Wall clock time and date at job start Mon Mar 30 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 H 1.08998 * 109.50504 * 297.17583 * 3 2 1 5 5 C 1.53101 * 109.54158 * 57.28487 * 3 2 1 6 6 O 1.43010 * 109.25488 * 176.80322 * 5 3 2 7 7 C 1.43016 * 113.74372 * 301.32850 * 6 5 3 8 8 C 1.52993 * 109.50935 * 178.60589 * 7 6 5 9 9 C 1.52993 * 109.50447 * 298.69614 * 7 6 5 10 10 C 1.53106 * 109.25477 * 58.67191 * 7 6 5 11 11 N 1.47009 * 109.25575 * 303.15229 * 10 7 6 12 12 C 1.46902 * 111.00013 * 182.39267 * 11 10 7 13 13 H 1.08993 * 109.47497 * 196.86569 * 12 11 10 14 14 C 1.53006 * 109.46853 * 76.86354 * 12 11 10 15 15 C 1.53003 * 109.46963 * 316.86831 * 12 11 10 16 16 C 1.50695 * 109.47037 * 289.76275 * 15 12 11 17 17 H 1.08001 * 120.00074 * 352.83905 * 16 15 12 18 18 C 1.37879 * 120.00127 * 172.83604 * 16 15 12 19 19 N 1.31513 * 120.00155 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00131 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47237 * 270.00002 * 20 18 16 22 22 H 1.48501 * 109.47672 * 149.99470 * 20 18 16 23 23 H 1.48507 * 109.47136 * 29.99307 * 20 18 16 24 24 H 1.08997 * 109.46944 * 304.31053 * 1 2 3 25 25 H 1.08997 * 109.47421 * 64.31573 * 1 2 3 26 26 H 1.09010 * 109.46942 * 184.31506 * 1 2 3 27 27 H 1.09003 * 109.46835 * 240.00352 * 2 1 3 28 28 H 1.08993 * 109.47378 * 120.00369 * 2 1 3 29 29 H 1.09003 * 109.50370 * 296.74130 * 5 3 2 30 30 H 1.09000 * 109.50318 * 56.86835 * 5 3 2 31 31 H 1.09009 * 109.47123 * 60.00044 * 8 7 6 32 32 H 1.08995 * 109.47451 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47507 * 300.00347 * 8 7 6 34 34 H 1.09005 * 109.47453 * 59.99734 * 9 7 6 35 35 H 1.09002 * 109.47220 * 179.97438 * 9 7 6 36 36 H 1.09003 * 109.47319 * 299.99578 * 9 7 6 37 37 H 1.08996 * 109.50481 * 183.21940 * 10 7 6 38 38 H 1.08996 * 109.50608 * 63.08749 * 10 7 6 39 39 H 1.09000 * 109.46974 * 174.98507 * 14 12 11 40 40 H 1.08996 * 109.47243 * 294.98536 * 14 12 11 41 41 H 1.08990 * 109.47007 * 54.98314 * 14 12 11 42 42 H 1.08998 * 109.47382 * 169.76224 * 15 12 11 43 43 H 1.08996 * 109.47268 * 49.76085 * 15 12 11 44 44 H 0.96998 * 120.00162 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7189 1.9420 -0.9140 5 6 1.4755 2.1852 1.2139 6 8 2.0145 3.5094 1.2492 7 6 3.4425 3.5482 1.3186 8 6 3.9148 5.0034 1.3164 9 6 3.9104 2.8611 2.6030 10 6 4.0269 2.8192 0.1056 11 7 3.5084 1.4440 0.0704 12 6 4.0899 0.6907 -1.0488 13 1 3.4892 -0.1985 -1.2393 14 6 5.5193 0.2747 -0.6955 15 6 4.1094 1.5707 -2.3003 16 6 2.7001 1.7733 -2.7940 17 1 1.8854 1.2287 -2.3400 18 6 2.4507 2.6538 -3.8252 19 7 1.2209 2.8302 -4.2564 20 14 3.8598 3.5952 -4.6109 21 1 4.0582 4.8799 -3.8929 22 1 3.5397 3.8684 -6.0351 23 1 5.1023 2.7858 -4.5294 24 1 -0.3633 0.5793 0.8488 25 1 -0.3634 0.4454 -0.9261 26 1 -0.3633 -1.0249 0.0773 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.3894 2.2362 1.1367 30 1 1.7517 1.6554 2.1255 31 1 3.4952 5.5229 2.1780 32 1 5.0031 5.0323 1.3688 33 1 3.5824 5.4920 0.4004 34 1 3.5749 1.8240 2.6032 35 1 4.9987 2.8906 2.6551 36 1 3.4909 3.3789 3.4656 37 1 5.1138 2.7966 0.1836 38 1 3.7375 3.3408 -0.8066 39 1 5.9193 -0.3590 -1.4870 40 1 6.1415 1.1636 -0.5924 41 1 5.5152 -0.2769 0.2445 42 1 4.7001 1.0849 -3.0769 43 1 4.5519 2.5370 -2.0582 44 1 1.0454 3.4499 -4.9817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695818557.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:56 Heat of formation + Delta-G solvation = -63.564338 kcal Electronic energy + Delta-G solvation = -21631.579978 eV Core-core repulsion = 18776.179177 eV Total energy + Delta-G solvation = -2855.400801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37176 -38.17438 -35.79751 -34.67934 -33.61699 -31.73505 -29.87614 -28.59669 -27.87625 -26.77908 -24.82222 -24.14314 -21.89645 -20.87838 -20.03869 -18.70757 -17.69115 -16.88601 -16.42258 -16.12085 -15.88849 -15.36624 -15.28494 -14.85464 -14.66687 -14.12660 -13.95524 -13.68773 -13.47431 -13.42511 -13.19585 -13.01507 -12.84943 -12.74585 -12.61411 -12.51007 -12.27168 -12.04250 -11.97032 -11.85317 -11.68052 -11.50629 -11.22340 -11.05150 -10.87899 -10.69779 -10.24661 -8.93245 -8.24862 -6.24058 1.27050 1.29575 1.39362 2.33082 2.89931 3.02628 3.17168 3.90862 4.00527 4.05616 4.15892 4.24068 4.32783 4.41601 4.49908 4.58561 4.62823 4.70245 4.73167 4.76770 4.81134 4.85559 4.87643 4.98085 5.00009 5.04531 5.12599 5.16351 5.17274 5.20975 5.26660 5.29053 5.39080 5.41939 5.52149 5.52918 5.66020 5.70075 6.28643 6.34679 6.36982 6.45323 6.80955 7.36621 8.88653 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.009753 C = 0.008671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.438222 B = 2870.118844 C = 3228.340945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C 0.029 3.971 4 H 0.053 0.947 5 C 0.073 3.927 6 O -0.402 6.402 7 C 0.105 3.895 8 C -0.135 4.135 9 C -0.153 4.153 10 C 0.030 3.970 11 N -0.500 5.500 12 C 0.080 3.920 13 H 0.071 0.929 14 C -0.128 4.128 15 C -0.042 4.042 16 C -0.510 4.510 17 H 0.062 0.938 18 C 0.010 3.990 19 N -0.946 5.946 20 Si 0.930 3.070 21 H -0.275 1.275 22 H -0.289 1.289 23 H -0.252 1.252 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.019 0.981 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.010 0.990 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.443 -2.192 13.633 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C -0.080 4.080 4 H 0.071 0.929 5 C -0.004 4.004 6 O -0.322 6.322 7 C 0.066 3.934 8 C -0.193 4.193 9 C -0.210 4.210 10 C -0.098 4.098 11 N -0.223 5.223 12 C -0.028 4.028 13 H 0.089 0.911 14 C -0.185 4.185 15 C -0.080 4.080 16 C -0.548 4.548 17 H 0.080 0.920 18 C -0.187 4.187 19 N -0.587 5.587 20 Si 0.755 3.245 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.175 1.175 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.029 0.971 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.388 -2.178 13.945 15.493 hybrid contribution -0.079 0.873 -2.075 2.253 sum 6.309 -1.306 11.870 13.506 Atomic orbital electron populations 1.21763 0.95224 1.02290 1.01146 1.21406 0.95953 0.94927 1.01732 1.22614 0.88871 0.97450 0.99047 0.92909 1.22771 0.97871 0.82797 0.96913 1.87954 1.21291 1.28176 1.94754 1.21769 0.80355 0.96487 0.94764 1.21759 1.02178 0.93152 1.02197 1.22142 1.02216 1.01211 0.95431 1.22754 1.00099 0.90030 0.96959 1.62725 1.05326 1.12446 1.41832 1.21719 0.96360 0.96222 0.88510 0.91088 1.21712 0.94240 1.00902 1.01689 1.20272 0.95619 0.96408 0.95700 1.21580 0.93753 1.23306 1.16131 0.92017 1.25794 0.97249 0.98079 0.97537 1.70039 1.21239 1.38227 1.29215 0.85958 0.81318 0.79580 0.77621 1.20120 1.21475 1.17547 0.91360 0.95284 0.91019 0.93309 0.90243 0.89049 0.91186 0.90698 0.89008 0.94148 0.91700 0.90484 0.91903 0.89442 0.96281 0.92289 0.93128 0.91133 0.97129 0.96252 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.62 71.98 0.69 -3.81 16 2 C -0.10 -3.44 4.84 30.59 0.15 -3.29 16 3 C 0.03 1.11 1.52 44.93 0.07 1.18 16 4 H 0.05 2.68 4.68 -2.39 -0.01 2.67 16 5 C 0.07 2.47 5.37 72.02 0.39 2.86 16 6 O -0.40 -14.96 10.28 -148.98 -1.53 -16.49 16 7 C 0.11 3.33 1.11 -10.76 -0.01 3.31 16 8 C -0.14 -3.70 8.85 71.98 0.64 -3.07 16 9 C -0.15 -3.78 8.17 71.98 0.59 -3.20 16 10 C 0.03 1.09 3.22 86.32 0.28 1.37 16 11 N -0.50 -17.94 3.78 -844.92 -3.20 -21.14 16 12 C 0.08 3.03 2.35 44.92 0.11 3.14 16 13 H 0.07 2.82 5.42 -2.39 -0.01 2.81 16 14 C -0.13 -3.79 9.22 71.98 0.66 -3.13 16 15 C -0.04 -1.92 3.04 29.85 0.09 -1.83 16 16 C -0.51 -28.24 7.56 25.60 0.19 -28.04 16 17 H 0.06 3.67 5.28 -2.91 -0.02 3.66 16 18 C 0.01 0.59 5.47 84.66 0.46 1.05 16 19 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 20 Si 0.93 45.44 27.33 68.60 1.88 47.32 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 23 H -0.25 -11.53 6.75 99.48 0.67 -10.86 16 24 H 0.07 1.84 6.22 -2.39 -0.01 1.82 16 25 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.05 1.84 5.83 -2.39 -0.01 1.82 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.09 2.98 6.48 -2.39 -0.02 2.97 16 30 H 0.07 2.04 6.49 -2.39 -0.02 2.03 16 31 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.70 6.13 -2.38 -0.01 1.69 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 2.79 6.98 -2.39 -0.02 2.78 16 38 H 0.02 0.86 6.00 -2.39 -0.01 0.85 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.05 1.44 7.13 -2.39 -0.02 1.43 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.01 0.49 7.66 -2.39 -0.02 0.47 16 43 H 0.02 0.90 4.76 -2.39 -0.01 0.89 16 44 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -64.92 315.44 2.68 -62.24 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.93 Total: 20.59 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 4.30 Total: -33.46 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -2.90 Total: -80.19 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -1.53 Total: -16.49 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Total: -64.92 2.68 -62.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818557.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.325 kcal (2) G-P(sol) polarization free energy of solvation -64.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds