Wall clock time and date at job start Mon Mar 30 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47410 * 2 1 4 4 H 1.09002 * 109.47110 * 310.33656 * 3 2 1 5 5 C 1.50696 * 109.47295 * 190.33487 * 3 2 1 6 6 H 1.07996 * 120.00194 * 245.34019 * 5 3 2 7 7 C 1.37885 * 120.00037 * 65.34078 * 5 3 2 8 8 N 1.31516 * 120.00023 * 202.68861 * 7 5 3 9 9 Si 1.86796 * 119.99739 * 22.68587 * 7 5 3 10 10 H 1.48502 * 109.47017 * 85.74299 * 9 7 5 11 11 H 1.48498 * 109.47045 * 205.73705 * 9 7 5 12 12 H 1.48496 * 109.47206 * 325.73947 * 9 7 5 13 13 N 1.46897 * 109.47273 * 70.33520 * 3 2 1 14 14 C 1.46899 * 111.00077 * 42.69090 * 13 3 2 15 15 C 1.46904 * 110.99943 * 278.73574 * 13 3 2 16 16 C 1.53003 * 109.47233 * 204.34487 * 15 13 3 17 17 H 1.08998 * 110.54916 * 307.88357 * 16 15 13 18 18 C 1.54988 * 110.61682 * 185.00126 * 16 15 13 19 19 C 1.54813 * 102.09173 * 204.31851 * 18 16 15 20 20 C 1.54097 * 104.30371 * 20.81350 * 19 18 16 21 21 C 1.53006 * 109.87879 * 121.51887 * 20 19 18 22 22 C 1.52992 * 109.88260 * 242.66989 * 20 19 18 23 23 O 1.44049 * 107.13655 * 2.13605 * 20 19 18 24 24 H 1.09002 * 109.46852 * 42.52516 * 1 2 3 25 25 H 1.09004 * 109.47417 * 162.52189 * 1 2 3 26 26 H 1.08996 * 109.47590 * 282.52541 * 1 2 3 27 27 H 1.09004 * 109.47032 * 239.99537 * 2 1 3 28 28 H 1.09004 * 109.46753 * 120.00137 * 2 1 3 29 29 H 0.96991 * 119.99928 * 180.02562 * 8 7 5 30 30 H 1.09008 * 109.47290 * 296.04773 * 14 13 3 31 31 H 1.09000 * 109.47092 * 56.04771 * 14 13 3 32 32 H 1.08998 * 109.47164 * 176.05024 * 14 13 3 33 33 H 1.09008 * 109.46899 * 84.34929 * 15 13 3 34 34 H 1.08997 * 109.47115 * 324.35243 * 15 13 3 35 35 H 1.08998 * 110.90716 * 86.12184 * 18 16 15 36 36 H 1.09005 * 110.93875 * 322.53045 * 18 16 15 37 37 H 1.09004 * 110.48561 * 139.55530 * 19 18 16 38 38 H 1.08996 * 110.48941 * 262.06857 * 19 18 16 39 39 H 1.09000 * 109.46823 * 59.99948 * 21 20 19 40 40 H 1.08997 * 109.47363 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.47135 * 300.00493 * 21 20 19 42 42 H 1.09001 * 109.46966 * 59.99829 * 22 20 19 43 43 H 1.09000 * 109.47804 * 180.02562 * 22 20 19 44 44 H 1.09006 * 109.47270 * 300.00610 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5340 2.0067 -0.7834 5 6 3.5252 1.4501 -0.2549 6 1 4.2032 1.7915 0.5133 7 6 4.0186 1.0212 -1.4689 8 7 5.2617 0.6020 -1.5625 9 14 2.9214 1.0354 -2.9806 10 1 2.9691 2.3776 -3.6142 11 1 3.3980 0.0143 -3.9478 12 1 1.5250 0.7257 -2.5816 13 7 1.7639 2.0595 1.3042 14 6 2.0670 1.1304 2.4009 15 6 0.3739 2.5288 1.3808 16 6 0.2708 3.6507 2.4160 17 1 0.7069 3.3374 3.3645 18 6 -1.2057 4.0805 2.6096 19 6 -1.0557 5.5310 3.1297 20 6 0.3570 5.9522 2.6809 21 6 0.2717 7.1948 1.7923 22 6 1.2267 6.2435 3.9053 23 8 0.9108 4.8518 1.9341 24 1 -0.3633 0.7574 -0.6946 25 1 -0.3634 -0.9802 -0.3087 26 1 -0.3634 0.2229 1.0031 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 5.6088 0.3007 -2.4165 30 1 1.4031 0.2679 2.3405 31 1 3.1021 0.7985 2.3203 32 1 1.9207 1.6353 3.3557 33 1 -0.2730 1.7023 1.6751 34 1 0.0629 2.9042 0.4059 35 1 -1.7002 3.4512 3.3495 36 1 -1.7446 4.0608 1.6623 37 1 -1.8081 6.1778 2.6784 38 1 -1.1342 5.5566 4.2165 39 1 -0.1862 8.0106 2.3516 40 1 1.2739 7.4866 1.4784 41 1 -0.3336 6.9722 0.9135 42 1 1.2975 5.3476 4.5222 43 1 2.2238 6.5411 3.5805 44 1 0.7784 7.0498 4.4859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691934448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:12 Heat of formation + Delta-G solvation = -64.080028 kcal Electronic energy + Delta-G solvation = -20619.642430 eV Core-core repulsion = 17764.219267 eV Total energy + Delta-G solvation = -2855.423163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84052 -39.29564 -34.99941 -34.05813 -33.13375 -32.45821 -29.93749 -28.80443 -28.24614 -26.42561 -24.61954 -23.23492 -21.75560 -20.98762 -20.74858 -18.77804 -17.57142 -17.11491 -16.28363 -16.19433 -15.82434 -15.59803 -15.12502 -14.67696 -14.60903 -14.27509 -13.82572 -13.69654 -13.50015 -13.45276 -13.06477 -12.91512 -12.85180 -12.74545 -12.55305 -12.44831 -12.38071 -12.27294 -12.13632 -11.72339 -11.59432 -11.47306 -11.40611 -11.32777 -11.16010 -10.44443 -10.38563 -8.73807 -8.29999 -6.19641 1.32184 1.37102 1.45237 2.36619 2.97178 3.02408 3.29716 3.72794 3.90611 3.98872 4.12304 4.22656 4.28429 4.34473 4.38642 4.41956 4.49475 4.57537 4.64673 4.70873 4.75738 4.76688 4.81146 4.87413 4.92847 4.96449 5.03290 5.04759 5.10624 5.15982 5.18514 5.22677 5.31271 5.32940 5.33645 5.45304 5.59519 5.70024 6.12386 6.32008 6.57300 6.80056 6.82562 7.40061 8.87474 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.006115 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.291263 B = 4577.924150 C = 4886.331904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.154 4.154 3 C 0.200 3.800 4 H 0.022 0.978 5 C -0.510 4.510 6 H 0.029 0.971 7 C 0.023 3.977 8 N -0.936 5.936 9 Si 0.922 3.078 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.236 1.236 13 N -0.540 5.540 14 C 0.038 3.962 15 C 0.057 3.943 16 C 0.084 3.916 17 H 0.061 0.939 18 C -0.145 4.145 19 C -0.137 4.137 20 C 0.076 3.924 21 C -0.140 4.140 22 C -0.157 4.157 23 O -0.385 6.385 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.264 0.736 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.800 7.757 10.203 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.092 3.908 4 H 0.040 0.960 5 C -0.548 4.548 6 H 0.047 0.953 7 C -0.176 4.176 8 N -0.575 5.575 9 Si 0.746 3.254 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.159 1.159 13 N -0.263 5.263 14 C -0.110 4.110 15 C -0.071 4.071 16 C 0.026 3.974 17 H 0.079 0.921 18 C -0.183 4.183 19 C -0.174 4.174 20 C 0.037 3.963 21 C -0.197 4.197 22 C -0.215 4.215 23 O -0.305 6.305 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.193 8.117 9.977 21.472 hybrid contribution 0.122 -0.798 -0.984 1.273 sum -17.071 7.319 8.993 20.637 Atomic orbital electron populations 1.22030 0.94993 1.01678 1.01884 1.22459 0.95938 0.99922 1.01067 1.19517 0.93883 0.89781 0.87614 0.96042 1.21096 0.91935 1.42058 0.99743 0.95302 1.25637 0.96234 0.93881 1.01808 1.70176 1.18586 1.42702 1.26086 0.86180 0.81682 0.77845 0.79693 1.20467 1.21160 1.15875 1.61929 1.21752 1.39433 1.03193 1.22286 1.00315 0.94561 0.93842 1.22438 0.89563 0.96143 0.98937 1.23183 0.92092 0.85963 0.96200 0.92121 1.23143 0.95467 0.96904 1.02753 1.22990 0.95700 0.96294 1.02445 1.22451 0.93328 0.88463 0.92046 1.21890 1.01936 0.96144 0.99705 1.22208 0.99874 1.02175 0.97206 1.89134 1.64806 1.15632 1.60967 0.93372 0.92074 0.91267 0.94371 0.92059 0.92682 0.94398 0.94091 0.91407 0.91095 0.92270 0.88334 0.90516 0.89139 0.89151 0.88969 0.93595 0.92569 0.92931 0.93707 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 8.63 71.98 0.62 -4.16 16 2 C -0.15 -6.51 4.30 30.59 0.13 -6.38 16 3 C 0.20 9.64 1.45 44.17 0.06 9.70 16 4 H 0.02 1.08 5.77 -2.39 -0.01 1.06 16 5 C -0.51 -30.38 8.55 25.60 0.22 -30.16 16 6 H 0.03 1.95 7.93 -2.91 -0.02 1.92 16 7 C 0.02 1.35 5.16 84.66 0.44 1.79 16 8 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 9 Si 0.92 45.20 26.01 68.60 1.78 46.98 16 10 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.24 -10.51 6.09 99.48 0.61 -9.91 16 13 N -0.54 -22.89 4.52 -901.46 -4.08 -26.97 16 14 C 0.04 1.44 8.20 127.69 1.05 2.48 16 15 C 0.06 1.90 3.59 86.30 0.31 2.21 16 16 C 0.08 2.44 3.40 31.28 0.11 2.54 16 17 H 0.06 1.77 7.05 -2.39 -0.02 1.76 16 18 C -0.14 -2.92 6.59 31.89 0.21 -2.71 16 19 C -0.14 -2.45 6.27 31.58 0.20 -2.26 16 20 C 0.08 1.87 1.20 -10.42 -0.01 1.86 16 21 C -0.14 -3.07 8.68 71.98 0.62 -2.45 16 22 C -0.16 -3.52 8.62 71.98 0.62 -2.90 16 23 O -0.39 -13.39 10.59 -148.98 -1.58 -14.97 16 24 H 0.05 1.55 7.86 -2.39 -0.02 1.53 16 25 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.07 1.92 5.16 -2.39 -0.01 1.91 16 27 H 0.04 1.74 5.80 -2.39 -0.01 1.72 16 28 H 0.06 2.57 5.76 -2.39 -0.01 2.55 16 29 H 0.26 15.79 8.31 -92.72 -0.77 15.02 16 30 H 0.04 1.27 5.61 -2.38 -0.01 1.26 16 31 H 0.04 1.80 7.52 -2.39 -0.02 1.78 16 32 H 0.07 2.20 7.07 -2.39 -0.02 2.18 16 33 H 0.07 1.99 5.29 -2.38 -0.01 1.98 16 34 H 0.06 2.11 7.48 -2.39 -0.02 2.09 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.54 8.06 -2.38 -0.02 1.52 16 37 H 0.09 1.34 7.70 -2.39 -0.02 1.32 16 38 H 0.09 1.30 7.70 -2.39 -0.02 1.28 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.05 1.20 8.11 -2.39 -0.02 1.18 16 43 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -70.92 325.20 1.85 -69.06 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.85 Total: 15.79 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 4.58 Total: -30.43 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -3.78 Total: -86.43 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.58 Total: -14.97 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.78 Total: 46.98 kcal Total: -70.92 1.85 -69.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691934448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.983 kcal (2) G-P(sol) polarization free energy of solvation -70.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds