Wall clock time and date at job start Mon Mar 30 2020 06:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47107 * 2 1 4 4 H 1.08991 * 109.47114 * 304.52716 * 3 2 1 5 5 C 1.50698 * 109.46964 * 184.52715 * 3 2 1 6 6 H 1.08000 * 119.99813 * 239.99880 * 5 3 2 7 7 C 1.37879 * 120.00017 * 60.00038 * 5 3 2 8 8 N 1.31515 * 119.99845 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99937 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46942 * 90.00092 * 9 7 5 11 11 H 1.48492 * 109.47425 * 209.99929 * 9 7 5 12 12 H 1.48502 * 109.47296 * 330.00544 * 9 7 5 13 13 N 1.46904 * 109.47023 * 64.52925 * 3 2 1 14 14 C 1.46894 * 110.99892 * 195.51509 * 13 3 2 15 15 C 1.46896 * 111.00122 * 71.55876 * 13 3 2 16 16 C 1.52998 * 109.47210 * 201.18372 * 15 13 3 17 17 H 1.09003 * 110.54300 * 51.02670 * 16 15 13 18 18 C 1.55150 * 110.59054 * 288.27402 * 16 15 13 19 19 C 1.54992 * 102.14552 * 220.57871 * 18 16 15 20 20 H 1.08999 * 110.75299 * 278.40535 * 19 18 16 21 21 C 1.53006 * 110.61595 * 155.47655 * 19 18 16 22 22 O 1.44371 * 103.49229 * 36.97459 * 19 18 16 23 23 C 1.43744 * 106.97415 * 319.93948 * 22 19 18 24 24 H 1.09005 * 109.87915 * 267.08750 * 23 22 19 25 25 C 1.53004 * 109.88216 * 146.08975 * 23 22 19 26 26 H 1.09005 * 109.47101 * 184.63254 * 1 2 3 27 27 H 1.09002 * 109.47368 * 304.63119 * 1 2 3 28 28 H 1.08996 * 109.47454 * 64.63103 * 1 2 3 29 29 H 1.09001 * 109.47114 * 240.00052 * 2 1 3 30 30 H 1.09000 * 109.47125 * 119.99798 * 2 1 3 31 31 H 0.97004 * 119.99386 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47029 * 287.77442 * 14 13 3 33 33 H 1.09000 * 109.47368 * 47.77586 * 14 13 3 34 34 H 1.08999 * 109.47220 * 167.77619 * 14 13 3 35 35 H 1.08996 * 109.47295 * 81.18225 * 15 13 3 36 36 H 1.09001 * 109.47546 * 321.18257 * 15 13 3 37 37 H 1.09006 * 110.92373 * 102.34625 * 18 16 15 38 38 H 1.08995 * 110.86794 * 338.79076 * 18 16 15 39 39 H 1.09001 * 109.46746 * 304.47297 * 21 19 18 40 40 H 1.09001 * 109.47030 * 64.47789 * 21 19 18 41 41 H 1.09004 * 109.47070 * 184.47523 * 21 19 18 42 42 H 1.09005 * 109.47204 * 61.70232 * 25 23 22 43 43 H 1.08990 * 109.47583 * 181.70648 * 25 23 22 44 44 H 1.09009 * 109.46469 * 301.70826 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6120 1.9792 -0.8466 5 6 3.5428 1.4440 -0.1121 6 1 4.1420 1.8907 0.6674 7 6 4.1527 0.8751 -1.2100 8 7 3.4230 0.3307 -2.1591 9 14 6.0155 0.8775 -1.3494 10 1 6.5605 -0.3523 -0.7201 11 1 6.4047 0.9147 -2.7819 12 1 6.5622 2.0719 -0.6567 13 7 1.6416 2.1028 1.2504 14 6 1.7805 3.5612 1.1431 15 6 2.4113 1.5830 2.3885 16 6 1.6547 1.8664 3.6878 17 1 0.6228 1.5233 3.6123 18 6 1.7017 3.3795 4.0277 19 6 1.9199 3.3624 5.5621 20 1 0.9758 3.2083 6.0847 21 6 2.5851 4.6598 6.0261 22 8 2.8025 2.2380 5.7643 23 6 2.3608 1.1936 4.8809 24 1 1.6638 0.5373 5.4021 25 6 3.5634 0.3872 4.3864 26 1 -0.3633 -1.0244 0.0830 27 1 -0.3634 0.5840 0.8456 28 1 -0.3634 0.4403 -0.9285 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8521 -0.0693 -2.9317 32 1 2.8376 3.8268 1.1484 33 1 1.3249 3.9021 0.2134 34 1 1.2821 4.0368 1.9877 35 1 3.3854 2.0708 2.4215 36 1 2.5472 0.5075 2.2745 37 1 0.7591 3.8648 3.7742 38 1 2.5358 3.8654 3.5216 39 1 3.5135 4.8093 5.4750 40 1 1.9138 5.4985 5.8414 41 1 2.8018 4.5958 7.0925 42 1 4.0609 -0.0812 5.2357 43 1 3.2244 -0.3831 3.6939 44 1 4.2618 1.0516 3.8774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686396988.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:42 Heat of formation + Delta-G solvation = -67.777788 kcal Electronic energy + Delta-G solvation = -20867.722436 eV Core-core repulsion = 18012.138926 eV Total energy + Delta-G solvation = -2855.583510 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00856 -38.75117 -35.21609 -33.93329 -33.44633 -32.56165 -29.70760 -28.62836 -27.87795 -25.56435 -24.61362 -23.50882 -22.06852 -21.15770 -20.35023 -18.22831 -17.75178 -17.01438 -16.70606 -16.10984 -15.79702 -15.40352 -15.01280 -14.76314 -14.46948 -14.13665 -13.75740 -13.50206 -13.38015 -13.32144 -13.14154 -12.94078 -12.88349 -12.75885 -12.62859 -12.56295 -12.37788 -12.00314 -11.79001 -11.61742 -11.49383 -11.43886 -11.36791 -11.08596 -10.86403 -10.49782 -10.40334 -8.91522 -8.03204 -6.25242 1.34406 1.37145 1.44822 2.38786 2.91925 3.15154 3.37929 3.71224 3.84219 4.08485 4.14669 4.32506 4.40825 4.46996 4.51955 4.61642 4.65946 4.72207 4.73252 4.79213 4.81818 4.90117 4.91084 4.95617 5.04234 5.10849 5.12994 5.18864 5.21880 5.26105 5.32144 5.34087 5.43054 5.46952 5.55224 5.64478 5.81672 6.10163 6.12584 6.20478 6.41321 6.71251 6.96879 7.45758 8.91549 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.006769 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.981727 B = 4135.447138 C = 4550.776853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.047 0.953 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.940 3.060 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.533 5.533 14 C 0.032 3.968 15 C 0.088 3.912 16 C -0.109 4.109 17 H 0.092 0.908 18 C -0.138 4.138 19 C 0.066 3.934 20 H 0.083 0.917 21 C -0.142 4.142 22 O -0.395 6.395 23 C 0.081 3.919 24 H 0.080 0.920 25 C -0.151 4.151 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.003 0.997 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.012 0.988 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 4.342 13.496 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.065 0.935 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.256 5.256 14 C -0.116 4.116 15 C -0.040 4.040 16 C -0.128 4.128 17 H 0.110 0.890 18 C -0.176 4.176 19 C 0.009 3.991 20 H 0.100 0.900 21 C -0.199 4.199 22 O -0.315 6.315 23 C 0.023 3.977 24 H 0.098 0.902 25 C -0.208 4.208 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.021 0.979 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.030 0.970 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.045 4.141 13.533 15.025 hybrid contribution 2.021 0.031 -1.039 2.273 sum -3.023 4.172 12.494 13.515 Atomic orbital electron populations 1.21578 0.96273 0.99968 1.00585 1.21409 0.94520 0.98123 1.00119 1.19107 0.91615 0.91748 0.86452 0.97991 1.22001 0.94123 1.37374 1.05323 0.93493 1.25560 1.01413 0.95075 0.95595 1.69996 1.36104 1.38877 1.09878 0.85841 0.82008 0.78320 0.77178 1.20163 1.20834 1.20146 1.62359 1.54645 1.04102 1.04454 1.22453 0.98173 0.89503 1.01501 1.21963 0.93083 0.99550 0.89401 1.22609 1.00510 0.95907 0.93793 0.88958 1.23417 1.02827 0.95819 0.95506 1.23313 0.93575 0.87302 0.94880 0.89956 1.21776 1.01159 0.95191 1.01798 1.88838 1.55424 1.25231 1.62016 1.22712 0.95881 0.89607 0.89489 0.90168 1.21979 0.97925 0.99772 1.01129 0.93593 0.92092 0.95060 0.92152 0.95084 0.92966 0.97874 0.93656 0.89480 0.96963 0.91801 0.88739 0.91922 0.93213 0.89186 0.91574 0.91642 0.90949 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.85 71.98 0.71 -4.25 16 2 C -0.10 -4.84 5.24 30.60 0.16 -4.68 16 3 C 0.22 10.71 1.67 44.17 0.07 10.79 16 4 H 0.00 0.12 7.79 -2.39 -0.02 0.10 16 5 C -0.55 -29.51 7.43 25.60 0.19 -29.32 16 6 H 0.05 2.56 6.19 -2.91 -0.02 2.54 16 7 C 0.02 1.29 5.29 84.65 0.45 1.74 16 8 N -0.91 -51.67 11.29 21.45 0.24 -51.43 16 9 Si 0.94 43.76 29.54 68.60 2.03 45.79 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.53 -21.57 3.95 -901.50 -3.56 -25.13 16 14 C 0.03 1.20 8.25 127.69 1.05 2.25 16 15 C 0.09 3.30 2.24 86.30 0.19 3.49 16 16 C -0.11 -3.18 3.27 -9.69 -0.03 -3.21 16 17 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 18 C -0.14 -3.53 4.17 32.01 0.13 -3.39 16 19 C 0.07 1.53 3.98 31.28 0.12 1.65 16 20 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 21 C -0.14 -2.76 9.66 71.98 0.70 -2.07 16 22 O -0.39 -11.41 10.89 -148.98 -1.62 -13.03 16 23 C 0.08 2.25 4.04 30.97 0.13 2.38 16 24 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 25 C -0.15 -4.45 8.37 71.98 0.60 -3.84 16 26 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.06 2.24 7.61 -2.39 -0.02 2.22 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 3.23 5.96 -2.39 -0.01 3.21 16 30 H 0.03 1.42 6.41 -2.39 -0.02 1.40 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.00 0.11 7.65 -2.39 -0.02 0.09 16 33 H 0.04 1.72 7.81 -2.39 -0.02 1.70 16 34 H 0.09 2.61 5.00 -2.39 -0.01 2.60 16 35 H 0.01 0.51 5.49 -2.39 -0.01 0.50 16 36 H 0.06 2.58 4.31 -2.39 -0.01 2.57 16 37 H 0.09 2.09 7.30 -2.38 -0.02 2.07 16 38 H 0.06 1.81 6.65 -2.39 -0.02 1.80 16 39 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.07 2.15 6.72 -2.39 -0.02 2.13 16 44 H 0.04 1.52 6.88 -2.38 -0.02 1.51 16 Total: -1.00 -58.93 323.80 2.52 -56.41 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.95 Total: 15.86 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 4.48 Total: -28.47 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -3.32 Total: -76.56 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.62 Total: -13.03 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -58.93 2.52 -56.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686396988.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.370 kcal (2) G-P(sol) polarization free energy of solvation -58.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds