Wall clock time and date at job start Mon Mar 30 2020 07:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00424 * 2 1 4 4 C 1.53002 * 110.43787 * 298.06917 * 3 2 1 5 5 N 1.46895 * 109.46961 * 292.94783 * 4 3 2 6 6 C 1.46902 * 111.00600 * 77.54745 * 5 4 3 7 7 C 1.50699 * 109.47485 * 190.95621 * 6 5 4 8 8 H 1.07997 * 120.00105 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99754 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00488 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99677 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47272 * 90.00419 * 11 9 7 13 13 H 1.48503 * 109.46875 * 210.00021 * 11 9 7 14 14 H 1.48503 * 109.47224 * 330.00065 * 11 9 7 15 15 C 1.46900 * 111.00112 * 201.50423 * 5 4 3 16 16 C 1.53007 * 109.46764 * 310.83868 * 15 5 4 17 17 C 1.52999 * 109.47456 * 70.83566 * 15 5 4 18 18 C 1.54885 * 110.48856 * 175.52563 * 3 2 1 19 19 C 1.55234 * 102.59133 * 279.19077 * 18 3 2 20 20 C 1.54270 * 104.22856 * 322.08161 * 19 18 3 21 21 C 1.53869 * 106.59907 * 23.61247 * 20 19 18 22 22 H 1.08996 * 109.47466 * 63.92243 * 1 2 3 23 23 H 1.08994 * 109.47858 * 183.93091 * 1 2 3 24 24 H 1.09009 * 109.46921 * 303.93050 * 1 2 3 25 25 H 1.09004 * 109.46973 * 52.94353 * 4 3 2 26 26 H 1.09001 * 109.47697 * 172.94322 * 4 3 2 27 27 H 1.09000 * 109.46646 * 310.95696 * 6 5 4 28 28 H 1.09002 * 109.47093 * 70.95069 * 6 5 4 29 29 H 0.96998 * 120.00566 * 179.97438 * 10 9 7 30 30 H 1.09004 * 109.47468 * 190.84357 * 15 5 4 31 31 H 1.08996 * 109.47085 * 65.28805 * 16 15 5 32 32 H 1.08999 * 109.46771 * 185.28705 * 16 15 5 33 33 H 1.09000 * 109.47034 * 305.28235 * 16 15 5 34 34 H 1.08997 * 109.46820 * 64.78136 * 17 15 5 35 35 H 1.08997 * 109.47316 * 184.77929 * 17 15 5 36 36 H 1.08996 * 109.47176 * 304.78781 * 17 15 5 37 37 H 1.09005 * 110.75324 * 37.58159 * 18 3 2 38 38 H 1.09005 * 110.75907 * 160.94827 * 18 3 2 39 39 H 1.09001 * 110.47084 * 203.39845 * 19 18 3 40 40 H 1.08997 * 110.47229 * 80.76862 * 19 18 3 41 41 H 1.08999 * 110.03284 * 264.32268 * 20 19 18 42 42 H 1.09006 * 110.03250 * 142.89320 * 20 19 18 43 43 H 1.09004 * 110.03468 * 240.71680 * 21 20 19 44 44 H 1.08997 * 110.03733 * 119.28159 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6113 2.0679 -1.2651 5 7 2.2248 1.4279 -2.4364 6 6 1.4941 0.2109 -2.8146 7 6 2.2933 -0.5583 -3.8347 8 1 3.2482 -0.1807 -4.1690 9 6 1.8052 -1.7441 -4.3412 10 7 0.6425 -2.2043 -3.9337 11 14 2.7961 -2.6980 -5.6051 12 1 3.6962 -3.6531 -4.9103 13 1 1.8729 -3.4464 -6.4956 14 1 3.6069 -1.7529 -6.4143 15 6 2.3074 2.3645 -3.5651 16 6 0.9488 3.0380 -3.7693 17 6 3.3649 3.4295 -3.2679 18 6 3.5522 1.2122 0.1132 19 6 3.7674 0.9979 1.6355 20 6 2.6992 1.8916 2.2990 21 6 1.5820 2.0871 1.2592 22 1 -0.3634 0.4517 -0.9230 23 1 -0.3634 -1.0251 0.0704 24 1 -0.3633 0.5737 0.8527 25 1 0.5265 2.0546 -1.3704 26 1 1.9566 3.0991 -1.1919 27 1 1.3394 -0.4091 -1.9315 28 1 0.5286 0.4843 -3.2403 29 1 0.2990 -3.0383 -4.2903 30 1 2.5829 1.8210 -4.4689 31 1 0.7163 3.6572 -2.9029 32 1 0.9830 3.6614 -4.6628 33 1 0.1793 2.2752 -3.8878 34 1 4.3464 2.9595 -3.2064 35 1 3.3670 4.1721 -4.0657 36 1 3.1348 3.9154 -2.3198 37 1 3.9307 0.3633 -0.4563 38 1 4.0205 2.1396 -0.2166 39 1 4.7675 1.3178 1.9279 40 1 3.6077 -0.0475 1.8997 41 1 3.1326 2.8551 2.5671 42 1 2.3009 1.4008 3.1871 43 1 1.4732 3.1455 1.0225 44 1 0.6416 1.6912 1.6425 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692807498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:27 Heat of formation + Delta-G solvation = -49.532237 kcal Electronic energy + Delta-G solvation = -21214.625122 eV Core-core repulsion = 18359.832799 eV Total energy + Delta-G solvation = -2854.792324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.52200 -36.93411 -35.12510 -32.65759 -30.97585 -29.03115 -28.59247 -26.58616 -26.39233 -25.69059 -23.54830 -21.96517 -20.29887 -19.43735 -18.49518 -16.27975 -15.96156 -15.60142 -14.86691 -14.64933 -14.46321 -13.99045 -13.90727 -13.87203 -12.92552 -12.79770 -12.52357 -12.19311 -11.91996 -11.60481 -11.51373 -11.27061 -11.09118 -10.96524 -10.80749 -10.73555 -10.62609 -10.59699 -10.56343 -10.36064 -10.16068 -9.94101 -9.83194 -9.56118 -9.16478 -8.66832 -8.24140 -7.01185 -5.90021 -3.88092 3.38453 3.44269 3.47409 4.34488 4.51966 4.77204 4.95875 5.07724 5.24445 5.45875 5.55463 5.60150 5.62381 5.73957 5.78958 5.84840 5.92910 5.93786 6.00048 6.02470 6.06990 6.10076 6.14420 6.18410 6.25536 6.31642 6.32259 6.39016 6.45502 6.55629 6.56312 6.70022 6.84056 6.88325 6.96094 7.54144 7.61330 7.93832 7.95256 8.33244 8.43056 8.72888 9.19079 9.73743 11.20913 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.007738 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.160262 B = 3617.504679 C = 4151.033417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.121 3.879 4 C 0.035 3.965 5 N -0.519 5.519 6 C 0.176 3.824 7 C -0.498 4.498 8 H 0.059 0.941 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.891 3.109 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.077 3.923 16 C -0.178 4.178 17 C -0.138 4.138 18 C -0.087 4.087 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.154 4.154 22 H 0.045 0.955 23 H 0.081 0.919 24 H 0.030 0.970 25 H 0.027 0.973 26 H 0.066 0.934 27 H 0.068 0.932 28 H -0.017 1.017 29 H 0.258 0.742 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 10.049 8.918 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.081 3.919 4 C -0.094 4.094 5 N -0.242 5.242 6 C 0.052 3.948 7 C -0.537 4.537 8 H 0.077 0.923 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.720 3.280 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.201 1.201 15 C -0.032 4.032 16 C -0.237 4.237 17 C -0.196 4.196 18 C -0.124 4.124 19 C -0.164 4.164 20 C -0.154 4.154 21 C -0.192 4.192 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.001 0.999 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.149 9.587 9.012 13.332 hybrid contribution -0.787 -0.111 -0.998 1.276 sum 1.361 9.476 8.014 12.485 Atomic orbital electron populations 1.22708 0.82456 1.02238 0.99283 1.88051 1.18597 1.26381 1.94136 1.22284 0.94531 0.83326 0.91746 1.22574 0.96798 0.97303 0.92722 1.62297 1.53024 1.05950 1.02947 1.20162 0.91037 0.85922 0.97723 1.21182 1.04803 1.05520 1.22230 0.92307 1.24921 0.95089 0.97493 0.97052 1.69950 1.18554 1.21290 1.44117 0.86607 0.79865 0.80115 0.81421 1.20786 1.21555 1.20075 1.21641 0.92657 0.92664 0.96284 1.22440 1.00416 1.00591 1.00279 1.21841 0.99804 0.97956 0.99987 1.22276 0.92630 1.02975 0.94548 1.22465 0.97654 0.99900 0.96424 1.22030 0.96177 0.99402 0.97818 1.22818 0.99250 1.00445 0.96708 0.93693 0.90011 0.95131 0.95487 0.91563 0.91457 0.99940 0.93268 0.89066 0.93800 0.93454 0.92298 0.92410 0.93629 0.93621 0.89558 0.90858 0.92310 0.91495 0.92405 0.92445 0.91550 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.42 101.05 0.95 1.48 16 2 O -0.35 -7.03 8.28 -35.23 -0.29 -7.33 16 3 C 0.12 2.06 0.61 -88.96 -0.05 2.01 16 4 C 0.04 0.63 2.51 -3.83 -0.01 0.62 16 5 N -0.52 -10.87 3.83 -228.08 -0.87 -11.75 16 6 C 0.18 4.52 3.70 -4.98 -0.02 4.50 16 7 C -0.50 -14.07 8.31 -34.44 -0.29 -14.36 16 8 H 0.06 1.66 7.30 -52.49 -0.38 1.27 16 9 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 11 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.08 1.47 2.75 -67.71 -0.19 1.28 16 16 C -0.18 -3.13 8.38 37.16 0.31 -2.82 16 17 C -0.14 -2.16 9.31 37.16 0.35 -1.81 16 18 C -0.09 -1.42 5.60 -24.55 -0.14 -1.56 16 19 C -0.13 -1.74 6.82 -24.88 -0.17 -1.91 16 20 C -0.12 -1.45 6.80 -25.61 -0.17 -1.62 16 21 C -0.15 -2.12 5.93 -25.61 -0.15 -2.27 16 22 H 0.04 0.86 5.78 -51.93 -0.30 0.56 16 23 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.03 0.45 5.97 -51.92 -0.31 0.14 16 25 H 0.03 0.51 5.81 -51.93 -0.30 0.21 16 26 H 0.07 1.07 5.64 -51.93 -0.29 0.77 16 27 H 0.07 1.84 4.42 -51.93 -0.23 1.61 16 28 H -0.02 -0.48 6.56 -51.93 -0.34 -0.82 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.09 1.99 6.67 -51.93 -0.35 1.64 16 31 H 0.04 0.70 6.90 -51.93 -0.36 0.34 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.18 6.62 -51.93 -0.34 0.83 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.66 6.36 -51.93 -0.33 0.33 16 37 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.83 7.72 -51.93 -0.40 0.43 16 44 H 0.07 0.93 5.80 -51.93 -0.30 0.63 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -29.77 323.03 -7.85 -37.62 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.60 Total: 0.66 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 0.32 Total: -15.00 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.14 Total: -37.88 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.29 Total: -7.33 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.77 -7.85 -37.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692807498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.913 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds