Wall clock time and date at job start Mon Mar 30 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46878 * 2 1 4 4 H 1.08993 * 109.47620 * 302.00055 * 3 2 1 5 5 N 1.46904 * 109.47061 * 62.00237 * 3 2 1 6 6 C 1.46895 * 111.00151 * 60.96139 * 5 3 2 7 7 C 1.53001 * 109.47281 * 181.74247 * 6 5 3 8 8 O 1.42908 * 109.47138 * 64.99826 * 7 6 5 9 9 C 1.42903 * 113.99925 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46921 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00030 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99584 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00204 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99695 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.46881 * 89.99772 * 14 12 10 16 16 H 1.48497 * 109.47162 * 210.00297 * 14 12 10 17 17 H 1.48499 * 109.47096 * 329.99993 * 14 12 10 18 18 C 1.53004 * 109.47400 * 181.99822 * 3 2 1 19 19 H 1.09006 * 115.55965 * 322.56439 * 18 3 2 20 20 C 1.53077 * 117.49367 * 108.26943 * 18 3 2 21 21 C 1.52997 * 117.50110 * 176.87333 * 18 3 2 22 22 C 1.52995 * 117.50085 * 145.02123 * 21 18 3 23 23 C 1.53006 * 117.49918 * 0.02562 * 21 18 3 24 24 H 1.08996 * 109.47083 * 304.51788 * 1 2 3 25 25 H 1.08998 * 109.47272 * 64.52297 * 1 2 3 26 26 H 1.09004 * 109.46583 * 184.52060 * 1 2 3 27 27 H 1.09000 * 109.47396 * 240.00782 * 2 1 3 28 28 H 1.09000 * 109.47330 * 120.00084 * 2 1 3 29 29 H 1.00902 * 111.00045 * 184.91998 * 5 3 2 30 30 H 1.09004 * 109.47131 * 301.74084 * 6 5 3 31 31 H 1.09002 * 109.47631 * 61.74049 * 6 5 3 32 32 H 1.09002 * 109.47182 * 184.99942 * 7 6 5 33 33 H 1.09000 * 109.46704 * 304.99985 * 7 6 5 34 34 H 1.09003 * 109.47004 * 300.00184 * 9 8 7 35 35 H 1.09002 * 109.46803 * 59.99964 * 9 8 7 36 36 H 0.97000 * 120.00060 * 180.02562 * 13 12 10 37 37 H 1.08996 * 117.49006 * 0.02562 * 20 18 3 38 38 H 1.08994 * 117.53339 * 214.95716 * 20 18 3 39 39 H 1.09001 * 109.47615 * 299.91450 * 22 21 18 40 40 H 1.08999 * 109.47449 * 179.91389 * 22 21 18 41 41 H 1.09006 * 109.47299 * 59.91055 * 22 21 18 42 42 H 1.08998 * 109.46871 * 197.97492 * 23 21 18 43 43 H 1.08996 * 109.46747 * 317.97879 * 23 21 18 44 44 H 1.09001 * 109.46611 * 77.97776 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6476 1.9666 -0.8714 5 7 1.5901 2.1209 1.2229 6 6 2.1196 1.4542 2.4200 7 6 1.5957 2.1612 3.6715 8 8 0.1772 2.0052 3.7482 9 6 -0.4159 2.6326 4.8869 10 6 -1.9056 2.4061 4.8662 11 1 -2.3545 1.8394 4.0639 12 6 -2.6953 2.9215 5.8721 13 7 -2.1485 3.6111 6.8493 14 14 -4.5418 2.6401 5.8468 15 1 -4.8616 1.3872 6.5768 16 1 -5.2258 3.7835 6.5024 17 1 -5.0059 2.5260 4.4408 18 6 3.5691 1.4430 -0.0503 19 1 4.0587 0.6554 0.5226 20 6 4.2331 1.8838 -1.3572 21 6 4.2729 2.7990 -0.1317 22 6 5.6101 2.9458 0.5971 23 6 3.3937 4.0510 -0.1561 24 1 -0.3633 0.5823 0.8467 25 1 -0.3634 0.4420 -0.9277 26 1 -0.3633 -1.0245 0.0810 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8455 3.0970 1.2098 30 1 1.7968 0.4131 2.4288 31 1 3.2088 1.4967 2.4078 32 1 2.0577 1.7235 4.5564 33 1 1.8423 3.2217 3.6197 34 1 0.0045 2.2050 5.7973 35 1 -0.2110 3.7028 4.8599 36 1 -2.7040 3.9734 7.5571 37 1 3.5801 2.1737 -2.1804 38 1 5.1595 1.3866 -1.6444 39 1 5.4660 2.7610 1.6616 40 1 5.9938 3.9557 0.4524 41 1 6.3233 2.2253 0.1966 42 1 3.9737 4.8950 -0.5291 43 1 2.5378 3.8811 -0.8092 44 1 3.0433 4.2684 0.8529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419318884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:36 Heat of formation + Delta-G solvation = -60.519397 kcal Electronic energy + Delta-G solvation = -19741.499331 eV Core-core repulsion = 16886.230569 eV Total energy + Delta-G solvation = -2855.268763 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59195 -38.56769 -36.70554 -34.91897 -33.36820 -30.59383 -30.12399 -28.86290 -28.16587 -26.10293 -24.47591 -23.38197 -22.75050 -20.74989 -19.60195 -18.63988 -17.62558 -17.21630 -16.63983 -16.28211 -15.88929 -15.53562 -15.29756 -14.95030 -14.53475 -14.30425 -14.03215 -13.75454 -13.56185 -13.44784 -13.24156 -13.09100 -12.84903 -12.83210 -12.64880 -12.56235 -12.31706 -12.13411 -12.02404 -11.83641 -11.69544 -11.40100 -11.24088 -10.89257 -10.81733 -10.31756 -10.16024 -9.09403 -8.30171 -6.41888 1.40338 1.43387 1.55666 2.36505 2.73128 3.03506 3.27035 3.41803 3.59910 3.81992 4.00029 4.09749 4.18381 4.26511 4.36890 4.41472 4.42266 4.56858 4.65009 4.69535 4.72424 4.74714 4.85772 4.92816 4.94857 4.98861 5.01872 5.04896 5.05701 5.12915 5.19890 5.22224 5.27195 5.29130 5.39849 5.48411 5.57688 5.65340 5.99758 6.23974 6.56002 6.63158 6.89208 7.30436 8.82313 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027819 B = 0.004307 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.250588 B = 6500.033261 C = 7046.979283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.124 3.876 4 H 0.080 0.920 5 N -0.684 5.684 6 C 0.077 3.923 7 C 0.056 3.944 8 O -0.392 6.392 9 C 0.209 3.791 10 C -0.544 4.544 11 H 0.060 0.940 12 C 0.006 3.994 13 N -0.932 5.932 14 Si 0.982 3.018 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.265 1.265 18 C -0.183 4.183 19 H 0.099 0.901 20 C -0.154 4.154 21 C -0.130 4.130 22 C -0.114 4.114 23 C -0.121 4.121 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.341 0.659 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.034 0.966 34 H -0.018 1.018 35 H -0.018 1.018 36 H 0.270 0.730 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.497 -3.398 -16.224 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C 0.014 3.986 4 H 0.098 0.902 5 N -0.317 5.317 6 C -0.052 4.052 7 C -0.021 4.021 8 O -0.311 6.311 9 C 0.134 3.866 10 C -0.582 4.582 11 H 0.078 0.922 12 C -0.192 4.192 13 N -0.572 5.572 14 Si 0.805 3.195 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.190 1.190 18 C -0.203 4.203 19 H 0.118 0.882 20 C -0.192 4.192 21 C -0.131 4.131 22 C -0.171 4.171 23 C -0.178 4.178 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.163 0.837 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.000 1.000 35 H 0.000 1.000 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.735 -3.720 -16.165 21.536 hybrid contribution 0.316 0.501 0.720 0.932 sum 14.051 -3.219 -15.445 21.127 Atomic orbital electron populations 1.21624 0.96121 1.00764 1.01661 1.21521 0.95830 0.95315 1.01855 1.21187 0.89660 0.95394 0.92351 0.90207 1.60583 1.63363 1.06587 1.01211 1.21816 0.96473 0.98733 0.88138 1.22589 0.82938 0.98729 0.97889 1.87917 1.19689 1.76721 1.46819 1.19786 0.93146 0.90463 0.83254 1.21374 0.92222 1.34987 1.09572 0.92211 1.25945 1.04919 0.94108 0.94199 1.70072 1.38124 1.36262 1.12697 0.85199 0.77280 0.78254 0.78774 1.19260 1.19856 1.18966 1.23243 0.96107 0.98366 1.02608 0.88239 1.23250 1.02627 1.02276 0.91009 1.21615 0.97886 0.91383 1.02180 1.21331 0.93940 1.02487 0.99377 1.21437 0.98865 0.96133 1.01396 0.93704 0.92854 0.93261 0.90392 0.92638 0.83748 0.90940 0.92185 0.93929 0.94743 1.00044 1.00050 0.92107 0.88445 0.87958 0.92988 0.91541 0.91780 0.91078 0.92280 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.84 71.98 0.71 -3.22 16 2 C -0.11 -2.48 5.15 30.59 0.16 -2.32 16 3 C 0.12 2.81 2.04 44.92 0.09 2.91 16 4 H 0.08 1.79 7.17 -2.39 -0.02 1.78 16 5 N -0.68 -19.89 5.61 -491.56 -2.76 -22.65 16 6 C 0.08 2.34 5.41 86.30 0.47 2.81 16 7 C 0.06 2.16 6.23 71.98 0.45 2.61 16 8 O -0.39 -19.94 10.27 -148.98 -1.53 -21.47 16 9 C 0.21 12.18 5.69 71.24 0.41 12.59 16 10 C -0.54 -33.47 9.43 25.60 0.24 -33.23 16 11 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 12 C 0.01 0.38 5.46 84.65 0.46 0.84 16 13 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 14 Si 0.98 45.48 29.54 68.60 2.03 47.50 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 C -0.18 -3.43 3.61 -10.77 -0.04 -3.47 16 19 H 0.10 1.91 7.92 -2.38 -0.02 1.89 16 20 C -0.15 -2.37 9.50 30.62 0.29 -2.08 16 21 C -0.13 -2.26 2.67 -52.18 -0.14 -2.39 16 22 C -0.11 -1.79 9.85 71.98 0.71 -1.08 16 23 C -0.12 -2.20 7.97 71.98 0.57 -1.63 16 24 H 0.04 1.57 7.53 -2.39 -0.02 1.55 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.35 6.28 -2.39 -0.01 1.33 16 29 H 0.34 9.60 5.45 -89.69 -0.49 9.11 16 30 H 0.07 2.30 6.19 -2.38 -0.01 2.29 16 31 H 0.06 1.51 6.98 -2.39 -0.02 1.50 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 35 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16 38 H 0.10 1.35 8.05 -2.39 -0.02 1.33 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 41 H 0.06 0.88 7.90 -2.38 -0.02 0.86 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.10 6.95 -2.39 -0.02 1.08 16 44 H 0.05 1.07 6.50 -2.39 -0.02 1.06 16 Total: -1.00 -66.94 345.35 2.85 -64.09 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.45 Total: 17.14 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 4.38 Total: -27.67 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.47 Total: -79.59 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -1.53 Total: -21.47 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -66.94 2.85 -64.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419318884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.568 kcal (2) G-P(sol) polarization free energy of solvation -66.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds