Wall clock time and date at job start Mon Mar 30 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46847 * 2 1 4 4 H 1.08998 * 110.57071 * 307.67969 * 3 2 1 5 5 C 1.54483 * 110.51319 * 70.35900 * 3 2 1 6 6 O 1.44428 * 104.80347 * 94.66245 * 5 3 2 7 7 C 1.44427 * 105.27469 * 40.51389 * 6 5 3 8 8 C 1.54480 * 104.80417 * 319.48795 * 7 6 5 9 9 H 1.08998 * 110.51098 * 265.19901 * 8 7 6 10 10 N 1.46895 * 110.51253 * 142.61877 * 8 7 6 11 11 C 1.46904 * 111.00215 * 185.40674 * 10 8 7 12 12 C 1.46906 * 111.00098 * 61.45857 * 10 8 7 13 13 C 1.52998 * 109.47410 * 189.99971 * 12 10 8 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46929 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 H 1.08998 * 109.47551 * 60.00042 * 1 2 3 25 25 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46789 * 299.99745 * 1 2 3 27 27 H 1.09001 * 109.46789 * 240.00255 * 2 1 3 28 28 H 1.08996 * 109.47044 * 119.99976 * 2 1 3 29 29 H 1.08997 * 110.37227 * 335.83786 * 5 3 2 30 30 H 1.08995 * 110.47022 * 213.54035 * 5 3 2 31 31 H 1.08999 * 110.37580 * 200.65343 * 7 6 5 32 32 H 1.09003 * 110.37042 * 78.31947 * 7 6 5 33 33 H 1.08999 * 109.46978 * 296.04775 * 11 10 8 34 34 H 1.09002 * 109.46845 * 56.05186 * 11 10 8 35 35 H 1.08997 * 109.47421 * 176.04898 * 11 10 8 36 36 H 1.09004 * 109.47333 * 69.99290 * 12 10 8 37 37 H 1.09006 * 109.46525 * 309.99996 * 12 10 8 38 38 H 1.09000 * 109.46986 * 59.99535 * 13 12 10 39 39 H 1.09002 * 109.46857 * 299.99400 * 13 12 10 40 40 H 1.09000 * 109.47441 * 60.00090 * 14 13 12 41 41 H 1.09002 * 109.47087 * 299.99536 * 14 13 12 42 42 H 1.09001 * 109.47671 * 60.00109 * 15 14 13 43 43 H 1.09006 * 109.47297 * 299.99829 * 15 14 13 44 44 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5795 2.0115 -0.8077 5 6 1.7618 2.1150 1.3627 6 8 2.9792 1.9345 2.1185 7 6 4.0496 2.1594 1.1753 8 6 3.5796 1.4725 -0.1261 9 1 3.9794 0.4604 -0.1896 10 7 3.9848 2.2591 -1.2986 11 6 3.4344 1.6848 -2.5337 12 6 5.4473 2.3723 -1.3770 13 6 5.8230 3.3937 -2.4523 14 6 7.3463 3.5119 -2.5334 15 6 7.7220 4.5329 -3.6092 16 6 9.2224 4.6499 -3.6887 17 1 9.8456 4.0557 -3.0367 18 6 9.7994 5.5153 -4.5936 19 7 9.0405 6.2392 -5.3871 20 14 11.6592 5.6608 -4.6916 21 1 12.0239 6.6507 -5.7367 22 1 12.1906 6.1075 -3.3789 23 1 12.2415 4.3393 -5.0376 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.9276 1.6248 1.8645 30 1 1.5524 3.1762 1.2284 31 1 4.9727 1.7034 1.5330 32 1 4.1920 3.2274 1.0105 33 1 3.8539 0.6912 -2.6908 34 1 2.3501 1.6123 -2.4489 35 1 3.6907 2.3250 -3.3778 36 1 5.8737 1.4022 -1.6325 37 1 5.8386 2.6986 -0.4133 38 1 5.3967 4.3638 -2.1968 39 1 5.4318 3.0673 -3.4159 40 1 7.7730 2.5420 -2.7888 41 1 7.7372 3.8385 -1.5697 42 1 7.2954 5.5030 -3.3544 43 1 7.3311 4.2059 -4.5728 44 1 8.0748 6.1639 -5.3360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688224899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:44 Heat of formation + Delta-G solvation = -73.728815 kcal Electronic energy + Delta-G solvation = -19342.944644 eV Core-core repulsion = 16487.103078 eV Total energy + Delta-G solvation = -2855.841566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24202 -37.19747 -34.93546 -34.30353 -32.31855 -29.91427 -28.78730 -28.16442 -25.73695 -24.16387 -23.80953 -22.00771 -20.58712 -20.26612 -20.08294 -16.98458 -16.67189 -16.45635 -15.78858 -15.02247 -14.73105 -14.48948 -14.17757 -13.94707 -13.69665 -13.45135 -12.94474 -12.86505 -12.60150 -12.38068 -12.13859 -11.93265 -11.79364 -11.51720 -11.19045 -10.96653 -10.94249 -10.85657 -10.76162 -10.51819 -10.47734 -10.09925 -9.88937 -9.74073 -9.60362 -8.48776 -8.40896 -8.28873 -6.32546 -4.01046 3.45366 3.47647 3.60090 3.66367 3.95619 4.21788 4.52700 4.57958 4.59838 4.85433 4.91300 5.06536 5.13005 5.14896 5.22903 5.28946 5.39305 5.43769 5.44994 5.52669 5.55156 5.61526 5.66448 5.67465 5.74378 5.79623 5.85190 5.88138 6.01277 6.03584 6.12803 6.39990 6.54893 6.68802 6.82914 6.94175 7.01519 7.12027 7.46640 7.60228 8.27150 8.50634 8.92984 9.71436 11.08231 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.045226 B = 0.003208 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.958506 B = 8725.174201 C = 9035.098177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.118 4.118 4 H 0.095 0.905 5 C 0.051 3.949 6 O -0.376 6.376 7 C 0.051 3.949 8 C 0.053 3.947 9 H 0.054 0.946 10 N -0.533 5.533 11 C 0.020 3.980 12 C 0.053 3.947 13 C -0.114 4.114 14 C -0.102 4.102 15 C 0.009 3.991 16 C -0.602 4.602 17 H 0.047 0.953 18 C 0.013 3.987 19 N -0.915 5.915 20 Si 1.068 2.932 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.006 0.994 43 H 0.005 0.995 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.804 -12.086 11.430 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.137 4.137 4 H 0.113 0.887 5 C -0.026 4.026 6 O -0.294 6.294 7 C -0.026 4.026 8 C -0.056 4.056 9 H 0.072 0.928 10 N -0.258 5.258 11 C -0.128 4.128 12 C -0.074 4.074 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.028 4.028 16 C -0.640 4.640 17 H 0.066 0.934 18 C -0.191 4.191 19 N -0.551 5.551 20 Si 0.897 3.103 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.215 1.215 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.745 -10.895 10.932 22.048 hybrid contribution -0.896 -1.608 0.414 1.887 sum -16.642 -12.502 11.346 23.706 Atomic orbital electron populations 1.21815 0.95533 1.01740 1.01926 1.21570 0.96036 0.95468 1.02280 1.22656 0.94809 0.97216 0.99031 0.88670 1.23478 0.88369 0.99850 0.90873 1.89113 1.15239 1.91887 1.33179 1.23500 0.90950 1.00874 0.87294 1.23080 0.94925 0.95882 0.91710 0.92810 1.62149 1.11510 1.50069 1.02053 1.22465 0.99895 0.97826 0.92575 1.22289 0.85663 0.98766 1.00686 1.21678 0.97868 0.98470 0.97156 1.21468 0.92126 1.00126 1.00338 1.19210 0.96942 0.93514 0.93162 1.22095 0.91809 1.26984 1.23134 0.93445 1.25859 1.07016 0.93154 0.93042 1.70779 1.06845 1.39585 1.37914 0.83556 0.74286 0.76250 0.76232 1.20769 1.21451 1.21506 0.92598 0.92635 0.92547 0.91904 0.91539 0.89166 0.92052 0.89248 0.90798 0.95762 0.91488 0.90544 0.94943 0.90881 0.91721 0.92558 0.93534 0.93270 0.97529 0.97688 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.78 37.16 0.36 -0.64 16 2 C -0.12 -0.92 5.18 -26.73 -0.14 -1.06 16 3 C -0.12 -1.09 2.21 -89.05 -0.20 -1.29 16 4 H 0.10 0.90 6.49 -51.93 -0.34 0.56 16 5 C 0.05 0.49 7.04 37.94 0.27 0.76 16 6 O -0.38 -4.55 11.65 -35.23 -0.41 -4.96 16 7 C 0.05 0.58 5.93 37.93 0.22 0.81 16 8 C 0.05 0.58 2.48 -66.14 -0.16 0.42 16 9 H 0.05 0.60 7.74 -51.93 -0.40 0.20 16 10 N -0.53 -6.63 4.56 -232.99 -1.06 -7.69 16 11 C 0.02 0.23 9.06 60.07 0.54 0.77 16 12 C 0.05 0.75 4.82 -3.82 -0.02 0.73 16 13 C -0.11 -1.94 5.14 -26.73 -0.14 -2.08 16 14 C -0.10 -2.14 5.15 -26.73 -0.14 -2.28 16 15 C 0.01 0.23 4.28 -27.88 -0.12 0.11 16 16 C -0.60 -17.64 9.11 -34.44 -0.31 -17.96 16 17 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 18 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 19 N -0.91 -28.69 13.65 55.43 0.76 -27.93 16 20 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.35 6.73 -51.93 -0.35 0.00 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.09 0.72 6.48 -51.93 -0.34 0.39 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.90 7.89 -51.93 -0.41 0.49 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.65 6.25 -51.93 -0.32 0.33 16 35 H 0.08 0.93 6.47 -51.93 -0.34 0.59 16 36 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 37 H 0.07 1.00 6.77 -51.93 -0.35 0.65 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.96 6.55 -51.93 -0.34 0.62 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 43 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 44 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -31.44 338.60 -8.78 -40.22 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -8.16 Total: -4.02 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 0.08 Total: -21.42 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.30 Total: -35.63 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.41 Total: -4.96 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.44 -8.78 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688224899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.507 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds