Wall clock time and date at job start Mon Mar 30 2020 06:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47107 * 2 1 4 4 H 1.09003 * 109.47493 * 180.59990 * 3 2 1 5 5 C 1.50701 * 109.47289 * 60.60306 * 3 2 1 6 6 H 1.08002 * 119.99753 * 241.60200 * 5 3 2 7 7 C 1.37880 * 120.00003 * 61.59485 * 5 3 2 8 8 N 1.31516 * 120.00041 * 197.60498 * 7 5 3 9 9 Si 1.86800 * 119.99755 * 17.61220 * 7 5 3 10 10 H 1.48498 * 109.47296 * 90.79181 * 9 7 5 11 11 H 1.48504 * 109.46676 * 210.79062 * 9 7 5 12 12 H 1.48494 * 109.47160 * 330.78915 * 9 7 5 13 13 N 1.46896 * 109.47623 * 300.60057 * 3 2 1 14 14 C 1.46897 * 111.00794 * 173.92291 * 13 3 2 15 15 C 1.46903 * 110.99701 * 297.88103 * 13 3 2 16 16 C 1.53006 * 109.46983 * 170.50748 * 15 13 3 17 17 H 1.08996 * 110.45634 * 54.29585 * 16 15 13 18 18 C 1.54508 * 110.50890 * 291.69025 * 16 15 13 19 19 C 1.54476 * 104.06398 * 241.21698 * 18 16 15 20 20 H 1.08999 * 110.37232 * 94.96691 * 19 18 16 21 21 C 1.53006 * 110.37675 * 217.19137 * 19 18 16 22 22 O 1.44426 * 104.80274 * 336.02588 * 19 18 16 23 23 C 1.44413 * 105.27719 * 40.50832 * 22 19 18 24 24 H 1.09007 * 110.37297 * 78.31954 * 23 22 19 25 25 C 1.53001 * 110.37694 * 200.65678 * 23 22 19 26 26 H 1.08987 * 109.47220 * 304.11311 * 1 2 3 27 27 H 1.09003 * 109.46934 * 64.11959 * 1 2 3 28 28 H 1.09003 * 109.46707 * 184.10947 * 1 2 3 29 29 H 1.09004 * 109.47199 * 239.99727 * 2 1 3 30 30 H 1.09003 * 109.46942 * 119.99946 * 2 1 3 31 31 H 0.96996 * 119.99784 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47563 * 183.95855 * 14 13 3 33 33 H 1.09002 * 109.46616 * 303.96025 * 14 13 3 34 34 H 1.08997 * 109.46966 * 63.94987 * 14 13 3 35 35 H 1.08994 * 109.47424 * 50.50600 * 15 13 3 36 36 H 1.08993 * 109.47133 * 290.50318 * 15 13 3 37 37 H 1.08994 * 110.51656 * 359.86640 * 18 16 15 38 38 H 1.09002 * 110.50989 * 122.43564 * 18 16 15 39 39 H 1.09001 * 109.46412 * 59.99794 * 21 19 18 40 40 H 1.08987 * 109.47095 * 179.97438 * 21 19 18 41 41 H 1.08996 * 109.46968 * 300.00228 * 21 19 18 42 42 H 1.08999 * 109.47392 * 175.37678 * 25 23 22 43 43 H 1.08997 * 109.47255 * 295.38345 * 25 23 22 44 44 H 1.09006 * 109.46931 * 55.38304 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4426 -0.0108 5 6 1.5499 2.1486 1.2379 6 1 0.9069 3.0117 1.1483 7 6 1.9223 1.6926 2.4847 8 7 1.2464 2.0646 3.5498 9 14 3.3870 0.5468 2.6610 10 1 4.6186 1.3475 2.8781 11 1 3.1725 -0.3558 3.8206 12 1 3.5342 -0.2622 1.4245 13 7 1.5386 2.1392 -1.1920 14 6 1.8877 3.5656 -1.1541 15 6 2.0385 1.5073 -2.4204 16 6 1.3160 2.1026 -3.6306 17 1 1.4069 3.1887 -3.6322 18 6 -0.1712 1.6837 -3.6331 19 6 -0.3350 0.8883 -4.9472 20 1 -0.2196 -0.1794 -4.7613 21 6 -1.7003 1.1738 -5.5762 22 8 0.7237 1.3691 -5.8039 23 6 1.8748 1.5106 -4.9435 24 1 2.3312 0.5383 -4.7573 25 6 2.8925 2.4671 -5.5682 26 1 -0.3633 0.5763 0.8507 27 1 -0.3633 0.4486 -0.9246 28 1 -0.3633 -1.0251 0.0736 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5087 1.7441 4.4269 32 1 1.4449 4.0710 -2.0123 33 1 1.5057 4.0088 -0.2345 34 1 2.9717 3.6753 -1.1873 35 1 1.8531 0.4341 -2.3782 36 1 3.1095 1.6877 -2.5118 37 1 -0.3913 1.0507 -2.7736 38 1 -0.8156 2.5629 -3.6336 39 1 -1.7850 2.2388 -5.7926 40 1 -1.7999 0.6064 -6.5013 41 1 -2.4883 0.8802 -4.8827 42 1 3.7157 2.6272 -4.8720 43 1 3.2770 2.0357 -6.4924 44 1 2.4098 3.4200 -5.7854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686396987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:39 Heat of formation + Delta-G solvation = -65.842731 kcal Electronic energy + Delta-G solvation = -20684.590617 eV Core-core repulsion = 17829.091017 eV Total energy + Delta-G solvation = -2855.499600 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89691 -38.93297 -35.28461 -33.80327 -33.46096 -32.85739 -30.05231 -28.67232 -27.80601 -25.83416 -24.35066 -23.37793 -22.31494 -21.27336 -20.51583 -18.50403 -17.30881 -17.01181 -16.72532 -16.23876 -15.85800 -15.69362 -15.14951 -14.76472 -14.48340 -14.26497 -14.09788 -13.88270 -13.70614 -13.16585 -13.02136 -12.93959 -12.82431 -12.74299 -12.63188 -12.47244 -12.34439 -12.10494 -11.94245 -11.76420 -11.49726 -11.41658 -11.24796 -11.05475 -10.86527 -10.62390 -10.45655 -8.90459 -8.25348 -6.19237 1.32014 1.37622 1.44404 2.37064 2.93554 3.05612 3.22137 3.74255 3.90356 3.96761 4.10503 4.28044 4.34591 4.43604 4.45344 4.48229 4.52301 4.58490 4.61962 4.68960 4.76818 4.79900 4.87749 4.89015 4.97329 5.06268 5.10784 5.18088 5.18738 5.25713 5.27540 5.29663 5.34746 5.36070 5.41471 5.48210 5.76952 5.87116 6.03335 6.10626 6.42379 6.77681 6.84652 7.42103 8.90695 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029645 B = 0.005843 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.273411 B = 4790.625226 C = 5081.870801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.117 4.117 3 C 0.193 3.807 4 H -0.019 1.019 5 C -0.497 4.497 6 H 0.043 0.957 7 C 0.025 3.975 8 N -0.938 5.938 9 Si 0.912 3.088 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.230 1.230 13 N -0.526 5.526 14 C 0.039 3.961 15 C 0.061 3.939 16 C -0.105 4.105 17 H 0.079 0.921 18 C -0.133 4.133 19 C 0.066 3.934 20 H 0.070 0.930 21 C -0.141 4.141 22 O -0.387 6.387 23 C 0.075 3.925 24 H 0.070 0.930 25 C -0.141 4.141 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.262 0.738 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.027 0.973 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -3.269 -17.825 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C 0.085 3.915 4 H -0.001 1.001 5 C -0.535 4.535 6 H 0.061 0.939 7 C -0.173 4.173 8 N -0.578 5.578 9 Si 0.738 3.262 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.153 1.153 13 N -0.250 5.250 14 C -0.109 4.109 15 C -0.067 4.067 16 C -0.124 4.124 17 H 0.098 0.902 18 C -0.171 4.171 19 C 0.009 3.991 20 H 0.088 0.912 21 C -0.199 4.199 22 O -0.307 6.307 23 C 0.017 3.983 24 H 0.088 0.912 25 C -0.198 4.198 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.139 -3.279 -17.867 18.166 hybrid contribution 1.516 -0.137 1.226 1.955 sum 1.377 -3.416 -16.641 17.044 Atomic orbital electron populations 1.21395 0.95097 0.99172 1.01690 1.21886 0.97668 0.96569 0.99324 1.19468 0.91422 0.92056 0.88594 1.00109 1.21022 1.29358 1.13525 0.89633 0.93867 1.25550 0.98454 0.97671 0.95632 1.70116 1.39875 1.48302 0.99483 0.86436 0.80800 0.79980 0.79005 1.20942 1.21517 1.15317 1.61822 1.59521 1.02376 1.01293 1.22215 0.97361 0.89651 1.01657 1.22193 0.95927 0.99235 0.89332 1.22508 0.95443 1.00957 0.93513 0.90221 1.22912 0.95772 1.00681 0.97714 1.23107 0.88932 0.97660 0.89424 0.91226 1.21783 0.94146 1.02447 1.01477 1.89079 1.21063 1.87226 1.33381 1.23018 0.87728 0.98876 0.88680 0.91187 1.21781 0.97741 0.98847 1.01478 0.94904 0.91980 0.93736 0.92503 0.94099 0.92848 0.90909 0.92968 0.96945 0.90596 0.95496 0.90382 0.91275 0.92272 0.91612 0.90021 0.90520 0.91341 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.58 9.52 71.98 0.69 -3.89 16 2 C -0.12 -4.74 4.73 30.59 0.14 -4.59 16 3 C 0.19 8.58 1.31 44.17 0.06 8.64 16 4 H -0.02 -0.85 6.96 -2.39 -0.02 -0.87 16 5 C -0.50 -26.95 6.99 25.60 0.18 -26.77 16 6 H 0.04 2.63 6.56 -2.91 -0.02 2.61 16 7 C 0.03 1.41 5.31 84.66 0.45 1.86 16 8 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 9 Si 0.91 42.80 25.83 68.60 1.77 44.58 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.23 -9.80 5.40 99.48 0.54 -9.26 16 13 N -0.53 -19.91 3.74 -901.49 -3.37 -23.29 16 14 C 0.04 1.46 9.03 127.69 1.15 2.61 16 15 C 0.06 1.85 3.89 86.30 0.34 2.19 16 16 C -0.11 -2.72 2.58 -9.78 -0.03 -2.75 16 17 H 0.08 2.11 6.09 -2.39 -0.01 2.10 16 18 C -0.13 -3.41 6.13 31.61 0.19 -3.21 16 19 C 0.07 1.51 3.92 31.10 0.12 1.63 16 20 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.14 -2.68 9.52 71.98 0.69 -2.00 16 22 O -0.39 -9.93 11.04 -148.98 -1.64 -11.57 16 23 C 0.07 1.74 3.48 31.10 0.11 1.85 16 24 H 0.07 1.57 7.87 -2.38 -0.02 1.55 16 25 C -0.14 -2.78 9.52 71.98 0.69 -2.10 16 26 H 0.03 1.53 7.09 -2.39 -0.02 1.52 16 27 H 0.06 2.26 6.00 -2.39 -0.01 2.25 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.99 6.29 -2.39 -0.01 1.97 16 30 H 0.04 1.76 4.63 -2.39 -0.01 1.75 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.07 2.27 6.36 -2.39 -0.02 2.25 16 33 H 0.05 2.25 6.00 -2.39 -0.01 2.24 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 2.27 5.94 -2.39 -0.01 2.25 16 36 H 0.03 0.80 8.13 -2.39 -0.02 0.78 16 37 H 0.08 2.20 6.00 -2.39 -0.01 2.18 16 38 H 0.07 1.78 7.88 -2.39 -0.02 1.76 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -61.40 323.51 2.61 -58.79 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.78 Total: 14.87 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 4.77 Total: -26.54 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -3.08 Total: -80.13 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -1.64 Total: -11.57 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.77 Total: 44.58 kcal Total: -61.40 2.61 -58.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686396987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.049 kcal (2) G-P(sol) polarization free energy of solvation -61.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds