Wall clock time and date at job start Mon Mar 30 2020 06:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47410 * 2 1 4 4 H 1.09002 * 109.47110 * 310.33656 * 3 2 1 5 5 C 1.50696 * 109.47295 * 190.33487 * 3 2 1 6 6 H 1.07996 * 120.00194 * 245.34019 * 5 3 2 7 7 C 1.37885 * 120.00037 * 65.34078 * 5 3 2 8 8 N 1.31516 * 120.00023 * 202.68861 * 7 5 3 9 9 Si 1.86796 * 119.99739 * 22.68587 * 7 5 3 10 10 H 1.48502 * 109.47017 * 85.74299 * 9 7 5 11 11 H 1.48498 * 109.47045 * 205.73705 * 9 7 5 12 12 H 1.48496 * 109.47206 * 325.73947 * 9 7 5 13 13 N 1.46897 * 109.47273 * 70.33520 * 3 2 1 14 14 C 1.46899 * 111.00077 * 42.69090 * 13 3 2 15 15 C 1.46904 * 110.99943 * 278.73574 * 13 3 2 16 16 C 1.53003 * 109.47233 * 204.34487 * 15 13 3 17 17 H 1.08998 * 110.54916 * 307.88357 * 16 15 13 18 18 C 1.54988 * 110.61682 * 185.00126 * 16 15 13 19 19 C 1.54813 * 102.09173 * 204.31851 * 18 16 15 20 20 C 1.54097 * 104.30371 * 20.81350 * 19 18 16 21 21 C 1.53006 * 109.87879 * 121.51887 * 20 19 18 22 22 C 1.52992 * 109.88260 * 242.66989 * 20 19 18 23 23 O 1.44049 * 107.13655 * 2.13605 * 20 19 18 24 24 H 1.09002 * 109.46852 * 42.52516 * 1 2 3 25 25 H 1.09004 * 109.47417 * 162.52189 * 1 2 3 26 26 H 1.08996 * 109.47590 * 282.52541 * 1 2 3 27 27 H 1.09004 * 109.47032 * 239.99537 * 2 1 3 28 28 H 1.09004 * 109.46753 * 120.00137 * 2 1 3 29 29 H 0.96991 * 119.99928 * 180.02562 * 8 7 5 30 30 H 1.09008 * 109.47290 * 296.04773 * 14 13 3 31 31 H 1.09000 * 109.47092 * 56.04771 * 14 13 3 32 32 H 1.08998 * 109.47164 * 176.05024 * 14 13 3 33 33 H 1.09008 * 109.46899 * 84.34929 * 15 13 3 34 34 H 1.08997 * 109.47115 * 324.35243 * 15 13 3 35 35 H 1.08998 * 110.90716 * 86.12184 * 18 16 15 36 36 H 1.09005 * 110.93875 * 322.53045 * 18 16 15 37 37 H 1.09004 * 110.48561 * 139.55530 * 19 18 16 38 38 H 1.08996 * 110.48941 * 262.06857 * 19 18 16 39 39 H 1.09000 * 109.46823 * 59.99948 * 21 20 19 40 40 H 1.08997 * 109.47363 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.47135 * 300.00493 * 21 20 19 42 42 H 1.09001 * 109.46966 * 59.99829 * 22 20 19 43 43 H 1.09000 * 109.47804 * 180.02562 * 22 20 19 44 44 H 1.09006 * 109.47270 * 300.00610 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5340 2.0067 -0.7834 5 6 3.5252 1.4501 -0.2549 6 1 4.2032 1.7915 0.5133 7 6 4.0186 1.0212 -1.4689 8 7 5.2617 0.6020 -1.5625 9 14 2.9214 1.0354 -2.9806 10 1 2.9691 2.3776 -3.6142 11 1 3.3980 0.0143 -3.9478 12 1 1.5250 0.7257 -2.5816 13 7 1.7639 2.0595 1.3042 14 6 2.0670 1.1304 2.4009 15 6 0.3739 2.5288 1.3808 16 6 0.2708 3.6507 2.4160 17 1 0.7069 3.3374 3.3645 18 6 -1.2057 4.0805 2.6096 19 6 -1.0557 5.5310 3.1297 20 6 0.3570 5.9522 2.6809 21 6 0.2717 7.1948 1.7923 22 6 1.2267 6.2435 3.9053 23 8 0.9108 4.8518 1.9341 24 1 -0.3633 0.7574 -0.6946 25 1 -0.3634 -0.9802 -0.3087 26 1 -0.3634 0.2229 1.0031 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 5.6088 0.3007 -2.4165 30 1 1.4031 0.2679 2.3405 31 1 3.1021 0.7985 2.3203 32 1 1.9207 1.6353 3.3557 33 1 -0.2730 1.7023 1.6751 34 1 0.0629 2.9042 0.4059 35 1 -1.7002 3.4512 3.3495 36 1 -1.7446 4.0608 1.6623 37 1 -1.8081 6.1778 2.6784 38 1 -1.1342 5.5566 4.2165 39 1 -0.1862 8.0106 2.3516 40 1 1.2739 7.4866 1.4784 41 1 -0.3336 6.9722 0.9135 42 1 1.2975 5.3476 4.5222 43 1 2.2238 6.5411 3.5805 44 1 0.7784 7.0498 4.4859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691934448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:13 Heat of formation + Delta-G solvation = -42.894573 kcal Electronic energy + Delta-G solvation = -20618.723760 eV Core-core repulsion = 17764.219267 eV Total energy + Delta-G solvation = -2854.504493 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.72717 -37.68922 -33.46244 -32.39536 -31.83173 -31.05340 -28.35437 -27.32731 -27.20928 -24.94524 -22.94179 -21.96181 -20.52838 -19.84192 -19.08303 -16.68642 -16.35715 -15.57969 -15.06290 -14.72417 -14.22873 -14.10686 -13.82080 -13.49509 -13.25359 -12.75863 -12.50522 -12.25808 -12.08783 -12.03212 -11.91181 -11.68389 -11.49991 -11.40503 -11.11161 -11.04655 -10.90369 -10.71521 -10.61367 -10.52161 -10.44303 -10.02429 -9.74801 -9.50258 -9.32391 -9.18732 -8.19181 -7.12943 -6.04220 -3.89865 3.34990 3.43193 3.46885 4.01493 4.50782 4.62403 4.70016 4.87059 4.95565 5.21222 5.22354 5.26883 5.44444 5.53579 5.60246 5.62502 5.73406 5.76082 5.79626 5.87093 5.90948 5.95356 5.97374 6.04695 6.06621 6.12236 6.20859 6.26527 6.28663 6.35992 6.41987 6.58541 6.63277 6.78494 6.88961 7.02449 7.30415 7.40808 7.77725 8.06422 8.22958 8.76858 9.15168 9.66191 11.09099 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.006115 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.291263 B = 4577.924150 C = 4886.331904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.157 4.157 3 C 0.194 3.806 4 H 0.031 0.969 5 C -0.504 4.504 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.887 5.887 9 Si 0.856 3.144 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.261 1.261 13 N -0.515 5.515 14 C 0.031 3.969 15 C 0.054 3.946 16 C 0.088 3.912 17 H 0.064 0.936 18 C -0.153 4.153 19 C -0.145 4.145 20 C 0.090 3.910 21 C -0.141 4.141 22 C -0.160 4.160 23 O -0.340 6.340 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.262 0.738 30 H 0.019 0.981 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.995 7.397 9.466 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.197 4.197 3 C 0.086 3.914 4 H 0.048 0.952 5 C -0.541 4.541 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.525 5.525 9 Si 0.682 3.318 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.185 1.185 13 N -0.237 5.237 14 C -0.117 4.117 15 C -0.075 4.075 16 C 0.029 3.971 17 H 0.082 0.918 18 C -0.191 4.191 19 C -0.183 4.183 20 C 0.050 3.950 21 C -0.198 4.198 22 C -0.217 4.217 23 O -0.260 6.260 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.360 7.750 9.218 17.986 hybrid contribution -1.167 -0.748 -0.859 1.631 sum -14.526 7.001 8.360 18.164 Atomic orbital electron populations 1.22132 0.98683 1.00278 1.00394 1.22623 0.92715 1.02257 1.02067 1.19751 0.97326 0.88122 0.86163 0.95151 1.20835 0.89627 1.42834 1.00827 0.90326 1.24826 0.94762 0.94200 0.98688 1.70047 1.16290 1.40886 1.25234 0.87254 0.82467 0.77976 0.84075 1.20415 1.21677 1.18513 1.62079 1.18571 1.38949 1.04103 1.22375 1.02060 0.93916 0.93398 1.22390 0.91728 0.94788 0.98610 1.23151 0.89545 0.86938 0.97439 0.91812 1.23173 0.98216 0.95932 1.01798 1.23003 0.97193 0.96866 1.01189 1.22124 0.91747 0.89222 0.91860 1.21864 1.02777 0.95625 0.99549 1.22218 1.00737 1.01437 0.97339 1.89173 1.63335 1.13912 1.59533 0.93458 0.94214 0.93343 0.92355 0.91893 0.92832 0.96264 0.90584 0.93801 0.93467 0.91017 0.90772 0.90653 0.90849 0.91038 0.91948 0.91814 0.92084 0.92459 0.91754 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 8.63 37.16 0.32 -2.49 16 2 C -0.16 -3.41 4.30 -26.74 -0.12 -3.52 16 3 C 0.19 4.64 1.45 -68.87 -0.10 4.54 16 4 H 0.03 0.77 5.77 -51.93 -0.30 0.47 16 5 C -0.50 -14.35 8.55 -34.44 -0.29 -14.64 16 6 H 0.08 2.48 7.93 -52.49 -0.42 2.06 16 7 C 0.08 2.25 5.16 -17.82 -0.09 2.16 16 8 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 9 Si 0.86 21.57 26.01 -169.99 -4.42 17.15 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.26 -6.22 6.09 56.52 0.34 -5.87 16 13 N -0.51 -10.90 4.52 -236.28 -1.07 -11.97 16 14 C 0.03 0.59 8.20 60.06 0.49 1.08 16 15 C 0.05 0.94 3.59 -3.82 -0.01 0.92 16 16 C 0.09 1.36 3.40 -25.68 -0.09 1.27 16 17 H 0.06 0.99 7.05 -51.93 -0.37 0.62 16 18 C -0.15 -1.82 6.59 -24.73 -0.16 -1.98 16 19 C -0.14 -1.57 6.27 -25.20 -0.16 -1.72 16 20 C 0.09 1.19 1.20 -90.05 -0.11 1.08 16 21 C -0.14 -1.65 8.68 37.16 0.32 -1.33 16 22 C -0.16 -1.90 8.62 37.15 0.32 -1.58 16 23 O -0.34 -5.99 10.59 -35.23 -0.37 -6.36 16 24 H 0.05 0.84 7.86 -51.93 -0.41 0.44 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.78 5.16 -51.93 -0.27 0.51 16 27 H 0.06 1.36 5.80 -51.93 -0.30 1.06 16 28 H 0.06 1.34 5.76 -51.93 -0.30 1.04 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.02 0.34 5.61 -51.92 -0.29 0.05 16 31 H 0.08 1.61 7.52 -51.93 -0.39 1.22 16 32 H 0.04 0.73 7.07 -51.93 -0.37 0.36 16 33 H 0.05 0.75 5.29 -51.92 -0.27 0.47 16 34 H 0.07 1.33 7.48 -51.93 -0.39 0.94 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 37 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 38 H 0.07 0.68 7.70 -51.93 -0.40 0.28 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 325.20 15.07 4.90 4.90 Total: -1.00 -30.93 325.20 -7.73 -38.66 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.86 Total: 0.28 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 0.32 Total: -16.22 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: -0.30 Total: -38.40 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.37 Total: -6.36 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.42 Total: 17.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.93 -7.73 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691934448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.236 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds