Wall clock time and date at job start Mon Mar 30 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47261 * 2 1 4 4 H 1.08995 * 109.46831 * 305.11330 * 3 2 1 5 5 N 1.46900 * 109.47180 * 65.11404 * 3 2 1 6 6 C 1.46895 * 110.99715 * 259.58386 * 5 3 2 7 7 C 1.53007 * 109.46923 * 174.64618 * 6 5 3 8 8 O 1.42896 * 109.47254 * 64.99551 * 7 6 5 9 9 C 1.42898 * 113.99854 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47334 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99771 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00565 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99520 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00414 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.46658 * 269.99986 * 14 12 10 16 16 H 1.48497 * 109.47019 * 150.00027 * 14 12 10 17 17 H 1.48494 * 109.46799 * 29.99773 * 14 12 10 18 18 C 1.52997 * 109.47016 * 185.11456 * 3 2 1 19 19 H 1.09004 * 115.55201 * 34.32974 * 18 3 2 20 20 C 1.53003 * 117.49688 * 248.62154 * 18 3 2 21 21 C 1.53000 * 117.50097 * 179.97438 * 18 3 2 22 22 C 1.53003 * 117.50122 * 214.97914 * 21 18 3 23 23 C 1.53004 * 117.49503 * 359.97438 * 21 18 3 24 24 H 1.09002 * 109.46929 * 54.32774 * 1 2 3 25 25 H 1.09001 * 109.47244 * 174.32658 * 1 2 3 26 26 H 1.08996 * 109.47410 * 294.32959 * 1 2 3 27 27 H 1.09000 * 109.47096 * 239.99669 * 2 1 3 28 28 H 1.09000 * 109.46856 * 119.99933 * 2 1 3 29 29 H 1.00896 * 111.00054 * 23.53427 * 5 3 2 30 30 H 1.08994 * 109.47598 * 54.64459 * 6 5 3 31 31 H 1.09007 * 109.47071 * 294.63970 * 6 5 3 32 32 H 1.09003 * 109.46541 * 304.99161 * 7 6 5 33 33 H 1.09006 * 109.46927 * 184.99807 * 7 6 5 34 34 H 1.09005 * 109.46745 * 60.00387 * 9 8 7 35 35 H 1.08997 * 109.47638 * 300.00538 * 9 8 7 36 36 H 0.97000 * 120.00234 * 0.02562 * 13 12 10 37 37 H 1.08992 * 117.50155 * 0.02562 * 20 18 3 38 38 H 1.09004 * 117.49998 * 145.02322 * 20 18 3 39 39 H 1.08999 * 109.47164 * 59.99841 * 22 21 18 40 40 H 1.09000 * 109.47077 * 179.97438 * 22 21 18 41 41 H 1.08997 * 109.46668 * 299.99612 * 22 21 18 42 42 H 1.08996 * 109.46964 * 60.00162 * 23 21 18 43 43 H 1.09002 * 109.46976 * 180.02562 * 23 21 18 44 44 H 1.09004 * 109.47044 * 299.99906 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9820 -0.8406 5 7 1.6537 2.0984 1.2564 6 6 0.4725 2.9501 1.0640 7 6 0.0213 3.5090 2.4150 8 8 1.0320 4.3759 2.9334 9 6 0.7080 4.9547 4.1992 10 6 1.8379 5.8449 4.6485 11 1 2.7155 5.9577 4.0291 12 6 1.7514 6.5153 5.8501 13 7 0.6830 6.3775 6.6045 14 14 3.1517 7.6194 6.4067 15 1 4.1212 6.8254 7.2034 16 1 2.6108 8.7222 7.2412 17 1 3.8361 8.1880 5.2179 18 6 3.5645 1.4443 -0.1286 19 1 3.9854 0.6496 -0.7446 20 6 4.3753 1.9021 1.0855 21 6 4.2702 2.8017 -0.1483 22 6 5.5129 2.9392 -1.0302 23 6 3.3972 4.0534 -0.0384 24 1 -0.3633 0.5993 -0.8349 25 1 -0.3634 -1.0226 -0.1016 26 1 -0.3634 0.4234 0.9363 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.4947 1.4189 1.9851 30 1 -0.3335 2.3605 0.6273 31 1 0.7234 3.7739 0.3956 32 1 -0.1445 2.6868 3.1111 33 1 -0.9056 4.0681 2.2856 34 1 0.5563 4.1627 4.9326 35 1 -0.2043 5.5437 4.1065 36 1 -0.0440 5.8039 6.3157 37 1 3.8227 2.2016 1.9759 38 1 5.3298 1.4085 1.2685 39 1 5.2462 2.7383 -2.0677 40 1 5.9076 3.9518 -0.9465 41 1 6.2700 2.2257 -0.7049 42 1 2.8446 4.0296 0.9008 43 1 4.0294 4.9409 -0.0661 44 1 2.6956 4.0814 -0.8722 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419318882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:30 Heat of formation + Delta-G solvation = -43.775232 kcal Electronic energy + Delta-G solvation = -19965.961100 eV Core-core repulsion = 17111.418419 eV Total energy + Delta-G solvation = -2854.542681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.31350 -37.01418 -35.74149 -33.11853 -32.16068 -29.66389 -28.11493 -27.10785 -26.40105 -25.34409 -22.46567 -22.20895 -21.42612 -19.92551 -18.46230 -16.92063 -16.18881 -15.79768 -15.07962 -14.88999 -14.59481 -13.95295 -13.69880 -13.51172 -13.38493 -13.24907 -12.89003 -12.60491 -12.30583 -12.03147 -11.89172 -11.78982 -11.61553 -11.49047 -11.23720 -11.09226 -11.03152 -10.78271 -10.68402 -10.48642 -10.09356 -10.04364 -9.54166 -9.13308 -8.79503 -8.58157 -8.18918 -8.06949 -6.41665 -4.09448 3.46066 3.50255 3.66825 3.94873 4.32465 4.48290 4.67480 4.81129 4.92639 4.98095 5.15050 5.19003 5.20273 5.36210 5.40962 5.43639 5.54088 5.64845 5.66705 5.74604 5.80057 5.82432 5.88363 5.89346 6.01533 6.02516 6.10664 6.12404 6.23217 6.28525 6.33123 6.40476 6.51921 6.75841 6.80593 7.06905 7.17777 7.26761 7.61821 7.96648 8.24554 8.71376 8.87022 9.61045 10.98622 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019685 B = 0.005350 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.029041 B = 5232.707080 C = 6282.170287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.145 4.145 3 C 0.118 3.882 4 H 0.071 0.929 5 N -0.664 5.664 6 C 0.059 3.941 7 C 0.061 3.939 8 O -0.370 6.370 9 C 0.186 3.814 10 C -0.590 4.590 11 H 0.061 0.939 12 C 0.016 3.984 13 N -0.914 5.914 14 Si 1.080 2.920 15 H -0.286 1.286 16 H -0.284 1.284 17 H -0.286 1.286 18 C -0.148 4.148 19 H 0.093 0.907 20 C -0.154 4.154 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.118 4.118 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.339 0.661 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.038 0.962 34 H -0.008 1.008 35 H -0.009 1.009 36 H 0.266 0.734 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.044 0.956 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 -11.939 -15.124 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.184 4.184 3 C 0.008 3.992 4 H 0.089 0.911 5 N -0.295 5.295 6 C -0.069 4.069 7 C -0.017 4.017 8 O -0.288 6.288 9 C 0.111 3.889 10 C -0.628 4.628 11 H 0.080 0.920 12 C -0.187 4.187 13 N -0.551 5.551 14 Si 0.908 3.092 15 H -0.213 1.213 16 H -0.210 1.210 17 H -0.212 1.212 18 C -0.167 4.167 19 H 0.111 0.889 20 C -0.191 4.191 21 C -0.117 4.117 22 C -0.172 4.172 23 C -0.175 4.175 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.010 0.990 35 H 0.009 0.991 36 H 0.076 0.924 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.118 0.882 43 H 0.064 0.936 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.530 -10.358 -14.073 17.827 hybrid contribution -1.565 -1.927 -1.233 2.772 sum 1.965 -12.285 -15.306 19.724 Atomic orbital electron populations 1.21883 0.96064 1.01541 1.01856 1.22159 0.95718 0.98022 1.02475 1.20994 0.93378 0.92145 0.92654 0.91066 1.60481 1.36878 1.25379 1.06808 1.22165 0.91051 0.96591 0.97138 1.22310 0.91903 0.93501 0.94008 1.87975 1.41027 1.61893 1.37950 1.20257 0.96577 0.91900 0.80191 1.21918 1.04406 1.29153 1.07361 0.92043 1.25907 1.01647 0.98178 0.92961 1.70774 1.07002 1.37957 1.39352 0.83386 0.74224 0.75916 0.75706 1.21286 1.20956 1.21215 1.22463 0.93325 0.97635 1.03309 0.88863 1.23197 0.99885 1.02219 0.93799 1.21429 0.97764 0.92138 1.00399 1.21369 0.95732 1.01619 0.98443 1.21478 0.98380 0.93861 1.03771 0.92775 0.92804 0.92573 0.91744 0.91509 0.84151 0.94396 0.90335 0.94944 0.94410 0.99022 0.99132 0.92381 0.86438 0.90571 0.93032 0.92356 0.93101 0.88168 0.93644 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.62 37.16 0.32 -1.10 16 2 C -0.14 -1.39 5.24 -26.73 -0.14 -1.53 16 3 C 0.12 1.36 1.91 -67.72 -0.13 1.23 16 4 H 0.07 0.85 7.52 -51.93 -0.39 0.46 16 5 N -0.66 -9.03 2.70 -106.73 -0.29 -9.31 16 6 C 0.06 0.85 4.83 -3.82 -0.02 0.83 16 7 C 0.06 1.10 6.17 37.16 0.23 1.32 16 8 O -0.37 -8.80 10.27 -35.23 -0.36 -9.16 16 9 C 0.19 5.08 5.00 36.00 0.18 5.26 16 10 C -0.59 -17.70 9.43 -34.44 -0.32 -18.03 16 11 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 12 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 13 N -0.91 -28.34 13.65 55.43 0.76 -27.59 16 14 Si 1.08 25.92 29.90 -169.99 -5.08 20.84 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.15 -1.79 5.43 -90.62 -0.49 -2.28 16 19 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 20 C -0.15 -2.13 9.16 -26.70 -0.24 -2.38 16 21 C -0.12 -1.58 2.70 -154.48 -0.42 -1.99 16 22 C -0.11 -1.32 9.85 37.16 0.37 -0.95 16 23 C -0.12 -1.81 8.12 37.16 0.30 -1.51 16 24 H 0.05 0.48 8.07 -51.93 -0.42 0.07 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.55 6.61 -51.93 -0.34 0.21 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 29 H 0.34 4.58 7.94 -39.29 -0.31 4.27 16 30 H 0.04 0.46 5.89 -51.93 -0.31 0.15 16 31 H 0.08 1.19 7.18 -51.93 -0.37 0.82 16 32 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H -0.01 -0.22 8.01 -51.93 -0.42 -0.64 16 35 H -0.01 -0.25 8.01 -51.93 -0.42 -0.67 16 36 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 37 H 0.12 1.93 6.86 -51.93 -0.36 1.57 16 38 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.67 7.92 -51.93 -0.41 0.26 16 41 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 42 H 0.10 1.82 5.60 -51.93 -0.29 1.53 16 43 H 0.04 0.70 7.92 -51.93 -0.41 0.28 16 44 H 0.04 0.57 7.94 -51.93 -0.41 0.16 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -31.01 343.05 -8.41 -39.42 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.14 Total: 1.39 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -0.47 Total: -20.76 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.47 Total: -36.90 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.36 Total: -9.16 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.01 -8.41 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419318882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.359 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds