Wall clock time and date at job start Mon Mar 30 2020 06:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47107 * 2 1 4 4 H 1.08991 * 109.47114 * 304.52716 * 3 2 1 5 5 C 1.50698 * 109.46964 * 184.52715 * 3 2 1 6 6 H 1.08000 * 119.99813 * 239.99880 * 5 3 2 7 7 C 1.37879 * 120.00017 * 60.00038 * 5 3 2 8 8 N 1.31515 * 119.99845 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99937 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46942 * 90.00092 * 9 7 5 11 11 H 1.48492 * 109.47425 * 209.99929 * 9 7 5 12 12 H 1.48502 * 109.47296 * 330.00544 * 9 7 5 13 13 N 1.46904 * 109.47023 * 64.52925 * 3 2 1 14 14 C 1.46894 * 110.99892 * 195.51509 * 13 3 2 15 15 C 1.46896 * 111.00122 * 71.55876 * 13 3 2 16 16 C 1.52998 * 109.47210 * 201.18372 * 15 13 3 17 17 H 1.09003 * 110.54300 * 51.02670 * 16 15 13 18 18 C 1.55150 * 110.59054 * 288.27402 * 16 15 13 19 19 C 1.54992 * 102.14552 * 220.57871 * 18 16 15 20 20 H 1.08999 * 110.75299 * 278.40535 * 19 18 16 21 21 C 1.53006 * 110.61595 * 155.47655 * 19 18 16 22 22 O 1.44371 * 103.49229 * 36.97459 * 19 18 16 23 23 C 1.43744 * 106.97415 * 319.93948 * 22 19 18 24 24 H 1.09005 * 109.87915 * 267.08750 * 23 22 19 25 25 C 1.53004 * 109.88216 * 146.08975 * 23 22 19 26 26 H 1.09005 * 109.47101 * 184.63254 * 1 2 3 27 27 H 1.09002 * 109.47368 * 304.63119 * 1 2 3 28 28 H 1.08996 * 109.47454 * 64.63103 * 1 2 3 29 29 H 1.09001 * 109.47114 * 240.00052 * 2 1 3 30 30 H 1.09000 * 109.47125 * 119.99798 * 2 1 3 31 31 H 0.97004 * 119.99386 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47029 * 287.77442 * 14 13 3 33 33 H 1.09000 * 109.47368 * 47.77586 * 14 13 3 34 34 H 1.08999 * 109.47220 * 167.77619 * 14 13 3 35 35 H 1.08996 * 109.47295 * 81.18225 * 15 13 3 36 36 H 1.09001 * 109.47546 * 321.18257 * 15 13 3 37 37 H 1.09006 * 110.92373 * 102.34625 * 18 16 15 38 38 H 1.08995 * 110.86794 * 338.79076 * 18 16 15 39 39 H 1.09001 * 109.46746 * 304.47297 * 21 19 18 40 40 H 1.09001 * 109.47030 * 64.47789 * 21 19 18 41 41 H 1.09004 * 109.47070 * 184.47523 * 21 19 18 42 42 H 1.09005 * 109.47204 * 61.70232 * 25 23 22 43 43 H 1.08990 * 109.47583 * 181.70648 * 25 23 22 44 44 H 1.09009 * 109.46469 * 301.70826 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6120 1.9792 -0.8466 5 6 3.5428 1.4440 -0.1121 6 1 4.1420 1.8907 0.6674 7 6 4.1527 0.8751 -1.2100 8 7 3.4230 0.3307 -2.1591 9 14 6.0155 0.8775 -1.3494 10 1 6.5605 -0.3523 -0.7201 11 1 6.4047 0.9147 -2.7819 12 1 6.5622 2.0719 -0.6567 13 7 1.6416 2.1028 1.2504 14 6 1.7805 3.5612 1.1431 15 6 2.4113 1.5830 2.3885 16 6 1.6547 1.8664 3.6878 17 1 0.6228 1.5233 3.6123 18 6 1.7017 3.3795 4.0277 19 6 1.9199 3.3624 5.5621 20 1 0.9758 3.2083 6.0847 21 6 2.5851 4.6598 6.0261 22 8 2.8025 2.2380 5.7643 23 6 2.3608 1.1936 4.8809 24 1 1.6638 0.5373 5.4021 25 6 3.5634 0.3872 4.3864 26 1 -0.3633 -1.0244 0.0830 27 1 -0.3634 0.5840 0.8456 28 1 -0.3634 0.4403 -0.9285 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8521 -0.0693 -2.9317 32 1 2.8376 3.8268 1.1484 33 1 1.3249 3.9021 0.2134 34 1 1.2821 4.0368 1.9877 35 1 3.3854 2.0708 2.4215 36 1 2.5472 0.5075 2.2745 37 1 0.7591 3.8648 3.7742 38 1 2.5358 3.8654 3.5216 39 1 3.5135 4.8093 5.4750 40 1 1.9138 5.4985 5.8414 41 1 2.8018 4.5958 7.0925 42 1 4.0609 -0.0812 5.2357 43 1 3.2244 -0.3831 3.6939 44 1 4.2618 1.0516 3.8774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686396988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:42 Heat of formation + Delta-G solvation = -52.089731 kcal Electronic energy + Delta-G solvation = -20867.042151 eV Core-core repulsion = 18012.138926 eV Total energy + Delta-G solvation = -2854.903225 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78748 -37.10281 -33.55399 -32.69553 -31.80888 -30.97475 -28.56818 -26.85168 -26.33114 -23.77323 -23.41479 -21.85517 -20.98819 -19.54855 -18.76243 -16.63501 -16.21575 -15.60044 -15.13563 -14.57362 -14.39247 -13.88214 -13.43912 -13.32039 -12.92604 -12.61264 -12.55733 -12.22734 -12.02206 -11.81303 -11.71891 -11.61719 -11.36477 -11.10652 -11.04302 -10.88470 -10.71677 -10.60287 -10.35035 -10.12895 -10.02985 -9.84637 -9.60013 -9.45969 -9.28352 -9.02991 -8.36426 -7.12935 -5.99184 -4.12308 3.25831 3.33434 3.36262 3.99049 4.39120 4.76642 4.91426 5.01312 5.19446 5.24732 5.28678 5.45659 5.53157 5.63360 5.73157 5.73884 5.89780 6.02778 6.09040 6.12653 6.18509 6.20899 6.27926 6.34250 6.36129 6.47110 6.50569 6.53391 6.65234 6.70625 6.71177 6.85643 7.14217 7.17951 7.22989 7.39508 7.59820 7.77084 8.00061 8.15346 8.34275 8.49727 8.98240 9.55530 11.00141 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.006769 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.981727 B = 4135.447138 C = 4550.776853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.213 3.787 4 H 0.036 0.964 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.539 5.539 14 C 0.029 3.971 15 C 0.077 3.923 16 C -0.114 4.114 17 H 0.083 0.917 18 C -0.140 4.140 19 C 0.067 3.933 20 H 0.063 0.937 21 C -0.144 4.144 22 O -0.377 6.377 23 C 0.079 3.921 24 H 0.061 0.939 25 C -0.153 4.153 26 H 0.024 0.976 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.020 0.980 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 3.893 11.733 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.106 3.894 4 H 0.054 0.946 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.262 5.262 14 C -0.120 4.120 15 C -0.051 4.051 16 C -0.133 4.133 17 H 0.102 0.898 18 C -0.178 4.178 19 C 0.010 3.990 20 H 0.081 0.919 21 C -0.201 4.201 22 O -0.297 6.297 23 C 0.021 3.979 24 H 0.079 0.921 25 C -0.210 4.210 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.213 3.684 11.756 13.020 hybrid contribution 1.759 0.141 -0.510 1.837 sum -2.454 3.825 11.246 12.130 Atomic orbital electron populations 1.21717 0.98955 0.98459 1.00494 1.21575 0.92175 0.99233 1.01718 1.19317 0.93005 0.91245 0.85787 0.94621 1.21776 0.92771 1.37886 1.05674 0.92603 1.24910 0.97739 0.95097 0.95665 1.69877 1.34771 1.38217 1.09514 0.86711 0.86364 0.78410 0.77226 1.20648 1.21214 1.20110 1.62352 1.54899 1.03387 1.05571 1.22406 0.98946 0.90357 1.00283 1.22069 0.93725 1.00962 0.88337 1.22698 1.00741 0.94337 0.95557 0.89810 1.23451 1.02596 0.97208 0.94532 1.23120 0.92900 0.87287 0.95691 0.91892 1.21755 1.01365 0.95402 1.01614 1.88847 1.54379 1.24421 1.62019 1.22703 0.96013 0.89477 0.89700 0.92089 1.22018 0.97913 1.00139 1.00901 0.95674 0.93169 0.94424 0.89068 0.95077 0.92927 0.96095 0.93019 0.92933 0.94631 0.90234 0.90478 0.90365 0.91884 0.91403 0.92310 0.92943 0.90594 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.85 37.16 0.37 -2.42 16 2 C -0.11 -2.52 5.24 -26.73 -0.14 -2.66 16 3 C 0.21 5.12 1.67 -68.86 -0.12 5.01 16 4 H 0.04 0.96 7.79 -51.93 -0.40 0.56 16 5 C -0.54 -14.22 7.43 -34.44 -0.26 -14.48 16 6 H 0.06 1.48 6.19 -52.49 -0.32 1.16 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -24.63 11.29 55.43 0.63 -24.01 16 9 Si 0.88 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.54 -10.96 3.95 -236.29 -0.93 -11.89 16 14 C 0.03 0.54 8.25 60.06 0.50 1.04 16 15 C 0.08 1.45 2.24 -3.83 -0.01 1.44 16 16 C -0.11 -1.77 3.27 -88.91 -0.29 -2.06 16 17 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 18 C -0.14 -1.96 4.17 -24.54 -0.10 -2.06 16 19 C 0.07 0.88 3.98 -25.68 -0.10 0.77 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 C -0.14 -1.59 9.66 37.16 0.36 -1.23 16 22 O -0.38 -5.83 10.89 -35.23 -0.38 -6.22 16 23 C 0.08 1.17 4.04 -26.16 -0.11 1.07 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.15 -2.29 8.37 37.16 0.31 -1.98 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.97 7.61 -51.93 -0.40 0.57 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 30 H 0.03 0.71 6.41 -51.93 -0.33 0.37 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.02 0.42 7.65 -51.93 -0.40 0.02 16 33 H 0.05 0.98 7.81 -51.93 -0.41 0.58 16 34 H 0.05 0.84 5.00 -51.93 -0.26 0.58 16 35 H 0.04 0.73 5.49 -51.93 -0.29 0.45 16 36 H 0.08 1.60 4.31 -51.93 -0.22 1.37 16 37 H 0.08 0.99 7.30 -51.93 -0.38 0.61 16 38 H 0.08 1.19 6.65 -51.93 -0.35 0.84 16 39 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.13 6.72 -51.93 -0.35 0.79 16 44 H 0.07 1.11 6.88 -51.92 -0.36 0.75 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -27.28 323.80 -8.22 -35.51 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.71 Total: 1.54 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 0.32 Total: -15.82 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.31 Total: -35.90 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.38 Total: -6.22 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.28 -8.22 -35.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686396988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.583 kcal (2) G-P(sol) polarization free energy of solvation -27.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds