Wall clock time and date at job start Mon Mar 30 2020 07:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46944 * 2 1 4 4 C 1.52997 * 109.46835 * 240.00451 * 2 1 3 5 5 C 1.53002 * 109.47173 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46996 * 299.99728 * 5 4 2 7 7 C 1.52997 * 109.47366 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47153 * 59.99584 * 5 4 2 9 9 C 1.53007 * 109.47031 * 300.00310 * 8 5 4 10 10 C 1.53006 * 109.47095 * 299.99842 * 9 8 5 11 11 O 1.42905 * 109.47062 * 305.93550 * 10 9 8 12 12 N 1.46900 * 109.46692 * 180.02562 * 9 8 5 13 13 C 1.46908 * 110.99491 * 184.79741 * 12 9 8 14 14 C 1.50701 * 109.46846 * 175.18103 * 13 12 9 15 15 H 1.08004 * 119.99994 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99955 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99991 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00251 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46720 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47167 * 119.99598 * 18 16 14 21 21 H 1.48500 * 109.47032 * 240.00099 * 18 16 14 22 22 C 1.52992 * 109.47267 * 120.00038 * 2 1 3 23 23 H 1.09004 * 109.47215 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47219 * 299.99642 * 1 2 3 25 25 H 1.08999 * 109.47729 * 59.99885 * 1 2 3 26 26 H 1.09002 * 109.47736 * 59.99417 * 4 2 1 27 27 H 1.09008 * 109.46776 * 299.99303 * 4 2 1 28 28 H 1.08996 * 109.46944 * 139.59383 * 6 5 4 29 29 H 1.08996 * 109.47110 * 259.60399 * 6 5 4 30 30 H 1.09002 * 109.46609 * 19.59332 * 6 5 4 31 31 H 1.08995 * 109.47168 * 299.99758 * 7 5 4 32 32 H 1.08999 * 109.46810 * 60.00034 * 7 5 4 33 33 H 1.09003 * 109.46821 * 179.97438 * 7 5 4 34 34 H 1.09003 * 109.47127 * 180.02562 * 8 5 4 35 35 H 1.08995 * 109.47219 * 60.00340 * 8 5 4 36 36 H 1.09005 * 109.46918 * 65.93162 * 10 9 8 37 37 H 1.08997 * 109.46807 * 185.93293 * 10 9 8 38 38 H 0.96701 * 113.99602 * 180.02562 * 11 10 9 39 39 H 1.00894 * 111.00142 * 60.84760 * 12 9 8 40 40 H 1.08999 * 109.47292 * 295.18111 * 13 12 9 41 41 H 1.08997 * 109.46962 * 55.18626 * 13 12 9 42 42 H 0.97005 * 120.00247 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.47621 * 60.00246 * 22 2 1 44 44 H 1.09001 * 109.47251 * 299.99738 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5699 -0.7206 -1.2497 6 6 4.0794 0.7221 -1.2500 7 6 4.0799 -1.4423 -2.4986 8 6 4.0805 -1.4415 -0.0005 9 6 3.5705 -0.7203 1.2488 10 6 4.0800 0.7225 1.2485 11 8 5.5022 0.7253 1.1089 12 7 4.0613 -1.4121 2.4482 13 6 3.4989 -0.8155 3.6672 14 6 3.9289 -1.6218 4.8655 15 1 4.5574 -2.4903 4.7347 16 6 3.5200 -1.2507 6.1289 17 7 2.7550 -0.1929 6.2882 18 14 4.0535 -2.2497 7.6144 19 1 4.9048 -3.3822 7.1694 20 1 4.8255 -1.3841 8.5417 21 1 2.8539 -2.7774 8.3128 22 6 2.0400 -0.7212 1.2492 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6765 -0.2074 -2.1393 27 1 1.6766 -1.7489 -1.2492 28 1 4.9384 0.8042 -0.5841 29 1 4.3750 1.0028 -2.2609 30 1 3.2875 1.3871 -0.9052 31 1 3.7170 -2.4701 -2.4980 32 1 3.7161 -0.9291 -3.3888 33 1 5.1699 -1.4415 -2.4991 34 1 5.1705 -1.4408 -0.0005 35 1 3.7176 -2.4693 -0.0002 36 1 3.6321 1.2657 0.4164 37 1 3.8060 1.2047 2.1868 38 1 5.8948 1.6090 1.1012 39 1 5.0698 -1.4128 2.4780 40 1 3.8587 0.2083 3.7700 41 1 2.4109 -0.8135 3.6021 42 1 2.4676 0.0685 7.1770 43 1 1.6767 -1.7489 1.2492 44 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408466492.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:58 Heat of formation + Delta-G solvation = -63.398042 kcal Electronic energy + Delta-G solvation = -21080.837333 eV Core-core repulsion = 18225.443743 eV Total energy + Delta-G solvation = -2855.393590 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87817 -37.57290 -36.68829 -34.87475 -34.46228 -31.30849 -29.12173 -27.94940 -27.46108 -27.31880 -26.04980 -23.88537 -21.74854 -20.26324 -19.14284 -18.61065 -18.37045 -16.78416 -16.68036 -16.26828 -15.86497 -15.73266 -15.14106 -14.86310 -14.38616 -14.23448 -14.01403 -13.62481 -13.41371 -13.30798 -13.07749 -12.91317 -12.78298 -12.60793 -12.50490 -12.47862 -12.28636 -12.12255 -11.69896 -11.57292 -11.44341 -11.26999 -11.12917 -10.89261 -10.78077 -10.58771 -10.32437 -8.98055 -8.22121 -6.32095 1.38183 1.38848 1.53036 2.39078 3.10232 3.27188 3.54742 3.76944 3.80597 4.10081 4.13186 4.18603 4.27853 4.41438 4.44550 4.50622 4.66548 4.69180 4.77487 4.82383 4.85196 4.93491 4.99315 5.04300 5.09920 5.11950 5.19563 5.24162 5.25100 5.29043 5.35816 5.36241 5.44168 5.48252 5.61864 5.62745 5.65331 5.76311 6.08087 6.56421 6.77955 6.85879 6.93629 7.38258 8.89000 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027779 B = 0.005899 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.708232 B = 4745.592911 C = 5114.218320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.097 4.097 5 C -0.057 4.057 6 C -0.184 4.184 7 C -0.133 4.133 8 C -0.077 4.077 9 C 0.118 3.882 10 C 0.017 3.983 11 O -0.567 6.567 12 N -0.681 5.681 13 C 0.212 3.788 14 C -0.534 4.534 15 H 0.057 0.943 16 C 0.002 3.998 17 N -0.934 5.934 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.277 1.277 22 C -0.097 4.097 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.111 0.889 37 H 0.007 0.993 38 H 0.389 0.611 39 H 0.331 0.669 40 H -0.042 1.042 41 H 0.009 0.991 42 H 0.264 0.736 43 H 0.055 0.945 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 2.931 -18.074 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.093 0.907 4 C -0.135 4.135 5 C -0.058 4.058 6 C -0.240 4.240 7 C -0.191 4.191 8 C -0.115 4.115 9 C 0.027 3.973 10 C -0.061 4.061 11 O -0.375 6.375 12 N -0.311 5.311 13 C 0.084 3.916 14 C -0.572 4.572 15 H 0.075 0.925 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.795 3.205 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.135 4.135 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.025 0.975 38 H 0.238 0.762 39 H 0.148 0.852 40 H -0.024 1.024 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.800 1.868 -17.981 18.095 hybrid contribution 0.657 1.059 1.616 2.041 sum -0.143 2.927 -16.365 16.625 Atomic orbital electron populations 1.21799 0.94328 1.01998 1.01979 1.21261 0.96195 0.99501 0.94005 0.90696 1.21675 0.94239 1.00578 0.96980 1.20457 0.95145 0.95956 0.94226 1.22991 1.03018 0.95035 1.02937 1.21835 1.00866 1.00034 0.96331 1.21452 0.99849 0.98063 0.92175 1.21013 0.94503 0.90401 0.91398 1.23859 0.81845 0.99941 1.00451 1.86394 1.20771 1.35083 1.95206 1.60705 1.12468 1.56002 1.01890 1.19201 0.94116 0.91141 0.87095 1.21615 1.31145 1.12201 0.92229 0.92521 1.25903 0.95098 0.96360 1.02225 1.70091 1.36817 1.26914 1.23605 0.85324 0.78194 0.78608 0.78404 1.19007 1.20193 1.20213 1.21589 0.93541 1.00555 0.97781 0.92788 0.93749 0.90564 0.89973 0.92220 0.89130 0.92258 0.91895 0.92906 0.91243 0.92826 0.92491 0.93092 0.87161 0.97499 0.76207 0.85222 1.02410 0.97298 0.92707 0.92583 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.19 71.98 0.66 -2.66 16 2 C -0.09 -2.36 2.36 -10.80 -0.03 -2.38 16 3 H 0.07 1.87 5.05 -2.39 -0.01 1.86 16 4 C -0.10 -2.13 3.96 30.59 0.12 -2.01 16 5 C -0.06 -1.32 0.77 -52.18 -0.04 -1.36 16 6 C -0.18 -3.90 7.27 71.98 0.52 -3.38 16 7 C -0.13 -2.56 8.22 71.98 0.59 -1.97 16 8 C -0.08 -2.38 3.78 30.60 0.12 -2.26 16 9 C 0.12 4.32 0.53 3.55 0.00 4.32 16 10 C 0.02 0.57 4.70 71.98 0.34 0.91 16 11 O -0.57 -17.22 10.13 -148.98 -1.51 -18.73 16 12 N -0.68 -31.56 6.04 -474.03 -2.87 -34.42 16 13 C 0.21 11.81 4.66 85.56 0.40 12.20 16 14 C -0.53 -31.95 9.36 25.60 0.24 -31.71 16 15 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 16 C 0.00 0.11 5.46 84.65 0.46 0.58 16 17 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 18 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 C -0.10 -3.46 3.64 30.61 0.11 -3.35 16 23 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.09 2.15 3.79 -1.14 0.00 2.14 16 29 H 0.06 1.05 7.70 -2.39 -0.02 1.03 16 30 H 0.06 1.30 4.37 -2.39 -0.01 1.29 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.84 7.53 -2.39 -0.02 1.82 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.11 2.99 2.51 -2.48 -0.01 2.98 16 37 H 0.01 0.28 6.35 -2.39 -0.02 0.26 16 38 H 0.39 8.24 9.12 -70.59 -0.64 7.60 16 39 H 0.33 15.48 8.41 -89.70 -0.75 14.73 16 40 H -0.04 -2.50 6.54 -2.39 -0.02 -2.52 16 41 H 0.01 0.54 5.95 -2.39 -0.01 0.53 16 42 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 43 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 44 H 0.04 1.53 6.23 -2.39 -0.01 1.52 16 Total: -1.00 -67.86 315.31 1.04 -66.81 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.39 Total: 28.94 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 3.50 Total: -33.07 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -2.58 Total: -91.85 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -1.51 Total: -18.73 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -67.86 1.04 -66.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408466492.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.414 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds