Wall clock time and date at job start Mon Mar 30 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47388 * 2 1 4 4 H 1.09004 * 109.54013 * 54.88996 * 3 2 1 5 5 C 1.53095 * 109.50985 * 174.99797 * 3 2 1 6 6 N 1.47014 * 109.25871 * 176.78496 * 5 3 2 7 7 C 1.46902 * 110.99956 * 177.61021 * 6 5 3 8 8 C 1.53003 * 109.46848 * 170.00140 * 7 6 5 9 9 C 1.53000 * 109.46986 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47355 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99854 * 179.72538 * 13 11 10 16 16 H 1.48498 * 109.47200 * 59.99994 * 15 13 11 17 17 H 1.48498 * 109.46671 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47156 * 300.00008 * 15 13 11 19 19 C 1.47012 * 110.75531 * 301.38638 * 6 5 3 20 20 C 1.53099 * 109.25731 * 58.61385 * 19 6 5 21 21 H 1.08996 * 109.54360 * 63.10937 * 20 19 6 22 22 C 1.53002 * 109.50717 * 183.21959 * 20 19 6 23 23 O 1.43017 * 109.50693 * 294.78837 * 3 2 1 24 24 H 1.08997 * 109.47012 * 299.99753 * 1 2 3 25 25 H 1.08999 * 109.47329 * 60.00094 * 1 2 3 26 26 H 1.09003 * 109.47052 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47440 * 239.99968 * 2 1 3 28 28 H 1.09003 * 109.46989 * 120.00271 * 2 1 3 29 29 H 1.08999 * 109.50558 * 56.85557 * 5 3 2 30 30 H 1.08999 * 109.50963 * 296.71962 * 5 3 2 31 31 H 1.08998 * 109.47251 * 50.00355 * 7 6 5 32 32 H 1.09002 * 109.46978 * 289.99873 * 7 6 5 33 33 H 1.09000 * 109.47521 * 60.00156 * 8 7 6 34 34 H 1.09002 * 109.47113 * 299.99651 * 8 7 6 35 35 H 1.09000 * 109.46966 * 59.99691 * 9 8 7 36 36 H 1.09002 * 109.46807 * 299.99713 * 9 8 7 37 37 H 1.08998 * 109.46837 * 59.99832 * 10 9 8 38 38 H 1.09002 * 109.46926 * 299.99636 * 10 9 8 39 39 H 0.97001 * 119.99646 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.51259 * 178.54882 * 19 6 5 41 41 H 1.09002 * 109.50865 * 298.68522 * 19 6 5 42 42 H 1.09006 * 109.47165 * 179.78894 * 22 20 19 43 43 H 1.09002 * 109.46980 * 299.77969 * 22 20 19 44 44 H 1.09001 * 109.47390 * 59.78197 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6045 1.9831 0.8403 5 6 3.5658 1.4452 0.1258 6 7 4.0562 2.8289 0.0478 7 6 5.5140 2.8813 0.2213 8 6 6.0169 4.2876 -0.1110 9 6 7.5353 4.3420 0.0691 10 6 8.0382 5.7485 -0.2626 11 6 9.5336 5.8022 -0.0846 12 1 10.0716 4.9215 0.2338 13 6 10.2151 6.9758 -0.3281 14 7 9.5600 8.0485 -0.7153 15 14 12.0679 7.0445 -0.1000 16 1 12.7148 6.0599 -1.0039 17 1 12.5562 8.4089 -0.4244 18 1 12.4056 6.7193 1.3090 19 6 3.6539 3.4535 -1.2208 20 6 2.1272 3.4306 -1.3331 21 1 1.6937 4.0291 -0.5320 22 6 1.7058 4.0063 -2.6866 23 8 1.6663 2.0811 -1.2239 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9989 0.8593 -0.6849 30 1 3.8529 1.0108 1.0834 31 1 5.9855 2.1598 -0.4458 32 1 5.7659 2.6400 1.2540 33 1 5.5454 5.0092 0.5561 34 1 5.7650 4.5289 -1.1437 35 1 8.0064 3.6205 -0.5983 36 1 7.7875 4.1006 1.1017 37 1 7.5670 6.4696 0.4052 38 1 7.7859 5.9904 -1.2951 39 1 10.0395 8.8740 -0.8869 40 1 4.0052 4.4849 -1.2463 41 1 4.0884 2.8997 -2.0531 42 1 0.6189 3.9863 -2.7674 43 1 2.0572 5.0348 -2.7692 44 1 2.1409 3.4082 -3.4873 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:14 Heat of formation + Delta-G solvation = -74.676041 kcal Electronic energy + Delta-G solvation = -19315.635687 eV Core-core repulsion = 16459.753047 eV Total energy + Delta-G solvation = -2855.882641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.96403 -36.63833 -34.66237 -34.13619 -32.17315 -31.54729 -29.24108 -27.58104 -26.19589 -24.41819 -22.76426 -21.82820 -20.91972 -20.35516 -19.91048 -16.77008 -16.21450 -16.20338 -15.55198 -15.06781 -14.79940 -14.48382 -14.18664 -14.03436 -13.87578 -13.15395 -12.68666 -12.55245 -12.38878 -12.25336 -12.08950 -11.91357 -11.67809 -11.56698 -11.24624 -11.07220 -11.02445 -10.95333 -10.62939 -10.51344 -10.43762 -10.28304 -9.65810 -9.57131 -9.24220 -9.01850 -8.33952 -8.31570 -5.97920 -4.00187 3.34096 3.38281 3.40875 3.53979 3.79984 4.47370 4.55844 4.78298 4.84121 4.91723 5.05110 5.10368 5.16967 5.26283 5.31692 5.37436 5.40748 5.48345 5.54754 5.57797 5.67476 5.71837 5.73318 5.77729 5.85860 5.89116 6.00637 6.04763 6.09805 6.15012 6.25490 6.46628 6.78567 6.93237 6.99493 7.02594 7.17647 7.21224 7.70113 7.85942 8.02790 8.45762 9.06990 9.63601 11.13436 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.042873 B = 0.003289 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.937764 B = 8511.846661 C = 9027.170137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.095 3.905 4 H 0.065 0.935 5 C 0.023 3.977 6 N -0.539 5.539 7 C 0.056 3.944 8 C -0.121 4.121 9 C -0.109 4.109 10 C 0.022 3.978 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.018 3.982 20 C 0.090 3.910 21 H 0.065 0.935 22 C -0.144 4.144 23 O -0.380 6.380 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.261 0.739 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.888 -13.649 0.022 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.037 3.963 4 H 0.083 0.917 5 C -0.106 4.106 6 N -0.263 5.263 7 C -0.071 4.071 8 C -0.158 4.158 9 C -0.147 4.147 10 C -0.015 4.015 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.110 4.110 20 C 0.032 3.968 21 H 0.083 0.917 22 C -0.202 4.202 23 O -0.300 6.300 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.176 -13.285 0.219 22.515 hybrid contribution 1.721 -0.202 -0.329 1.764 sum -16.456 -13.487 -0.110 21.277 Atomic orbital electron populations 1.21693 0.95107 1.01376 1.02337 1.21519 0.96826 0.94313 1.02663 1.22158 0.92855 0.93826 0.87457 0.91704 1.22801 0.95899 0.90099 1.01794 1.62305 1.13753 1.16514 1.33741 1.22269 0.85132 0.98500 1.01171 1.21811 0.98004 0.94739 1.01282 1.21598 0.91886 1.01012 1.00199 1.19078 0.95505 0.90202 0.96711 1.21250 0.92910 0.96369 1.45414 0.92825 1.25035 0.98333 0.95789 0.95346 1.69958 1.35675 1.01249 1.46702 0.86666 0.85745 0.77007 0.78627 1.20287 1.21282 1.20240 1.22939 0.95773 1.01652 0.90676 1.22163 0.92813 0.83407 0.98397 0.91705 1.21747 1.02039 1.00909 0.95458 1.87943 1.76829 1.26482 1.38753 0.92878 0.91950 0.92864 0.91259 0.90588 0.94181 0.89918 0.95033 0.90692 0.91592 0.92340 0.93662 0.93371 0.96622 0.96782 0.92977 0.88545 0.94103 0.91780 0.90684 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.82 16 2 C -0.12 -1.00 5.64 -26.74 -0.15 -1.15 16 3 C 0.10 1.03 2.80 -26.69 -0.07 0.95 16 4 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 5 C 0.02 0.26 4.91 -3.71 -0.02 0.25 16 6 N -0.54 -7.36 4.88 -234.31 -1.14 -8.50 16 7 C 0.06 0.83 5.28 -3.82 -0.02 0.81 16 8 C -0.12 -2.08 4.48 -26.73 -0.12 -2.20 16 9 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 15 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.02 0.23 4.22 -3.71 -0.02 0.22 16 20 C 0.09 1.06 3.43 -26.68 -0.09 0.97 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.14 -1.42 9.57 37.16 0.36 -1.06 16 23 O -0.38 -4.69 9.66 -35.23 -0.34 -5.03 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.56 7.83 -51.93 -0.41 0.16 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.10 1.31 6.05 -51.93 -0.31 1.00 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -30.62 344.36 -9.65 -40.28 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -8.62 Total: -4.42 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -0.46 Total: -17.82 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.41 Total: -35.10 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.34 Total: -5.03 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.62 -9.65 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.398 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds