Wall clock time and date at job start Mon Mar 30 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99455 * 2 1 4 4 C 1.53006 * 109.46906 * 68.12378 * 3 2 1 5 5 N 1.46499 * 109.47009 * 68.53821 * 4 3 2 6 6 C 1.36938 * 119.99901 * 83.16659 * 5 4 3 7 7 H 1.07999 * 120.00127 * 354.96951 * 6 5 4 8 8 C 1.38809 * 119.99893 * 174.97915 * 6 5 4 9 9 N 1.31625 * 120.00029 * 329.04971 * 8 6 5 10 10 Si 1.86804 * 120.00352 * 149.05223 * 8 6 5 11 11 H 1.48499 * 109.47196 * 94.99292 * 10 8 6 12 12 H 1.48501 * 109.47272 * 214.99427 * 10 8 6 13 13 H 1.48503 * 109.46709 * 334.99605 * 10 8 6 14 14 C 1.46493 * 119.99891 * 263.15833 * 5 4 3 15 15 C 1.52994 * 109.47283 * 351.68434 * 14 5 4 16 16 C 1.53003 * 109.47226 * 111.68154 * 14 5 4 17 17 C 1.53002 * 109.46978 * 188.12111 * 3 2 1 18 18 C 1.52995 * 109.47027 * 59.99843 * 17 3 2 19 19 C 1.53004 * 109.46908 * 60.00217 * 18 17 3 20 20 C 1.52992 * 109.47450 * 299.99864 * 19 18 17 21 21 C 1.52995 * 109.47552 * 308.12146 * 3 2 1 22 22 H 1.09001 * 109.47471 * 313.25576 * 1 2 3 23 23 H 1.08999 * 109.47571 * 73.26242 * 1 2 3 24 24 H 1.09010 * 109.46692 * 193.26312 * 1 2 3 25 25 H 1.08998 * 109.46962 * 308.53571 * 4 3 2 26 26 H 1.08996 * 109.46676 * 188.53981 * 4 3 2 27 27 H 0.96995 * 119.99974 * 180.02562 * 9 8 6 28 28 H 1.09002 * 109.47352 * 231.68540 * 14 5 4 29 29 H 1.09000 * 109.47705 * 74.44781 * 15 14 5 30 30 H 1.09003 * 109.47499 * 194.44375 * 15 14 5 31 31 H 1.08998 * 109.47249 * 314.44772 * 15 14 5 32 32 H 1.09002 * 109.46483 * 64.22097 * 16 14 5 33 33 H 1.08994 * 109.47485 * 184.22132 * 16 14 5 34 34 H 1.09001 * 109.46980 * 304.22884 * 16 14 5 35 35 H 1.09000 * 109.47055 * 180.02562 * 17 3 2 36 36 H 1.09006 * 109.46923 * 300.00172 * 17 3 2 37 37 H 1.08998 * 109.47660 * 299.99893 * 18 17 3 38 38 H 1.08998 * 109.47104 * 179.97438 * 18 17 3 39 39 H 1.08997 * 109.47126 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.46704 * 59.99949 * 19 18 17 41 41 H 1.08999 * 109.46994 * 300.00238 * 20 19 18 42 42 H 1.08992 * 109.47812 * 179.97438 * 20 19 18 43 43 H 1.09002 * 109.47307 * 59.99979 * 21 3 2 44 44 H 1.08999 * 109.47418 * 180.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7265 1.9900 1.3387 5 7 2.4746 1.3136 2.4012 6 6 3.7873 1.6335 2.6246 7 1 4.2942 2.3240 1.9670 8 6 4.4663 1.0700 3.6961 9 7 3.8153 0.7569 4.7965 10 14 6.3038 0.7560 3.5767 11 1 7.0412 1.9009 4.1689 12 1 6.6428 -0.4866 4.3158 13 1 6.6883 0.6042 2.1503 14 6 1.8185 0.2951 3.2248 15 6 0.3204 0.2761 2.9148 16 6 2.4208 -1.0769 2.9152 17 6 3.5222 1.1907 -0.2038 18 6 3.8058 0.5062 -1.5423 19 6 3.1997 1.3343 -2.6772 20 6 1.6878 1.4492 -2.4735 21 6 1.4041 2.1336 -1.1348 22 1 -0.3634 0.7042 0.7484 23 1 -0.3634 0.2959 -0.9841 24 1 -0.3633 -1.0004 0.2358 25 1 0.6595 1.9367 1.5551 26 1 2.0347 3.0341 1.2853 27 1 4.2899 0.3635 5.5454 28 1 1.9684 0.5283 4.2790 29 1 0.1553 -0.1999 1.9482 30 1 -0.2039 -0.2836 3.6895 31 1 -0.0577 1.2979 2.8859 32 1 3.4712 -1.0864 3.2061 33 1 1.8826 -1.8439 3.4719 34 1 2.3378 -1.2774 1.8470 35 1 3.9655 2.1865 -0.2033 36 1 3.9540 0.6007 0.6047 37 1 3.3626 -0.4896 -1.5424 38 1 4.8830 0.4248 -1.6877 39 1 3.4021 0.8469 -3.6308 40 1 3.6430 2.3300 -2.6771 41 1 1.2445 0.4534 -2.4734 42 1 1.2560 2.0394 -3.2816 43 1 0.3269 2.2155 -0.9896 44 1 1.8477 3.1293 -1.1350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692799275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:23 Heat of formation + Delta-G solvation = -17.641374 kcal Electronic energy + Delta-G solvation = -21981.179823 eV Core-core repulsion = 19127.770391 eV Total energy + Delta-G solvation = -2853.409432 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.61471 -36.23120 -35.24094 -31.62964 -31.55212 -30.35975 -28.63433 -27.10615 -25.76629 -24.79577 -22.94610 -22.10718 -20.53058 -19.24879 -18.61572 -16.74972 -15.74925 -15.13947 -14.89545 -14.71843 -14.38773 -13.87814 -13.53307 -13.15278 -13.03709 -12.55207 -12.28761 -12.02549 -11.73265 -11.63675 -11.59156 -11.08895 -11.01537 -10.86588 -10.78469 -10.66494 -10.57598 -10.40806 -10.21294 -10.11630 -9.83284 -9.59679 -9.47815 -9.31310 -9.14157 -8.76748 -8.25936 -6.66526 -5.56330 -2.93765 3.44748 3.54631 3.57876 4.44761 4.62049 5.09284 5.16614 5.19621 5.43098 5.52820 5.68307 5.68851 5.76185 5.81717 5.88655 5.95884 6.00320 6.03552 6.08763 6.21280 6.25837 6.29166 6.40211 6.41720 6.45375 6.52147 6.55894 6.69100 6.76999 6.86765 6.90222 6.96788 7.05643 7.22747 7.28841 7.38511 7.76304 7.96192 8.02403 8.10986 8.54357 9.34837 10.03651 10.47448 11.35065 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.009868 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.022717 B = 2836.662302 C = 3634.739348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.359 6.359 3 C 0.102 3.898 4 C 0.120 3.880 5 N -0.580 5.580 6 C -0.242 4.242 7 H 0.074 0.926 8 C 0.001 3.999 9 N -0.886 5.886 10 Si 0.875 3.125 11 H -0.293 1.293 12 H -0.291 1.291 13 H -0.280 1.280 14 C 0.170 3.830 15 C -0.182 4.182 16 C -0.142 4.142 17 C -0.097 4.097 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.145 4.145 22 H 0.052 0.948 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.250 0.750 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.016 0.984 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 0.240 -10.873 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.278 6.278 3 C 0.060 3.940 4 C -0.008 4.008 5 N -0.300 5.300 6 C -0.370 4.370 7 H 0.092 0.908 8 C -0.196 4.196 9 N -0.532 5.532 10 Si 0.705 3.295 11 H -0.221 1.221 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.065 3.935 15 C -0.239 4.239 16 C -0.202 4.202 17 C -0.134 4.134 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.184 4.184 22 H 0.071 0.929 23 H 0.046 0.954 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.973 0.014 -10.682 12.239 hybrid contribution 0.804 -0.035 -0.098 0.811 sum -5.169 -0.020 -10.780 11.956 Atomic orbital electron populations 1.22837 0.84009 1.01647 0.98990 1.87985 1.17286 1.27829 1.94659 1.22337 0.93884 0.83149 0.94582 1.21434 0.96182 0.94932 0.88238 1.44008 1.09732 1.41908 1.34398 1.19080 0.85785 1.23597 1.08553 0.90813 1.24457 0.96945 1.03009 0.95231 1.70003 1.34619 1.46283 1.02304 0.86656 0.87455 0.77702 0.77679 1.22079 1.21745 1.20600 1.20741 0.86584 0.87397 0.98805 1.22796 0.99798 0.99807 1.01487 1.22117 1.01514 0.97394 0.99126 1.21589 0.93289 1.01153 0.97365 1.21540 0.99210 0.99687 0.95164 1.21516 0.95634 0.99993 0.98185 1.21423 0.96407 1.00670 0.96396 1.22179 1.00426 0.99887 0.95895 0.92932 0.95423 0.91009 0.92822 0.93878 0.93970 0.87598 0.91651 0.94282 0.93801 0.92674 0.96459 0.93933 0.92138 0.87819 0.91766 0.93094 0.93111 0.92683 0.91845 0.93223 0.92471 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 7.48 101.05 0.76 1.08 16 2 O -0.36 -6.43 7.43 -35.23 -0.26 -6.69 16 3 C 0.10 1.80 0.50 -90.62 -0.05 1.75 16 4 C 0.12 2.38 4.48 -4.04 -0.02 2.36 16 5 N -0.58 -13.66 2.39 -165.67 -0.40 -14.06 16 6 C -0.24 -6.26 6.99 -15.06 -0.11 -6.37 16 7 H 0.07 1.89 7.02 -52.49 -0.37 1.53 16 8 C 0.00 0.03 3.65 -17.43 -0.06 -0.03 16 9 N -0.89 -24.90 9.92 55.49 0.55 -24.35 16 10 Si 0.88 21.54 29.65 -169.99 -5.04 16.50 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.17 3.98 2.84 -67.94 -0.19 3.79 16 15 C -0.18 -3.51 7.45 37.15 0.28 -3.24 16 16 C -0.14 -3.32 8.93 37.16 0.33 -2.99 16 17 C -0.10 -1.82 3.66 -26.73 -0.10 -1.92 16 18 C -0.12 -1.92 5.78 -26.73 -0.15 -2.07 16 19 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 20 C -0.11 -1.49 5.64 -26.73 -0.15 -1.64 16 21 C -0.15 -2.12 4.20 -26.73 -0.11 -2.23 16 22 H 0.05 0.78 4.48 -51.93 -0.23 0.55 16 23 H 0.03 0.36 6.44 -51.93 -0.33 0.03 16 24 H 0.07 0.99 7.91 -51.92 -0.41 0.58 16 25 H 0.05 1.01 3.68 -51.93 -0.19 0.82 16 26 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 27 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.11 2.89 5.60 -51.93 -0.29 2.60 16 29 H 0.06 1.16 3.25 -51.93 -0.17 1.00 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.82 6.39 -51.93 -0.33 0.49 16 32 H 0.05 1.43 6.15 -51.93 -0.32 1.11 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.04 0.97 6.87 -51.93 -0.36 0.61 16 35 H 0.06 1.13 7.75 -51.93 -0.40 0.73 16 36 H 0.10 2.35 5.98 -51.93 -0.31 2.04 16 37 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.89 6.93 -51.93 -0.36 0.53 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.78 6.77 -51.93 -0.35 0.43 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -27.32 304.53 -7.63 -34.95 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.34 Total: 2.33 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 0.27 Total: -13.26 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.16 Total: -38.41 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.26 Total: -6.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.04 Total: 16.50 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.32 -7.63 -34.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692799275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.308 kcal (2) G-P(sol) polarization free energy of solvation -27.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds