Wall clock time and date at job start Mon Mar 30 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46847 * 2 1 4 4 H 1.08998 * 110.57071 * 307.67969 * 3 2 1 5 5 C 1.54483 * 110.51319 * 70.35900 * 3 2 1 6 6 O 1.44428 * 104.80347 * 94.66245 * 5 3 2 7 7 C 1.44427 * 105.27469 * 40.51389 * 6 5 3 8 8 C 1.54480 * 104.80417 * 319.48795 * 7 6 5 9 9 H 1.08998 * 110.51098 * 265.19901 * 8 7 6 10 10 N 1.46895 * 110.51253 * 142.61877 * 8 7 6 11 11 C 1.46904 * 111.00215 * 185.40674 * 10 8 7 12 12 C 1.46906 * 111.00098 * 61.45857 * 10 8 7 13 13 C 1.52998 * 109.47410 * 189.99971 * 12 10 8 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46929 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 H 1.08998 * 109.47551 * 60.00042 * 1 2 3 25 25 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46789 * 299.99745 * 1 2 3 27 27 H 1.09001 * 109.46789 * 240.00255 * 2 1 3 28 28 H 1.08996 * 109.47044 * 119.99976 * 2 1 3 29 29 H 1.08997 * 110.37227 * 335.83786 * 5 3 2 30 30 H 1.08995 * 110.47022 * 213.54035 * 5 3 2 31 31 H 1.08999 * 110.37580 * 200.65343 * 7 6 5 32 32 H 1.09003 * 110.37042 * 78.31947 * 7 6 5 33 33 H 1.08999 * 109.46978 * 296.04775 * 11 10 8 34 34 H 1.09002 * 109.46845 * 56.05186 * 11 10 8 35 35 H 1.08997 * 109.47421 * 176.04898 * 11 10 8 36 36 H 1.09004 * 109.47333 * 69.99290 * 12 10 8 37 37 H 1.09006 * 109.46525 * 309.99996 * 12 10 8 38 38 H 1.09000 * 109.46986 * 59.99535 * 13 12 10 39 39 H 1.09002 * 109.46857 * 299.99400 * 13 12 10 40 40 H 1.09000 * 109.47441 * 60.00090 * 14 13 12 41 41 H 1.09002 * 109.47087 * 299.99536 * 14 13 12 42 42 H 1.09001 * 109.47671 * 60.00109 * 15 14 13 43 43 H 1.09006 * 109.47297 * 299.99829 * 15 14 13 44 44 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5795 2.0115 -0.8077 5 6 1.7618 2.1150 1.3627 6 8 2.9792 1.9345 2.1185 7 6 4.0496 2.1594 1.1753 8 6 3.5796 1.4725 -0.1261 9 1 3.9794 0.4604 -0.1896 10 7 3.9848 2.2591 -1.2986 11 6 3.4344 1.6848 -2.5337 12 6 5.4473 2.3723 -1.3770 13 6 5.8230 3.3937 -2.4523 14 6 7.3463 3.5119 -2.5334 15 6 7.7220 4.5329 -3.6092 16 6 9.2224 4.6499 -3.6887 17 1 9.8456 4.0557 -3.0367 18 6 9.7994 5.5153 -4.5936 19 7 9.0405 6.2392 -5.3871 20 14 11.6592 5.6608 -4.6916 21 1 12.0239 6.6507 -5.7367 22 1 12.1906 6.1075 -3.3789 23 1 12.2415 4.3393 -5.0376 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.9276 1.6248 1.8645 30 1 1.5524 3.1762 1.2284 31 1 4.9727 1.7034 1.5330 32 1 4.1920 3.2274 1.0105 33 1 3.8539 0.6912 -2.6908 34 1 2.3501 1.6123 -2.4489 35 1 3.6907 2.3250 -3.3778 36 1 5.8737 1.4022 -1.6325 37 1 5.8386 2.6986 -0.4133 38 1 5.3967 4.3638 -2.1968 39 1 5.4318 3.0673 -3.4159 40 1 7.7730 2.5420 -2.7888 41 1 7.7372 3.8385 -1.5697 42 1 7.2954 5.5030 -3.3544 43 1 7.3311 4.2059 -4.5728 44 1 8.0748 6.1639 -5.3360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688224899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:44 Heat of formation + Delta-G solvation = -93.120303 kcal Electronic energy + Delta-G solvation = -19343.785522 eV Core-core repulsion = 16487.103078 eV Total energy + Delta-G solvation = -2856.682444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09911 -38.30193 -36.46779 -35.38737 -34.12303 -30.99841 -29.93915 -29.22382 -27.09450 -25.48122 -24.86218 -23.47763 -22.00185 -21.38072 -20.98390 -18.86858 -17.87780 -17.32075 -16.79934 -16.14515 -15.82629 -15.64013 -15.48218 -15.19836 -15.02956 -14.66545 -14.25697 -14.08075 -13.89636 -13.53483 -13.10779 -13.01059 -12.74210 -12.62494 -12.50202 -12.36515 -12.29236 -12.10698 -11.94372 -11.84000 -11.61037 -11.46731 -11.42756 -11.34154 -10.74198 -10.62779 -10.55348 -9.39976 -8.70450 -6.40864 1.51441 1.60383 1.79830 2.55940 2.67102 3.10917 3.14530 3.42155 3.74660 3.88019 3.93152 4.06857 4.09766 4.19680 4.31159 4.39694 4.44275 4.46300 4.53572 4.57504 4.61302 4.69016 4.72145 4.76702 4.78464 4.83641 4.85597 4.97714 5.04665 5.07298 5.08405 5.15370 5.20276 5.27796 5.42077 5.46888 5.55140 5.70151 5.97249 6.00222 6.11618 6.17963 6.56922 7.41925 8.70433 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.045226 B = 0.003208 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.958506 B = 8725.174201 C = 9035.098177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.112 4.112 4 H 0.096 0.904 5 C 0.048 3.952 6 O -0.392 6.392 7 C 0.050 3.950 8 C 0.054 3.946 9 H 0.055 0.945 10 N -0.539 5.539 11 C 0.020 3.980 12 C 0.063 3.937 13 C -0.102 4.102 14 C -0.091 4.091 15 C 0.008 3.992 16 C -0.622 4.622 17 H 0.051 0.949 18 C -0.042 4.042 19 N -0.939 5.939 20 Si 1.119 2.881 21 H -0.283 1.283 22 H -0.268 1.268 23 H -0.268 1.268 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.051 0.949 42 H -0.014 1.014 43 H -0.014 1.014 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.984 -13.310 12.291 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.130 4.130 4 H 0.114 0.886 5 C -0.029 4.029 6 O -0.311 6.311 7 C -0.027 4.027 8 C -0.054 4.054 9 H 0.073 0.927 10 N -0.264 5.264 11 C -0.127 4.127 12 C -0.065 4.065 13 C -0.140 4.140 14 C -0.129 4.129 15 C -0.029 4.029 16 C -0.660 4.660 17 H 0.069 0.931 18 C -0.239 4.239 19 N -0.576 5.576 20 Si 0.939 3.061 21 H -0.208 1.208 22 H -0.193 1.193 23 H -0.193 1.193 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.004 0.996 43 H 0.004 0.996 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.956 -12.138 11.810 23.268 hybrid contribution -0.902 -1.220 0.155 1.526 sum -16.859 -13.358 11.965 24.613 Atomic orbital electron populations 1.21802 0.94360 1.02346 1.02306 1.21530 0.97006 0.94302 1.02066 1.22627 0.93445 0.98145 0.98819 0.88601 1.23633 0.88041 1.00191 0.91017 1.89096 1.16112 1.91938 1.33959 1.23499 0.91291 1.00350 0.87594 1.23101 0.96179 0.95470 0.90676 0.92664 1.62094 1.10256 1.51020 1.03071 1.22488 1.01021 0.97586 0.91636 1.22078 0.87073 0.97748 0.99577 1.21483 0.94897 0.99178 0.98422 1.21295 0.94960 0.98346 0.98316 1.19181 0.95597 0.94059 0.94060 1.22565 0.93420 1.26904 1.23088 0.93081 1.27521 1.11568 0.92462 0.92359 1.70919 1.06275 1.41080 1.39371 0.82930 0.68739 0.77256 0.77165 1.20803 1.19297 1.19292 0.92331 0.91953 0.92070 0.91885 0.91992 0.87480 0.92067 0.88690 0.91827 0.95381 0.89686 0.91696 0.94599 0.90390 0.92578 0.92674 0.93246 0.93039 0.99564 0.99551 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.78 71.98 0.70 -0.92 16 2 C -0.11 -1.53 5.18 30.59 0.16 -1.37 16 3 C -0.11 -1.85 2.21 -9.77 -0.02 -1.87 16 4 H 0.10 1.60 6.49 -2.39 -0.02 1.59 16 5 C 0.05 0.83 7.04 72.49 0.51 1.34 16 6 O -0.39 -8.99 11.65 -148.98 -1.74 -10.73 16 7 C 0.05 1.08 5.93 72.49 0.43 1.51 16 8 C 0.05 1.11 2.48 45.93 0.11 1.22 16 9 H 0.06 1.13 7.74 -2.39 -0.02 1.11 16 10 N -0.54 -12.71 4.56 -891.04 -4.06 -16.77 16 11 C 0.02 0.43 9.06 127.69 1.16 1.59 16 12 C 0.06 1.69 4.82 86.30 0.42 2.11 16 13 C -0.10 -3.44 5.14 30.59 0.16 -3.29 16 14 C -0.09 -3.79 5.15 30.59 0.16 -3.64 16 15 C 0.01 0.44 4.28 29.85 0.13 0.56 16 16 C -0.62 -36.68 9.11 25.60 0.23 -36.44 16 17 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 18 C -0.04 -2.51 5.46 84.65 0.46 -2.05 16 19 N -0.94 -59.88 13.65 21.45 0.29 -59.58 16 20 Si 1.12 51.11 29.90 68.60 2.05 53.16 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.60 6.73 -2.39 -0.02 0.58 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 29 H 0.11 1.48 6.48 -2.39 -0.02 1.47 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.51 7.89 -2.39 -0.02 1.49 16 33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 1.48 6.25 -2.39 -0.01 1.46 16 35 H 0.06 1.52 6.47 -2.39 -0.02 1.51 16 36 H 0.04 0.95 8.12 -2.38 -0.02 0.93 16 37 H 0.08 2.03 6.77 -2.38 -0.02 2.01 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 1.87 6.55 -2.39 -0.02 1.85 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 42 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 43 H -0.01 -0.79 8.01 -2.38 -0.02 -0.81 16 44 H 0.25 16.45 7.22 -92.71 -0.67 15.78 16 Total: -1.00 -67.16 338.60 2.18 -64.98 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.03 Total: 10.18 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 4.60 Total: -41.24 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -3.77 Total: -76.35 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -1.74 Total: -10.73 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -67.16 2.18 -64.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688224899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.142 kcal (2) G-P(sol) polarization free energy of solvation -67.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds