Wall clock time and date at job start Mon Mar 30 2020 07:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46944 * 2 1 4 4 C 1.52997 * 109.46835 * 240.00451 * 2 1 3 5 5 C 1.53002 * 109.47173 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46996 * 299.99728 * 5 4 2 7 7 C 1.52997 * 109.47366 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47153 * 59.99584 * 5 4 2 9 9 C 1.53007 * 109.47031 * 300.00310 * 8 5 4 10 10 C 1.53006 * 109.47095 * 299.99842 * 9 8 5 11 11 O 1.42905 * 109.47062 * 305.93550 * 10 9 8 12 12 N 1.46900 * 109.46692 * 180.02562 * 9 8 5 13 13 C 1.46908 * 110.99491 * 184.79741 * 12 9 8 14 14 C 1.50701 * 109.46846 * 175.18103 * 13 12 9 15 15 H 1.08004 * 119.99994 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99955 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99991 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00251 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46720 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47167 * 119.99598 * 18 16 14 21 21 H 1.48500 * 109.47032 * 240.00099 * 18 16 14 22 22 C 1.52992 * 109.47267 * 120.00038 * 2 1 3 23 23 H 1.09004 * 109.47215 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47219 * 299.99642 * 1 2 3 25 25 H 1.08999 * 109.47729 * 59.99885 * 1 2 3 26 26 H 1.09002 * 109.47736 * 59.99417 * 4 2 1 27 27 H 1.09008 * 109.46776 * 299.99303 * 4 2 1 28 28 H 1.08996 * 109.46944 * 139.59383 * 6 5 4 29 29 H 1.08996 * 109.47110 * 259.60399 * 6 5 4 30 30 H 1.09002 * 109.46609 * 19.59332 * 6 5 4 31 31 H 1.08995 * 109.47168 * 299.99758 * 7 5 4 32 32 H 1.08999 * 109.46810 * 60.00034 * 7 5 4 33 33 H 1.09003 * 109.46821 * 179.97438 * 7 5 4 34 34 H 1.09003 * 109.47127 * 180.02562 * 8 5 4 35 35 H 1.08995 * 109.47219 * 60.00340 * 8 5 4 36 36 H 1.09005 * 109.46918 * 65.93162 * 10 9 8 37 37 H 1.08997 * 109.46807 * 185.93293 * 10 9 8 38 38 H 0.96701 * 113.99602 * 180.02562 * 11 10 9 39 39 H 1.00894 * 111.00142 * 60.84760 * 12 9 8 40 40 H 1.08999 * 109.47292 * 295.18111 * 13 12 9 41 41 H 1.08997 * 109.46962 * 55.18626 * 13 12 9 42 42 H 0.97005 * 120.00247 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.47621 * 60.00246 * 22 2 1 44 44 H 1.09001 * 109.47251 * 299.99738 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5699 -0.7206 -1.2497 6 6 4.0794 0.7221 -1.2500 7 6 4.0799 -1.4423 -2.4986 8 6 4.0805 -1.4415 -0.0005 9 6 3.5705 -0.7203 1.2488 10 6 4.0800 0.7225 1.2485 11 8 5.5022 0.7253 1.1089 12 7 4.0613 -1.4121 2.4482 13 6 3.4989 -0.8155 3.6672 14 6 3.9289 -1.6218 4.8655 15 1 4.5574 -2.4903 4.7347 16 6 3.5200 -1.2507 6.1289 17 7 2.7550 -0.1929 6.2882 18 14 4.0535 -2.2497 7.6144 19 1 4.9048 -3.3822 7.1694 20 1 4.8255 -1.3841 8.5417 21 1 2.8539 -2.7774 8.3128 22 6 2.0400 -0.7212 1.2492 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6765 -0.2074 -2.1393 27 1 1.6766 -1.7489 -1.2492 28 1 4.9384 0.8042 -0.5841 29 1 4.3750 1.0028 -2.2609 30 1 3.2875 1.3871 -0.9052 31 1 3.7170 -2.4701 -2.4980 32 1 3.7161 -0.9291 -3.3888 33 1 5.1699 -1.4415 -2.4991 34 1 5.1705 -1.4408 -0.0005 35 1 3.7176 -2.4693 -0.0002 36 1 3.6321 1.2657 0.4164 37 1 3.8060 1.2047 2.1868 38 1 5.8948 1.6090 1.1012 39 1 5.0698 -1.4128 2.4780 40 1 3.8587 0.2083 3.7700 41 1 2.4109 -0.8135 3.6021 42 1 2.4676 0.0685 7.1770 43 1 1.6767 -1.7489 1.2492 44 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408466492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:58 Heat of formation + Delta-G solvation = -41.646420 kcal Electronic energy + Delta-G solvation = -21079.894112 eV Core-core repulsion = 18225.443743 eV Total energy + Delta-G solvation = -2854.450369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.61623 -36.30521 -35.08718 -33.60758 -32.49080 -29.63524 -27.98793 -26.55028 -26.27266 -25.73793 -24.74053 -21.87574 -20.56384 -18.95438 -17.88653 -17.13284 -16.45970 -15.39148 -15.02118 -14.64910 -14.50063 -14.31122 -13.92204 -13.52744 -12.97169 -12.80669 -12.54597 -12.26374 -12.08011 -11.87975 -11.83572 -11.61516 -11.34073 -11.30128 -11.05298 -10.83401 -10.67539 -10.57683 -10.38558 -10.22135 -10.14644 -9.95919 -9.65669 -9.41074 -9.11472 -9.01069 -8.39772 -7.12924 -5.98391 -3.98503 3.33673 3.40774 3.46714 4.46100 4.58405 4.83289 4.85480 4.92561 5.19073 5.34017 5.37413 5.43575 5.56052 5.59433 5.62640 5.70500 5.76160 5.85768 5.91262 5.94681 5.97188 6.01612 6.06978 6.10544 6.12091 6.26475 6.32749 6.33856 6.37526 6.53523 6.61381 6.66555 6.77065 6.85501 6.89229 7.37233 7.52044 7.87188 7.92433 8.21764 8.56198 8.73788 9.11559 9.65808 11.12654 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027779 B = 0.005899 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.708232 B = 4745.592911 C = 5114.218320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.069 0.931 4 C -0.102 4.102 5 C -0.060 4.060 6 C -0.184 4.184 7 C -0.137 4.137 8 C -0.087 4.087 9 C 0.127 3.873 10 C 0.005 3.995 11 O -0.559 6.559 12 N -0.678 5.678 13 C 0.190 3.810 14 C -0.507 4.507 15 H 0.061 0.939 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.101 4.101 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.369 0.631 39 H 0.335 0.665 40 H -0.014 1.014 41 H 0.032 0.968 42 H 0.259 0.741 43 H 0.071 0.929 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 2.921 -16.265 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.139 4.139 5 C -0.061 4.061 6 C -0.239 4.239 7 C -0.194 4.194 8 C -0.125 4.125 9 C 0.035 3.965 10 C -0.074 4.074 11 O -0.363 6.363 12 N -0.307 5.307 13 C 0.064 3.936 14 C -0.545 4.545 15 H 0.079 0.921 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.139 4.139 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.215 0.785 39 H 0.152 0.848 40 H 0.004 0.996 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.026 1.845 -16.147 16.284 hybrid contribution 0.710 1.044 1.077 1.659 sum -0.317 2.890 -15.070 15.348 Atomic orbital electron populations 1.21810 0.95502 1.01747 1.01220 1.21296 0.95187 0.99720 0.95412 0.91251 1.21685 0.94715 1.00504 0.97002 1.20460 0.94798 0.95629 0.95171 1.23050 1.03393 0.95674 1.01806 1.21869 1.00844 0.99969 0.96724 1.21529 1.00507 0.98551 0.91880 1.20789 0.94100 0.89293 0.92319 1.24030 0.80901 1.01201 1.01224 1.86434 1.21514 1.33098 1.95275 1.60774 1.12919 1.55319 1.01726 1.19631 0.95639 0.92722 0.85642 1.21262 1.30658 1.11867 0.90755 0.92065 1.24972 0.95365 0.95298 0.99029 1.69968 1.36075 1.25496 1.22555 0.86464 0.78344 0.80144 0.82596 1.19683 1.21187 1.21082 1.21654 0.93840 1.01419 0.96960 0.92728 0.92605 0.93239 0.92680 0.92056 0.88251 0.94323 0.92179 0.92961 0.93242 0.92809 0.91650 0.91979 0.90300 0.93690 0.78508 0.84805 0.99647 0.95005 0.93130 0.91029 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 37.16 0.34 -1.44 16 2 C -0.10 -1.32 2.36 -90.63 -0.21 -1.53 16 3 H 0.07 0.93 5.05 -51.93 -0.26 0.66 16 4 C -0.10 -1.25 3.96 -26.73 -0.11 -1.36 16 5 C -0.06 -0.76 0.77 -154.50 -0.12 -0.88 16 6 C -0.18 -2.22 7.27 37.16 0.27 -1.95 16 7 C -0.14 -1.53 8.22 37.16 0.31 -1.23 16 8 C -0.09 -1.35 3.78 -26.73 -0.10 -1.45 16 9 C 0.13 2.26 0.53 -131.57 -0.07 2.19 16 10 C 0.00 0.08 4.70 37.16 0.17 0.25 16 11 O -0.56 -8.55 10.13 -35.23 -0.36 -8.90 16 12 N -0.68 -14.98 6.04 -101.18 -0.61 -15.59 16 13 C 0.19 5.00 4.66 -4.97 -0.02 4.98 16 14 C -0.51 -14.67 9.36 -34.44 -0.32 -14.99 16 15 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 18 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.10 -1.74 3.64 -26.71 -0.10 -1.84 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.10 1.29 3.79 -49.96 -0.19 1.10 16 29 H 0.04 0.42 7.70 -51.93 -0.40 0.02 16 30 H 0.06 0.72 4.37 -51.93 -0.23 0.49 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.50 8.13 -51.93 -0.42 0.07 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 1.07 7.53 -51.93 -0.39 0.68 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.11 2.51 -52.03 -0.13 0.98 16 37 H 0.04 0.87 6.35 -51.93 -0.33 0.54 16 38 H 0.37 4.07 9.12 47.67 0.43 4.50 16 39 H 0.33 7.52 8.41 -39.30 -0.33 7.19 16 40 H -0.01 -0.40 6.54 -51.93 -0.34 -0.74 16 41 H 0.03 0.89 5.95 -51.93 -0.31 0.58 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.42 6.23 -51.93 -0.32 1.09 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -30.52 315.31 -7.13 -37.65 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.57 Total: 9.18 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -0.06 Total: -17.78 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.12 Total: -41.98 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.36 Total: -8.90 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.52 -7.13 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408466492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.997 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds