -1.1527 2.4337 11 1 3.9409 0.5200 3.8843 12 1 1.8900 1.0127 2.6878 13 7 1.6024 2.1165 -1.2297 14 6 2.0981 1.4126 -2.4213 15 6 1.5707 2.1122 -3.6769 16 6 0.0436 2.0240 -3.7076 17 6 2.1477 1.4331 -4.9206 18 8 1.9694 3.4855 -3.6544 19 6 1.5032 4.2015 -2.5075 20 6 2.0298 3.5231 -1.2401 21 1 3.1186 3.5728 -1.2255 22 6 1.4694 4.2366 -0.0081 23 6 1.9813 5.6781 0.0234 24 1 -0.3634 -1.0237 0.0906 25 1 -0.3634 0.5903 0.8412 26 1 -0.3634 0.4334 -0.9319 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.9535 0.6171 2.0281 30 1 1.7486 0.3803 -2.4060 31 1 3.1880 1.4285 -2.4264 32 1 -0.3314 2.5256 -4.5997 33 1 -0.2596 0.9772 -3.7248 34 1 -0.3661 2.5063 -2.8202 35 1 3.2357 1.4949 -4.8966 36 1 1.8436 0.3865 -4.9372 37 1 1.7749 1.9341 -5.8140 38 1 1.8654 5.2289 -2.5478 39 1 0.4133 4.1994 -2.4954 40 1 0.3803 4.2387 -0.0536 41 1 1.7944 3.7158 0.8925 42 1 1.5752 6.2265 -0.8265 43 1 1.6633 6.1563 0.9498 44 1 3.0700 5.6783 -0.0307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403813805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:47 Heat of formation + Delta-G solvation = -49.784470 kcal Electronic energy + Delta-G solvation = -21570.088933 eV Core-core repulsion = 18715.285672 eV Total energy + Delta-G solvation = -2854.803261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78916 -36.49650 -34.49087 -32.73845 -31.95600 -30.99988 -27.90952 -26.99883 -26.65895 -24.91089 -23.27347 -22.33595 -20.48647 -19.48168 -18.65893 -16.81786 -16.02335 -15.59105 -14.67890 -14.54399 -14.36346 -14.00478 -13.61246 -13.38753 -13.04063 -12.67133 -12.33078 -12.30584 -12.23242 -11.91553 -11.83298 -11.65808 -11.52417 -11.34065 -11.18799 -10.86871 -10.70901 -10.64107 -10.48918 -10.18726 -10.03797 -9.77800 -9.60196 -9.53655 -9.31024 -8.76310 -8.58257 -7.16659 -6.12522 -4.12823 3.23363 3.34157 3.35176 4.18366 4.35606 4.73520 5.16455 5.25921 5.36729 5.44045 5.46324 5.55320 5.72369 5.80615 5.87968 5.92733 5.93721 5.96857 6.00304 6.05259 6.12765 6.18169 6.19064 6.25934 6.34565 6.40536 6.46273 6.53030 6.63465 6.66582 6.70021 6.76959 6.80735 6.92649 6.95190 7.12230 7.23824 7.55397 7.70954 8.05975 8.11460 8.44268 8.90578 9.50775 11.00331 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.009105 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.145036 B = 3074.580830 C = 3476.642921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.177 3.823 4 H 0.047 0.953 5 C -0.540 4.540 6 H 0.075 0.925 7 C 0.076 3.924 8 N -0.897 5.897 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.263 1.263 13 N -0.518 5.518 14 C 0.036 3.964 15 C 0.110 3.890 16 C -0.163 4.163 17 C -0.135 4.135 18 O -0.383 6.383 19 C 0.068 3.932 20 C 0.057 3.943 21 H 0.061 0.939 22 C -0.113 4.113 23 C -0.149 4.149 24 H 0.032 0.968 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.097 3.266 -6.452 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.069 3.931 4 H 0.064 0.936 5 C -0.579 4.579 6 H 0.093 0.907 7 C -0.127 4.127 8 N -0.535 5.535 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.188 1.188 13 N -0.242 5.242 14 C -0.092 4.092 15 C 0.071 3.929 16 C -0.221 4.221 17 C -0.193 4.193 18 O -0.302 6.302 19 C -0.009 4.009 20 C -0.052 4.052 21 H 0.079 0.921 22 C -0.151 4.151 23 C -0.207 4.207 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.349 3.291 -6.495 12.653 hybrid contribution 0.490 -0.625 1.209 1.447 sum -9.859 2.666 -5.286 11.500 Atomic orbital electron populations 1.21730 0.97436 0.99125 1.01669 1.21938 0.93909 0.99464 1.00726 1.19825 0.94283 0.90175 0.88806 0.93580 1.21588 0.90357 1.42163 1.03783 0.90674 1.24953 0.94615 0.95039 0.98107 1.69919 1.07622 1.46471 1.29488 0.86944 0.80591 0.79618 0.81998 1.20441 1.22317 1.18755 1.62630 1.57922 1.00890 1.02716 1.22608 0.99305 0.97914 0.89399 1.21607 0.93741 0.82243 0.95308 1.22237 0.95901 1.02004 1.01934 1.21712 1.01685 0.99688 0.96227 1.87940 1.76566 1.22230 1.43488 1.22750 0.98228 0.94912 0.85003 1.22091 0.99426 0.89637 0.94044 0.92094 1.21481 0.99793 0.94879 0.98921 1.21785 1.01599 0.96669 1.00657 0.94922 0.93861 0.92225 0.92383 0.93452 0.92720 0.90491 0.93015 0.93353 0.92234 0.90973 0.91976 0.91379 0.92348 0.89571 0.93103 0.92406 0.90584 0.93326 0.93196 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.71 37.16 0.36 -2.14 16 2 C -0.12 -2.57 4.69 -26.74 -0.13 -2.69 16 3 C 0.18 3.95 1.02 -68.86 -0.07 3.88 16 4 H 0.05 1.09 4.76 -51.93 -0.25 0.84 16 5 C -0.54 -14.41 7.61 -34.43 -0.26 -14.67 16 6 H 0.08 2.24 6.05 -52.49 -0.32 1.92 16 7 C 0.08 2.11 5.45 -17.82 -0.10 2.02 16 8 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 9 Si 0.88 21.42 24.66 -169.99 -4.19 17.23 16 10 H -0.28 -6.66 6.86 56.52 0.39 -6.28 16 11 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.26 -6.11 6.40 56.52 0.36 -5.75 16 13 N -0.52 -10.11 3.36 -219.78 -0.74 -10.85 16 14 C 0.04 0.69 3.67 -3.71 -0.01 0.68 16 15 C 0.11 1.80 1.11 -90.57 -0.10 1.70 16 16 C -0.16 -2.33 8.17 37.16 0.30 -2.03 16 17 C -0.14 -1.90 8.85 37.16 0.33 -1.57 16 18 O -0.38 -6.82 10.28 -35.23 -0.36 -7.18 16 19 C 0.07 1.11 5.53 37.21 0.21 1.32 16 20 C 0.06 1.08 1.75 -67.60 -0.12 0.96 16 21 H 0.06 1.37 6.79 -51.93 -0.35 1.02 16 22 C -0.11 -1.94 5.22 -26.73 -0.14 -2.08 16 23 C -0.15 -2.17 9.49 37.16 0.35 -1.82 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.00 7.83 -51.92 -0.41 0.59 16 27 H 0.06 1.21 6.19 -51.93 -0.32 0.89 16 28 H 0.05 1.06 3.95 -51.93 -0.21 0.86 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.08 1.42 6.10 -51.93 -0.32 1.10 16 31 H 0.05 1.15 6.54 -51.93 -0.34 0.81 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.09 6.13 -51.93 -0.32 0.78 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.28 6.82 -51.93 -0.35 0.92 16 39 H 0.05 0.78 6.49 -51.93 -0.34 0.45 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.50 6.14 -51.93 -0.32 1.18 16 42 H 0.05 0.61 6.89 -51.93 -0.36 0.26 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -28.69 315.34 -6.75 -35.44 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.61 Total: 3.23 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 0.62 Total: -16.46 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.04 Total: -37.01 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.36 Total: -7.18 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.19 Total: 17.23 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.69 -6.75 -35.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403813805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.344 kcal (2) G-P(sol) polarization free energy of solvation -28.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds