Wall clock time and date at job start Mon Mar 30 2020 07:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 N 1.46904 * 109.46946 * 239.99657 * 2 1 3 14 14 C 1.46897 * 110.99939 * 85.00277 * 13 2 1 15 15 C 1.53000 * 109.46949 * 179.97438 * 14 13 2 16 16 O 1.42901 * 109.47642 * 300.00261 * 15 14 13 17 17 C 1.53004 * 109.47055 * 60.00409 * 15 14 13 18 18 C 1.53000 * 109.47055 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47067 * 299.99624 * 18 17 15 20 20 C 1.52999 * 109.47122 * 60.00030 * 19 18 17 21 21 H 1.09001 * 109.46923 * 60.00336 * 20 19 18 22 22 C 1.52998 * 109.47122 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.47067 * 180.02562 * 15 14 13 24 24 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 25 25 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 27 27 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 28 28 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 29 29 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99740 * 321.04954 * 13 2 1 31 31 H 1.08999 * 109.47553 * 300.00121 * 14 13 2 32 32 H 1.09005 * 109.47067 * 60.00344 * 14 13 2 33 33 H 0.96701 * 113.99573 * 59.99294 * 16 15 14 34 34 H 1.09003 * 109.46895 * 299.99982 * 17 15 14 35 35 H 1.09001 * 109.47239 * 59.99448 * 17 15 14 36 36 H 1.09005 * 109.46747 * 179.97438 * 18 17 15 37 37 H 1.08999 * 109.47301 * 60.00122 * 18 17 15 38 38 H 1.08999 * 109.47466 * 300.00396 * 19 18 17 39 39 H 1.08997 * 109.47543 * 180.02562 * 19 18 17 40 40 H 1.09005 * 109.47035 * 180.02562 * 22 20 19 41 41 H 1.09006 * 109.47061 * 299.99981 * 22 20 19 42 42 H 1.08999 * 109.47466 * 60.00366 * 22 20 19 43 43 H 1.08999 * 109.47466 * 300.00396 * 23 15 14 44 44 H 1.09000 * 109.47380 * 60.00215 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 5.5419 -1.1100 2.4076 9 14 3.3018 -2.1131 3.6927 10 1 3.1647 -3.5418 3.3115 11 1 4.0487 -2.0116 4.9722 12 1 1.9534 -1.5133 3.8578 13 7 2.0196 -0.6926 -1.1994 14 6 2.0824 0.2224 -2.3469 15 6 2.5962 -0.5331 -3.5741 16 8 3.9012 -1.0490 -3.3042 17 6 1.6471 -1.6895 -3.8953 18 6 2.1605 -2.4446 -5.1230 19 6 2.2254 -1.4913 -6.3178 20 6 3.1744 -0.3349 -5.9967 21 1 4.1700 -0.7284 -5.7912 22 6 3.2399 0.6181 -7.1918 23 6 2.6622 0.4200 -4.7691 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.7515 -1.7715 1.2057 28 1 1.6053 -0.2617 2.1370 29 1 6.0266 -1.5199 3.1411 30 1 1.4494 -1.4980 -1.4100 31 1 1.0871 0.6163 -2.5526 32 1 2.7589 1.0460 -2.1183 33 1 3.9350 -1.6618 -2.5569 34 1 1.6004 -2.3684 -3.0439 35 1 0.6516 -1.2960 -4.1012 36 1 1.4845 -3.2687 -5.3515 37 1 3.1560 -2.8381 -4.9175 38 1 1.2299 -1.0978 -6.5233 39 1 2.5907 -2.0293 -7.1926 40 1 3.9164 1.4416 -6.9631 41 1 3.6059 0.0797 -8.0662 42 1 2.2445 1.0116 -7.3977 43 1 1.6670 0.8139 -4.9752 44 1 3.3386 1.2436 -4.5401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695818163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:33 Heat of formation + Delta-G solvation = -83.773476 kcal Electronic energy + Delta-G solvation = -20211.680420 eV Core-core repulsion = 17355.403285 eV Total energy + Delta-G solvation = -2856.277135 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.66449 -36.73355 -35.10866 -32.67141 -32.10824 -31.28436 -29.18708 -27.72267 -26.43311 -24.60379 -22.55929 -22.08301 -20.23519 -19.71374 -19.59286 -16.55486 -16.13231 -15.57100 -15.38248 -14.59069 -14.29274 -14.19521 -13.99020 -13.77485 -13.22058 -12.84457 -12.62007 -12.44171 -12.25362 -12.18928 -11.87283 -11.83011 -11.70363 -11.61235 -11.21579 -11.08438 -10.82735 -10.74103 -10.57657 -10.35329 -10.15584 -10.02683 -9.69868 -9.58072 -9.26905 -8.99274 -8.39931 -7.67529 -5.87950 -3.82064 3.37504 3.45086 3.47264 4.47360 4.56543 4.58527 4.73206 4.84974 4.95048 5.11716 5.22135 5.36024 5.45512 5.46823 5.50016 5.58413 5.60651 5.64757 5.70534 5.74133 5.79805 5.83414 5.89623 5.95866 6.00783 6.04946 6.14453 6.25923 6.28613 6.33958 6.38817 6.44335 6.49847 6.58416 6.79729 7.17685 7.29708 7.77001 7.91215 8.05321 8.25027 8.75118 9.24143 9.74991 11.26013 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029095 B = 0.004952 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.142383 B = 5653.329785 C = 5959.339938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.099 3.901 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.489 4.489 6 H 0.077 0.923 7 C 0.061 3.939 8 N -0.908 5.908 9 Si 0.874 3.126 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.663 5.663 14 C 0.034 3.966 15 C 0.143 3.857 16 O -0.553 6.553 17 C -0.147 4.147 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.088 4.088 21 H 0.080 0.920 22 C -0.147 4.147 23 C -0.098 4.098 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.010 0.990 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.328 0.672 31 H 0.023 0.977 32 H 0.077 0.923 33 H 0.389 0.611 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 0.550 -16.368 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.010 4.010 3 H 0.088 0.912 4 C -0.041 4.041 5 C -0.527 4.527 6 H 0.096 0.904 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.702 3.298 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.294 5.294 14 C -0.096 4.096 15 C 0.101 3.899 16 O -0.361 6.361 17 C -0.185 4.185 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.107 4.107 21 H 0.099 0.901 22 C -0.205 4.205 23 C -0.136 4.136 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.029 0.971 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.041 0.959 32 H 0.095 0.905 33 H 0.239 0.761 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.879 0.958 -16.591 18.842 hybrid contribution -1.624 -0.788 1.147 2.139 sum -10.503 0.170 -15.444 18.678 Atomic orbital electron populations 1.22586 0.99489 1.01155 1.00923 1.21542 0.89643 0.98360 0.91467 0.91188 1.19608 0.97937 0.94996 0.91583 1.21040 0.89417 1.33646 1.08619 0.90441 1.25015 0.94649 0.96356 0.97831 1.69921 1.06359 1.46160 1.32401 0.86883 0.80309 0.80598 0.81972 1.20620 1.21734 1.19436 1.60463 1.57516 1.08734 1.02671 1.22660 0.98828 0.96671 0.91409 1.21028 0.83773 0.92228 0.92862 1.86374 1.27874 1.66388 1.55421 1.22240 0.99116 0.98480 0.98693 1.21425 1.01815 0.97438 0.94473 1.21579 0.99195 0.96461 0.97685 1.21033 1.00330 0.95248 0.94059 0.90132 1.21848 1.01372 0.99385 0.97851 1.21516 1.01202 0.97553 0.93307 0.94057 0.93119 0.92433 0.97148 0.96641 0.93119 0.85358 0.95896 0.90480 0.76116 0.91177 0.91955 0.92614 0.91131 0.92585 0.92406 0.92725 0.92960 0.93088 0.91461 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 9.16 37.16 0.34 -2.48 16 2 C 0.10 1.89 2.53 -67.71 -0.17 1.72 16 3 H 0.07 1.41 7.80 -51.93 -0.40 1.01 16 4 C 0.00 -0.08 3.72 -27.88 -0.10 -0.19 16 5 C -0.49 -13.81 9.39 -34.44 -0.32 -14.13 16 6 H 0.08 2.40 7.99 -52.49 -0.42 1.98 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 8 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 9 Si 0.87 21.97 27.46 -169.99 -4.67 17.30 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.50 6.55 56.52 0.37 -6.13 16 13 N -0.66 -11.55 5.36 -106.72 -0.57 -12.12 16 14 C 0.03 0.52 4.69 -3.83 -0.02 0.51 16 15 C 0.14 1.95 0.78 -90.62 -0.07 1.88 16 16 O -0.55 -9.07 11.63 -35.23 -0.41 -9.48 16 17 C -0.15 -1.76 4.59 -26.73 -0.12 -1.88 16 18 C -0.11 -1.26 5.78 -26.73 -0.15 -1.42 16 19 C -0.11 -1.14 5.20 -26.73 -0.14 -1.28 16 20 C -0.09 -0.99 2.57 -90.65 -0.23 -1.22 16 21 H 0.08 1.06 7.68 -51.93 -0.40 0.66 16 22 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 23 C -0.10 -1.19 4.22 -26.76 -0.11 -1.31 16 24 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 25 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 16 28 H 0.02 0.37 7.21 -51.93 -0.37 -0.01 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.33 5.19 6.51 -39.29 -0.26 4.94 16 31 H 0.02 0.32 7.44 -51.93 -0.39 -0.07 16 32 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 33 H 0.39 6.54 8.49 45.56 0.39 6.92 16 34 H 0.07 0.87 6.57 -51.93 -0.34 0.53 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -30.33 334.79 -8.30 -38.64 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.61 Total: 7.43 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -0.87 Total: -19.16 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.20 Total: -39.77 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.41 Total: -9.48 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.33 -8.30 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.135 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds