Wall clock time and date at job start Mon Mar 30 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47238 * 2 1 4 4 N 1.46896 * 109.47610 * 120.00026 * 2 1 3 5 5 C 1.46897 * 111.00018 * 312.21422 * 4 2 1 6 6 C 1.53003 * 109.47332 * 204.33296 * 5 4 2 7 7 C 1.53009 * 109.46820 * 60.56320 * 6 5 4 8 8 C 1.52993 * 109.47200 * 180.55901 * 6 5 4 9 9 O 1.42899 * 109.47346 * 300.56314 * 6 5 4 10 10 C 1.46898 * 111.00135 * 76.16762 * 4 2 1 11 11 C 1.53001 * 109.46986 * 97.56128 * 10 4 2 12 12 C 1.50705 * 115.54772 * 194.76275 * 11 10 4 13 13 H 1.07996 * 120.00081 * 146.37190 * 12 11 10 14 14 C 1.37874 * 120.00410 * 326.36766 * 12 11 10 15 15 N 1.31511 * 120.00192 * 162.48385 * 14 12 11 16 16 Si 1.86803 * 119.99652 * 342.49048 * 14 12 11 17 17 H 1.48505 * 109.47263 * 89.18982 * 16 14 12 18 18 H 1.48499 * 109.46886 * 209.18665 * 16 14 12 19 19 H 1.48492 * 109.47294 * 329.18602 * 16 14 12 20 20 C 1.53003 * 117.49999 * 49.09672 * 11 10 4 21 21 C 1.52996 * 117.50356 * 340.43140 * 11 10 4 22 22 H 1.09004 * 109.46980 * 299.99476 * 1 2 3 23 23 H 1.08997 * 109.47553 * 59.99737 * 1 2 3 24 24 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46980 * 240.00524 * 2 1 3 26 26 H 1.08991 * 109.47428 * 184.87085 * 3 2 1 27 27 H 1.09007 * 109.46541 * 304.86769 * 3 2 1 28 28 H 1.08995 * 109.47032 * 64.86348 * 3 2 1 29 29 H 1.08997 * 109.46967 * 84.33405 * 5 4 2 30 30 H 1.09001 * 109.47212 * 324.33290 * 5 4 2 31 31 H 1.08996 * 109.46954 * 67.31273 * 7 6 5 32 32 H 1.09002 * 109.46650 * 187.31528 * 7 6 5 33 33 H 1.08999 * 109.46936 * 307.31287 * 7 6 5 34 34 H 1.09006 * 109.47290 * 60.00056 * 8 6 5 35 35 H 1.09007 * 109.47523 * 180.02562 * 8 6 5 36 36 H 1.08995 * 109.47603 * 300.00329 * 8 6 5 37 37 H 0.96700 * 113.99790 * 300.00142 * 9 6 5 38 38 H 1.08999 * 109.47282 * 217.56272 * 10 4 2 39 39 H 1.09005 * 109.47147 * 337.56306 * 10 4 2 40 40 H 0.97001 * 120.00020 * 180.02562 * 15 14 12 41 41 H 1.08992 * 117.49310 * 359.97438 * 20 11 10 42 42 H 1.08994 * 117.49760 * 145.01942 * 20 11 10 43 43 H 1.08993 * 117.50697 * 214.98048 * 21 11 10 44 44 H 1.09003 * 117.49344 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.3265 -0.2146 2.4031 6 6 2.2083 -0.4572 3.6297 7 6 3.5222 0.3110 3.4731 8 6 1.4805 0.0277 4.8850 9 8 2.4846 -1.8542 3.7490 10 6 1.8861 -2.1485 1.0581 11 6 3.2232 -2.7422 0.6102 12 6 3.1652 -4.1557 0.0905 13 1 3.8323 -4.4685 -0.6991 14 6 2.2607 -5.0495 0.6232 15 7 1.9606 -6.1501 -0.0311 16 14 1.4613 -4.6971 2.2744 17 1 0.2155 -3.9166 2.0647 18 1 1.1348 -5.9787 2.9498 19 1 2.3982 -3.9160 3.1213 20 6 4.4760 -2.3244 1.3828 21 6 4.2371 -1.7941 -0.0332 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8932 -0.5138 -0.8901 26 1 3.1264 1.4438 -0.0873 27 1 1.6071 1.9809 -0.8433 28 1 1.7495 1.9306 0.9303 29 1 0.3864 -0.7538 2.5191 30 1 1.1240 0.8521 2.3065 31 1 3.3238 1.3820 3.5125 32 1 4.2015 0.0373 4.2805 33 1 3.9774 0.0608 2.5148 34 1 0.5444 -0.5195 4.9966 35 1 2.1089 -0.1447 5.7589 36 1 1.2698 1.0933 4.7941 37 1 1.6956 -2.4038 3.8515 38 1 1.5989 -2.5817 2.0161 39 1 1.1216 -2.3728 0.3141 40 1 1.3239 -6.7788 0.3435 41 1 4.3475 -1.6263 2.2099 42 1 5.2583 -3.0717 1.5149 43 1 4.8626 -2.1927 -0.8319 44 1 3.9514 -0.7474 -0.1377 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691020666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:48 Heat of formation + Delta-G solvation = -6.849675 kcal Electronic energy + Delta-G solvation = -21763.572270 eV Core-core repulsion = 18910.630801 eV Total energy + Delta-G solvation = -2852.941469 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.49602 -36.87669 -35.58695 -32.23706 -32.06799 -30.91516 -27.45172 -26.89855 -26.76080 -25.69552 -23.58626 -21.09165 -20.30994 -19.40927 -18.71364 -16.33660 -16.29538 -15.63479 -15.37313 -14.87088 -14.36568 -14.13924 -13.52326 -13.24544 -13.01948 -12.81503 -12.58910 -12.15431 -12.09190 -11.95984 -11.90931 -11.63295 -11.54142 -11.29297 -11.19050 -11.03859 -10.78005 -10.56827 -10.36880 -10.22576 -9.91798 -9.62287 -9.43898 -9.18851 -8.93239 -8.46303 -8.00824 -7.65250 -6.07607 -3.94357 3.20507 3.40253 3.49854 4.19521 4.44150 4.67407 5.03118 5.05201 5.14278 5.16727 5.24759 5.39997 5.49660 5.57943 5.63350 5.71301 5.71956 5.79869 5.88714 5.96188 5.99711 6.06285 6.13404 6.23038 6.24078 6.30320 6.32116 6.35643 6.42056 6.54671 6.66800 6.78183 6.96985 7.01020 7.28161 7.39793 7.60862 7.63861 7.70960 7.98132 8.01703 8.67400 9.01575 9.60381 11.05045 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.010543 C = 0.009035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.928554 B = 2655.248754 C = 3098.180311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.072 3.928 3 C -0.138 4.138 4 N -0.515 5.515 5 C 0.026 3.974 6 C 0.124 3.876 7 C -0.133 4.133 8 C -0.178 4.178 9 O -0.534 6.534 10 C 0.081 3.919 11 C 0.019 3.981 12 C -0.481 4.481 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.894 5.894 16 Si 0.865 3.135 17 H -0.289 1.289 18 H -0.304 1.304 19 H -0.224 1.224 20 C -0.192 4.192 21 C -0.189 4.189 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.362 0.638 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.262 0.738 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 15.146 6.318 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.036 4.036 3 C -0.195 4.195 4 N -0.238 5.238 5 C -0.102 4.102 6 C 0.083 3.917 7 C -0.190 4.190 8 C -0.236 4.236 9 O -0.342 6.342 10 C -0.045 4.045 11 C 0.017 3.983 12 C -0.518 4.518 13 H 0.090 0.910 14 C -0.128 4.128 15 N -0.531 5.531 16 Si 0.696 3.304 17 H -0.217 1.217 18 H -0.232 1.232 19 H -0.149 1.149 20 C -0.229 4.229 21 C -0.226 4.226 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.211 0.789 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.142 15.281 6.297 16.665 hybrid contribution -2.116 -0.415 0.768 2.289 sum -4.258 14.866 7.065 17.001 Atomic orbital electron populations 1.22507 0.98254 1.02018 1.01521 1.21818 0.92052 0.95201 0.94579 1.21813 1.01738 0.95281 1.00705 1.62072 1.55054 1.06085 1.00556 1.22808 0.94859 1.00336 0.92234 1.21256 0.95670 0.83220 0.91589 1.21736 0.95658 0.97461 1.04120 1.22512 1.00546 1.01480 0.99047 1.86992 1.35848 1.15741 1.95569 1.22169 0.98153 0.84565 0.99604 1.19155 0.86377 0.93546 0.99188 1.20475 1.19638 0.91890 1.19814 0.90956 1.24966 0.95716 0.95171 0.96969 1.69988 1.33600 1.12411 1.37140 0.87365 0.79640 0.76526 0.86918 1.21680 1.23174 1.14895 1.23070 1.02927 1.03137 0.93780 1.22739 1.05642 0.98475 0.95770 0.92913 0.92544 0.92539 0.89333 0.91967 0.92988 0.93139 0.95162 0.90589 0.92682 0.92943 0.89218 0.92960 0.91784 0.92045 0.78934 0.91704 0.93970 0.92795 0.89028 0.91750 0.91845 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.48 37.15 0.32 -2.24 16 2 C 0.07 1.09 1.72 -67.72 -0.12 0.97 16 3 C -0.14 -1.69 9.31 37.16 0.35 -1.35 16 4 N -0.51 -8.65 1.91 -226.65 -0.43 -9.08 16 5 C 0.03 0.39 2.62 -3.82 -0.01 0.38 16 6 C 0.12 1.79 1.14 -90.62 -0.10 1.68 16 7 C -0.13 -1.85 8.09 37.16 0.30 -1.55 16 8 C -0.18 -2.06 8.81 37.15 0.33 -1.73 16 9 O -0.53 -9.47 8.48 -35.23 -0.30 -9.77 16 10 C 0.08 1.72 2.51 -3.82 -0.01 1.71 16 11 C 0.02 0.45 1.87 -155.66 -0.29 0.16 16 12 C -0.48 -13.76 9.55 -34.44 -0.33 -14.09 16 13 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 14 C 0.07 2.13 5.38 -17.82 -0.10 2.03 16 15 N -0.89 -27.47 13.96 55.43 0.77 -26.70 16 16 Si 0.86 20.93 23.08 -169.99 -3.92 17.00 16 17 H -0.29 -6.72 6.87 56.52 0.39 -6.34 16 18 H -0.30 -7.59 7.11 56.52 0.40 -7.18 16 19 H -0.22 -5.08 4.65 56.52 0.26 -4.81 16 20 C -0.19 -4.27 9.53 -26.69 -0.25 -4.53 16 21 C -0.19 -4.07 9.29 -26.69 -0.25 -4.31 16 22 H 0.05 0.67 6.52 -51.93 -0.34 0.33 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.89 6.99 -51.93 -0.36 0.53 16 25 H 0.09 1.51 7.47 -51.93 -0.39 1.13 16 26 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 27 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.05 0.58 6.46 -51.93 -0.34 0.24 16 29 H 0.03 0.46 7.51 -51.93 -0.39 0.07 16 30 H 0.08 0.96 5.69 -51.93 -0.30 0.67 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.44 5.48 -51.93 -0.28 1.15 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.36 6.18 6.08 45.56 0.28 6.46 16 38 H 0.07 1.38 1.19 -51.93 -0.06 1.32 16 39 H 0.04 0.97 6.55 -51.93 -0.34 0.63 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.09 1.91 3.99 -51.93 -0.21 1.70 16 42 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.08 1.60 5.86 -51.93 -0.30 1.29 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -30.12 311.71 -6.31 -36.43 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.96 Total: 10.29 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -0.17 Total: -22.87 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.34 Total: -35.78 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.30 Total: -9.77 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -3.92 Total: 17.00 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.12 -6.31 -36.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691020666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.578 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds