Wall clock time and date at job start Mon Mar 30 2020 07:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47299 * 2 1 4 4 C 1.52997 * 109.47020 * 240.00193 * 2 1 3 5 5 C 1.50695 * 109.47307 * 174.99910 * 4 2 1 6 6 H 1.07997 * 120.00077 * 0.02562 * 5 4 2 7 7 C 1.37885 * 120.00442 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00317 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99388 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46768 * 269.99267 * 9 7 5 11 11 H 1.48499 * 109.46910 * 149.99590 * 9 7 5 12 12 H 1.48493 * 109.47368 * 29.99572 * 9 7 5 13 13 N 1.46893 * 109.47190 * 120.00079 * 2 1 3 14 14 C 1.46899 * 111.00118 * 274.99872 * 13 2 1 15 15 C 1.53000 * 109.47405 * 179.97438 * 14 13 2 16 16 O 1.42902 * 109.47110 * 65.00006 * 15 14 13 17 17 C 1.53008 * 109.47234 * 305.00146 * 15 14 13 18 18 C 1.52997 * 109.47224 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47015 * 59.99672 * 18 17 15 20 20 C 1.52992 * 109.47662 * 300.00424 * 19 18 17 21 21 H 1.09000 * 109.47540 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.46955 * 299.99749 * 20 19 18 23 23 C 1.52994 * 109.47458 * 185.00094 * 15 14 13 24 24 H 1.08999 * 109.47028 * 59.99458 * 1 2 3 25 25 H 1.08991 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46627 * 300.00256 * 1 2 3 27 27 H 1.09000 * 109.47245 * 54.99429 * 4 2 1 28 28 H 1.09003 * 109.47003 * 295.00203 * 4 2 1 29 29 H 0.96999 * 120.00454 * 180.02562 * 8 7 5 30 30 H 1.00902 * 111.00135 * 151.04317 * 13 2 1 31 31 H 1.09001 * 109.47084 * 299.99969 * 14 13 2 32 32 H 1.09002 * 109.47130 * 60.00177 * 14 13 2 33 33 H 0.96706 * 114.00188 * 300.00405 * 16 15 14 34 34 H 1.08997 * 109.46860 * 299.99974 * 17 15 14 35 35 H 1.09002 * 109.46405 * 59.99718 * 17 15 14 36 36 H 1.08994 * 109.47073 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.47317 * 300.00668 * 18 17 15 38 38 H 1.09003 * 109.46989 * 60.00527 * 19 18 17 39 39 H 1.09000 * 109.47409 * 179.97438 * 19 18 17 40 40 H 1.09003 * 109.47205 * 48.76108 * 22 20 19 41 41 H 1.08998 * 109.47522 * 168.76407 * 22 20 19 42 42 H 1.09000 * 109.47245 * 288.76183 * 22 20 19 43 43 H 1.09008 * 109.47293 * 300.00035 * 23 15 14 44 44 H 1.09004 * 109.47418 * 59.99911 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0862 -0.5393 7 6 4.2305 -1.1935 -2.3579 8 7 5.5411 -1.1011 -2.4131 9 14 3.3014 -2.1086 -3.6955 10 1 3.1700 -3.5385 -3.3170 11 1 4.0452 -2.0019 -4.9763 12 1 1.9508 -1.5128 -3.8562 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3468 15 6 2.5951 -0.5332 3.5744 16 8 3.9434 -0.9496 3.3488 17 6 1.7165 -1.7613 3.8209 18 6 2.2294 -2.5174 5.0481 19 6 2.1777 -1.5995 6.2711 20 6 3.0562 -0.3714 6.0247 21 1 3.0197 0.2823 6.8961 22 6 4.4996 -0.8173 5.7825 23 6 2.5429 0.3849 4.7972 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.6053 -0.2617 -2.1370 28 1 1.7516 -1.7715 -1.2056 29 1 6.0255 -1.5078 -3.1485 30 1 2.9173 -1.1205 1.0286 31 1 2.7590 1.0462 2.1181 32 1 1.0871 0.6163 2.5525 33 1 4.0518 -1.5355 2.5871 34 1 0.6881 -1.4437 3.9930 35 1 1.7538 -2.4154 2.9497 36 1 1.6038 -3.3925 5.2234 37 1 3.2578 -2.8350 4.8756 38 1 1.1494 -1.2818 6.4437 39 1 2.5427 -2.1382 7.1455 40 1 4.5132 -1.6197 5.0449 41 1 5.0832 0.0259 5.4128 42 1 4.9309 -1.1756 6.7172 43 1 3.1689 1.2599 4.6216 44 1 1.5145 0.7026 4.9694 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695818165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:39 Heat of formation + Delta-G solvation = -80.510402 kcal Electronic energy + Delta-G solvation = -20488.568676 eV Core-core repulsion = 17632.433038 eV Total energy + Delta-G solvation = -2856.135638 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87904 -36.69362 -35.01043 -32.74975 -31.74832 -31.21864 -29.19572 -27.89369 -26.41350 -24.54092 -22.54028 -22.29075 -20.50025 -19.46871 -18.68442 -16.85626 -16.27338 -16.14718 -14.97148 -14.75438 -14.30210 -14.26897 -13.80138 -13.57122 -13.14999 -12.88369 -12.60670 -12.24941 -12.16705 -12.04754 -11.81888 -11.73132 -11.56199 -11.48143 -11.19192 -10.88665 -10.83622 -10.71500 -10.36147 -10.31640 -10.25776 -9.85257 -9.70469 -9.50093 -9.31966 -9.09818 -8.58487 -7.75574 -6.09256 -4.08298 3.28862 3.36677 3.40386 4.41644 4.45179 4.61629 4.83326 4.96105 5.00576 5.23286 5.27345 5.39295 5.50445 5.51149 5.55633 5.73679 5.75189 5.83551 5.88994 5.95188 6.03583 6.07354 6.09632 6.11884 6.16083 6.19786 6.26876 6.38939 6.41252 6.48363 6.52145 6.60081 6.68807 6.75139 6.88818 7.14742 7.24583 7.72712 7.82372 7.99858 8.15129 8.45331 8.92655 9.53250 11.03458 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.005370 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.598722 B = 5212.943351 C = 5644.890889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.097 3.903 3 H 0.034 0.966 4 C -0.017 4.017 5 C -0.525 4.525 6 H 0.070 0.930 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.680 5.680 14 C 0.033 3.967 15 C 0.140 3.860 16 O -0.550 6.550 17 C -0.132 4.132 18 C -0.120 4.120 19 C -0.113 4.113 20 C -0.085 4.085 21 H 0.059 0.941 22 C -0.147 4.147 23 C -0.100 4.100 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.263 0.737 30 H 0.353 0.647 31 H 0.032 0.968 32 H 0.067 0.933 33 H 0.374 0.626 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.065 0.935 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 -0.187 14.763 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.013 4.013 3 H 0.053 0.947 4 C -0.054 4.054 5 C -0.563 4.563 6 H 0.088 0.912 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.708 3.292 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.315 5.315 14 C -0.097 4.097 15 C 0.099 3.901 16 O -0.358 6.358 17 C -0.170 4.170 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.103 4.103 21 H 0.078 0.922 22 C -0.204 4.204 23 C -0.138 4.138 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.174 0.826 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.223 0.777 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.238 -0.114 15.336 17.409 hybrid contribution 0.252 -0.143 -1.540 1.567 sum -7.986 -0.257 13.796 15.942 Atomic orbital electron populations 1.21817 0.96648 1.01303 0.99739 1.21376 0.93162 0.96083 0.90637 0.94748 1.19768 0.97063 0.95891 0.92696 1.21071 0.89816 1.35413 1.09992 0.91229 1.25007 0.94658 0.95698 0.97810 1.69914 1.06569 1.45071 1.32265 0.86763 0.80390 0.80545 0.81468 1.20239 1.21535 1.19098 1.60624 1.34466 1.32057 1.04382 1.22615 1.00184 0.94921 0.92027 1.21131 0.82400 0.93381 0.93171 1.86655 1.26633 1.70165 1.52317 1.22030 0.98960 0.97521 0.98445 1.21566 1.01901 0.97589 0.94723 1.21558 0.99198 0.96461 0.97853 1.21005 0.96331 0.96211 0.96787 0.92234 1.22064 0.94470 1.03287 1.00571 1.21570 1.01008 0.97718 0.93479 0.93346 0.92676 0.94184 0.96161 0.96124 0.92707 0.82559 0.94951 0.91414 0.77727 0.91922 0.90119 0.92751 0.91051 0.92618 0.92575 0.89122 0.93122 0.94851 0.91617 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.42 37.16 0.35 -1.91 16 2 C 0.10 1.89 2.59 -67.72 -0.18 1.71 16 3 H 0.03 0.72 7.80 -51.93 -0.40 0.31 16 4 C -0.02 -0.38 3.64 -27.89 -0.10 -0.48 16 5 C -0.53 -14.22 8.67 -34.44 -0.30 -14.52 16 6 H 0.07 2.03 7.73 -52.49 -0.41 1.63 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 9 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 N -0.68 -11.97 5.33 -106.73 -0.57 -12.54 16 14 C 0.03 0.51 4.69 -3.82 -0.02 0.49 16 15 C 0.14 1.89 0.79 -90.62 -0.07 1.82 16 16 O -0.55 -8.17 8.76 -35.23 -0.31 -8.48 16 17 C -0.13 -1.67 4.70 -26.73 -0.13 -1.80 16 18 C -0.12 -1.38 5.59 -26.73 -0.15 -1.53 16 19 C -0.11 -1.20 5.45 -26.73 -0.15 -1.35 16 20 C -0.08 -0.97 3.20 -90.60 -0.29 -1.26 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 C -0.15 -1.84 7.81 37.16 0.29 -1.55 16 23 C -0.10 -1.23 4.59 -26.71 -0.12 -1.35 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.59 7.45 -51.93 -0.39 0.21 16 27 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 28 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.35 6.83 5.79 -39.29 -0.23 6.60 16 31 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 32 H 0.07 0.99 7.44 -51.93 -0.39 0.60 16 33 H 0.37 5.47 7.62 45.56 0.35 5.81 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.13 7.47 -51.93 -0.39 0.75 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.87 5.94 -51.93 -0.31 0.56 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.22 3.79 -51.93 -0.20 1.03 16 41 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 324.54 15.07 4.89 4.89 Total: -1.00 -28.32 324.54 -8.19 -36.52 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.36 Total: 9.01 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -0.96 Total: -19.85 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.20 Total: -38.81 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.31 Total: -8.48 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.32 -8.19 -36.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.992 kcal (2) G-P(sol) polarization free energy of solvation -28.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds