Wall clock time and date at job start Mon Mar 30 2020 07:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47357 * 2 1 4 4 C 1.53004 * 109.47035 * 120.00146 * 2 1 3 5 5 C 1.50699 * 109.47001 * 184.99952 * 4 2 1 6 6 H 1.08002 * 120.00148 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99568 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99388 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00335 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46952 * 90.00360 * 9 7 5 11 11 H 1.48497 * 109.47373 * 210.00340 * 9 7 5 12 12 H 1.48499 * 109.47068 * 330.00804 * 9 7 5 13 13 N 1.46908 * 109.46830 * 239.99577 * 2 1 3 14 14 C 1.46900 * 110.99574 * 95.99759 * 13 2 1 15 15 C 1.53000 * 109.46708 * 181.75353 * 14 13 2 16 16 O 1.42899 * 109.47220 * 54.54627 * 15 14 13 17 17 C 1.52996 * 109.47316 * 301.75390 * 14 13 2 18 18 C 1.53002 * 109.47355 * 180.02562 * 17 14 13 19 19 C 1.52998 * 109.46733 * 299.99697 * 18 17 14 20 20 C 1.53000 * 109.47293 * 59.99981 * 19 18 17 21 21 H 1.09003 * 109.47046 * 59.99613 * 20 19 18 22 22 C 1.52999 * 109.47578 * 179.97438 * 20 19 18 23 23 C 1.52999 * 109.47250 * 61.75729 * 14 13 2 24 24 H 1.09000 * 109.47142 * 53.33821 * 1 2 3 25 25 H 1.09002 * 109.47610 * 173.33492 * 1 2 3 26 26 H 1.08997 * 109.47235 * 293.33516 * 1 2 3 27 27 H 1.08996 * 109.46578 * 304.99640 * 4 2 1 28 28 H 1.09003 * 109.47012 * 64.99720 * 4 2 1 29 29 H 0.96998 * 119.99289 * 179.97438 * 8 7 5 30 30 H 1.00898 * 110.99929 * 219.94770 * 13 2 1 31 31 H 1.09006 * 109.46948 * 174.54445 * 15 14 13 32 32 H 1.09002 * 109.47356 * 294.54433 * 15 14 13 33 33 H 0.96707 * 113.99740 * 184.81846 * 16 15 14 34 34 H 1.09000 * 109.46916 * 299.99856 * 17 14 13 35 35 H 1.08999 * 109.47568 * 60.00023 * 17 14 13 36 36 H 1.08999 * 109.47194 * 59.99267 * 18 17 14 37 37 H 1.08997 * 109.47271 * 180.02562 * 18 17 14 38 38 H 1.09003 * 109.47170 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47458 * 300.00513 * 19 18 17 40 40 H 1.09006 * 109.46899 * 60.00385 * 22 20 19 41 41 H 1.09001 * 109.47647 * 180.02562 * 22 20 19 42 42 H 1.09001 * 109.47223 * 300.00356 * 22 20 19 43 43 H 1.09003 * 109.47039 * 299.99404 * 23 14 13 44 44 H 1.08993 * 109.47736 * 59.99294 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1937 2.3578 8 7 5.5410 -1.1004 2.4134 9 14 3.3014 -2.1088 3.6953 10 1 3.1699 -3.5387 3.3169 11 1 4.0452 -2.0022 4.9762 12 1 1.9507 -1.5131 3.8561 13 7 2.0196 -0.6926 -1.1995 14 6 2.3301 0.2643 -2.2699 15 6 2.7943 -0.4955 -3.5142 16 8 1.8096 -1.4663 -3.8745 17 6 1.0785 1.0773 -2.6062 18 6 1.4017 2.0735 -3.7215 19 6 2.5129 3.0169 -3.2564 20 6 3.7646 2.2039 -2.9201 21 1 4.0951 1.6623 -3.8065 22 6 4.8760 3.1472 -2.4556 23 6 3.4412 1.2075 -1.8044 24 1 -0.3633 0.6136 -0.8244 25 1 -0.3634 -1.0207 -0.1193 26 1 -0.3633 0.4071 0.9436 27 1 1.6054 -0.2617 2.1369 28 1 1.7515 -1.7716 1.2056 29 1 6.0253 -1.5072 3.1489 30 1 2.8210 -1.2665 -0.9838 31 1 2.9318 0.2054 -4.3376 32 1 3.7386 -0.9971 -3.3025 33 1 2.0699 -2.0359 -4.6114 34 1 0.2870 0.4053 -2.9379 35 1 0.7477 1.6186 -1.7197 36 1 1.7322 1.5320 -4.6078 37 1 0.5101 2.6531 -3.9607 38 1 2.7435 3.7263 -4.0511 39 1 2.1825 3.5583 -2.3700 40 1 4.5458 3.6890 -1.5693 41 1 5.7679 2.5681 -2.2164 42 1 5.1062 3.8567 -3.2504 43 1 3.1105 1.7488 -0.9179 44 1 4.3329 0.6284 -1.5648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695818358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:54 Heat of formation + Delta-G solvation = -74.250144 kcal Electronic energy + Delta-G solvation = -21020.385434 eV Core-core repulsion = 18164.521261 eV Total energy + Delta-G solvation = -2855.864173 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88839 -35.96328 -35.86073 -32.81876 -31.94028 -31.28110 -27.99201 -27.50851 -26.09079 -25.53932 -22.74875 -21.75641 -20.40520 -19.58831 -18.08947 -17.00717 -16.71231 -15.59830 -14.96658 -14.65097 -14.29054 -14.18858 -13.98995 -13.54964 -13.09763 -12.85811 -12.43756 -12.27526 -11.96898 -11.77049 -11.67737 -11.59509 -11.51656 -11.44838 -11.26426 -10.86980 -10.70260 -10.51977 -10.43862 -10.05326 -10.01546 -9.76829 -9.52962 -9.44731 -9.30505 -9.13201 -8.53818 -7.45222 -6.05535 -4.03203 3.32213 3.39510 3.44360 4.45934 4.52171 4.78654 4.88378 5.01807 5.15355 5.30426 5.35122 5.40861 5.50602 5.62542 5.66080 5.76500 5.84217 5.90994 5.91643 5.97680 6.00065 6.05560 6.17348 6.21953 6.23128 6.29277 6.40667 6.46321 6.47840 6.60978 6.62197 6.71738 6.79375 6.86777 6.98591 7.26224 7.34470 7.79380 7.93881 8.08614 8.37527 8.51703 8.98172 9.58254 11.07172 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.007043 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.363083 B = 3974.395312 C = 4445.655290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.092 3.908 3 H 0.045 0.955 4 C -0.022 4.022 5 C -0.522 4.522 6 H 0.074 0.926 7 C 0.069 3.931 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.662 5.662 14 C 0.125 3.875 15 C 0.087 3.913 16 O -0.552 6.552 17 C -0.103 4.103 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.090 4.090 21 H 0.065 0.935 22 C -0.147 4.147 23 C -0.141 4.141 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.262 0.738 30 H 0.354 0.646 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.365 0.635 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 5.634 -12.878 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 H 0.063 0.937 4 C -0.060 4.060 5 C -0.560 4.560 6 H 0.092 0.908 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.294 5.294 14 C 0.033 3.967 15 C 0.009 3.991 16 O -0.355 6.355 17 C -0.141 4.141 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.110 4.110 21 H 0.083 0.917 22 C -0.204 4.204 23 C -0.180 4.180 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.175 0.825 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.209 0.791 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.507 5.710 -12.484 15.191 hybrid contribution 0.971 -0.371 0.760 1.287 sum -5.536 5.339 -11.723 14.021 Atomic orbital electron populations 1.22052 0.96939 1.01456 0.99723 1.21448 0.93155 0.96820 0.90362 0.93674 1.19863 0.97054 0.95903 0.93134 1.21169 0.89874 1.35056 1.09862 0.90766 1.25006 0.94657 0.95767 0.97837 1.69918 1.06534 1.45401 1.32307 0.86782 0.80443 0.80595 0.81476 1.20333 1.21629 1.19089 1.60710 1.39650 1.21509 1.07531 1.20808 0.93704 0.90917 0.91277 1.22330 0.90506 0.90258 0.96009 1.86638 1.43848 1.49776 1.55246 1.21665 0.97619 0.96792 0.98006 1.21619 0.98033 0.97414 0.98778 1.21611 0.95196 0.97586 1.00720 1.21166 0.94969 0.96334 0.98484 0.91700 1.21825 0.98582 0.99170 1.00824 1.22393 0.99392 0.97789 0.98418 0.93321 0.92819 0.93870 0.96312 0.96353 0.92842 0.82475 0.93578 0.94264 0.79092 0.90985 0.91612 0.92142 0.92465 0.92637 0.92090 0.92670 0.92551 0.93314 0.90492 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.09 37.16 0.34 -2.22 16 2 C 0.09 1.85 1.82 -67.71 -0.12 1.73 16 3 H 0.05 0.94 5.13 -51.93 -0.27 0.67 16 4 C -0.02 -0.52 3.55 -27.88 -0.10 -0.62 16 5 C -0.52 -14.24 8.67 -34.44 -0.30 -14.54 16 6 H 0.07 2.13 6.89 -52.49 -0.36 1.77 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 9 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 N -0.66 -12.77 5.72 -93.04 -0.53 -13.31 16 14 C 0.12 2.02 0.47 -131.60 -0.06 1.96 16 15 C 0.09 1.26 5.35 37.16 0.20 1.46 16 16 O -0.55 -8.03 12.97 -35.23 -0.46 -8.48 16 17 C -0.10 -1.53 3.36 -26.73 -0.09 -1.62 16 18 C -0.12 -1.48 5.65 -26.73 -0.15 -1.63 16 19 C -0.11 -1.38 5.20 -26.73 -0.14 -1.51 16 20 C -0.09 -1.21 2.45 -90.60 -0.22 -1.43 16 21 H 0.06 0.82 6.55 -51.93 -0.34 0.48 16 22 C -0.15 -1.89 9.19 37.16 0.34 -1.55 16 23 C -0.14 -2.32 3.40 -26.71 -0.09 -2.41 16 24 H 0.05 0.79 5.39 -51.93 -0.28 0.51 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 28 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.35 7.66 7.30 -39.29 -0.29 7.37 16 31 H 0.05 0.58 4.83 -51.93 -0.25 0.33 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.36 3.56 9.12 45.56 0.42 3.98 16 34 H 0.07 1.16 7.74 -51.93 -0.40 0.75 16 35 H 0.07 1.03 5.46 -51.93 -0.28 0.74 16 36 H 0.06 0.72 6.31 -51.93 -0.33 0.39 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.42 6.08 -51.93 -0.32 1.11 16 44 H 0.07 1.31 7.65 -51.93 -0.40 0.91 16 LS Contribution 319.35 15.07 4.81 4.81 Total: -1.00 -29.91 319.35 -7.40 -37.31 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.84 Total: 9.53 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -0.49 Total: -20.54 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.24 Total: -39.82 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.46 Total: -8.48 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.91 -7.40 -37.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.937 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds