Wall clock time and date at job start Mon Mar 30 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47204 * 2 1 4 4 H 1.08999 * 109.54623 * 55.91981 * 3 2 1 5 5 C 1.53098 * 109.50821 * 295.81286 * 3 2 1 6 6 O 1.43013 * 109.25965 * 183.21656 * 5 3 2 7 7 C 1.43016 * 113.73907 * 58.67025 * 6 5 3 8 8 C 1.53003 * 109.50780 * 181.39327 * 7 6 5 9 9 C 1.52996 * 109.50866 * 61.26588 * 7 6 5 10 10 C 1.53100 * 109.25882 * 301.32735 * 7 6 5 11 11 N 1.47014 * 109.25339 * 56.84940 * 10 7 6 12 12 C 1.46899 * 110.99864 * 177.60652 * 11 10 7 13 13 H 1.08999 * 109.47173 * 180.25723 * 12 11 10 14 14 C 1.53009 * 109.47022 * 60.25852 * 12 11 10 15 15 C 1.53005 * 109.47226 * 300.25643 * 12 11 10 16 16 C 1.50693 * 109.47246 * 296.90636 * 15 12 11 17 17 H 1.08003 * 119.99962 * 354.99983 * 16 15 12 18 18 C 1.37871 * 120.00160 * 174.99737 * 16 15 12 19 19 N 1.31515 * 119.99738 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00262 * 180.27499 * 18 16 15 21 21 H 1.48497 * 109.47054 * 179.72551 * 20 18 16 22 22 H 1.48503 * 109.46941 * 299.72558 * 20 18 16 23 23 H 1.48501 * 109.47109 * 59.72556 * 20 18 16 24 24 H 1.08989 * 109.47581 * 65.68634 * 1 2 3 25 25 H 1.08998 * 109.47004 * 185.69403 * 1 2 3 26 26 H 1.09003 * 109.46489 * 305.68642 * 1 2 3 27 27 H 1.09008 * 109.46738 * 240.00254 * 2 1 3 28 28 H 1.08996 * 109.47411 * 120.00421 * 2 1 3 29 29 H 1.09002 * 109.51019 * 63.27892 * 5 3 2 30 30 H 1.08997 * 109.54225 * 303.17136 * 5 3 2 31 31 H 1.08999 * 109.47310 * 179.77978 * 8 7 6 32 32 H 1.08997 * 109.47342 * 299.78466 * 8 7 6 33 33 H 1.09005 * 109.46567 * 59.78047 * 8 7 6 34 34 H 1.09005 * 109.47153 * 300.21778 * 9 7 6 35 35 H 1.09005 * 109.47312 * 60.21693 * 9 7 6 36 36 H 1.09000 * 109.47088 * 180.21857 * 9 7 6 37 37 H 1.09000 * 109.50394 * 296.91822 * 10 7 6 38 38 H 1.08995 * 109.50772 * 176.78026 * 10 7 6 39 39 H 1.09005 * 109.46960 * 176.73352 * 14 12 11 40 40 H 1.09005 * 109.46657 * 296.73082 * 14 12 11 41 41 H 1.08999 * 109.46739 * 56.73172 * 14 12 11 42 42 H 1.09000 * 109.47151 * 176.90185 * 15 12 11 43 43 H 1.08999 * 109.46534 * 56.90798 * 15 12 11 44 44 H 0.97005 * 119.99680 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6189 1.9781 0.8508 5 6 1.6180 2.1339 -1.2991 6 8 2.1606 3.4568 -1.3271 7 6 3.5873 3.4960 -1.2363 8 6 4.0598 4.9512 -1.2400 9 6 4.1958 2.7574 -2.4300 10 6 4.0293 2.8184 0.0635 11 7 3.5070 1.4445 0.0959 12 6 3.9566 0.7388 1.3033 13 1 3.5597 -0.2764 1.2997 14 6 3.4528 1.4789 2.5441 15 6 5.4857 0.6885 1.3251 16 6 5.9791 -0.1057 0.1434 17 1 5.2732 -0.5997 -0.5079 18 6 7.3316 -0.2018 -0.1064 19 7 8.1911 0.3994 0.6870 20 14 7.9429 -1.1800 -1.5758 21 1 9.4260 -1.1230 -1.6259 22 1 7.5060 -2.5933 -1.4459 23 1 7.3828 -0.6012 -2.8234 24 1 -0.3634 0.4231 -0.9364 25 1 -0.3633 -1.0226 0.1020 26 1 -0.3632 0.5995 0.8347 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.5303 2.1856 -1.3473 30 1 1.9936 1.5684 -2.1518 31 1 5.1469 4.9805 -1.1668 32 1 3.7449 5.4331 -2.1655 33 1 3.6241 5.4768 -0.3902 34 1 3.8570 1.7213 -2.4274 35 1 3.8808 3.2403 -3.3551 36 1 5.2831 2.7842 -2.3581 37 1 3.6399 3.3760 0.9153 38 1 5.1180 2.7950 0.1098 39 1 3.7368 0.9242 3.4384 40 1 3.8957 2.4744 2.5780 41 1 2.3672 1.5655 2.4996 42 1 5.8205 0.2137 2.2474 43 1 5.8832 1.7021 1.2733 44 1 9.1427 0.3321 0.5110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695818566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:05 Heat of formation + Delta-G solvation = -54.083711 kcal Electronic energy + Delta-G solvation = -21306.535841 eV Core-core repulsion = 18451.546150 eV Total energy + Delta-G solvation = -2854.989690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01639 -36.67935 -34.58648 -32.81452 -32.08221 -30.17495 -27.46120 -27.32928 -26.68388 -25.33032 -23.58370 -22.72463 -20.68181 -19.48211 -18.31744 -16.44110 -16.10191 -15.56247 -14.86824 -14.69412 -14.28950 -14.05809 -13.81152 -13.61983 -13.00068 -12.87053 -12.57357 -12.15075 -12.04835 -11.92973 -11.80110 -11.63283 -11.40701 -11.34345 -11.08956 -10.88136 -10.82929 -10.76604 -10.62075 -10.43116 -10.25033 -9.98531 -9.70657 -9.14932 -9.01205 -8.93889 -8.26436 -7.44646 -5.89804 -3.87508 3.39158 3.43398 3.46678 4.08141 4.41888 4.55253 5.08352 5.15792 5.25560 5.34965 5.41797 5.45649 5.47455 5.60219 5.65035 5.79892 5.83039 5.87609 5.91972 5.98467 6.02199 6.02983 6.06740 6.14360 6.23004 6.27097 6.31586 6.37626 6.45832 6.51697 6.60064 6.62820 6.72764 6.86093 7.00582 7.52139 7.59558 7.68823 7.90430 8.00408 8.11521 8.56454 9.17828 9.74036 11.22019 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.008247 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.294602 B = 3394.455691 C = 3850.447117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.045 3.955 4 H 0.041 0.959 5 C 0.069 3.931 6 O -0.386 6.386 7 C 0.114 3.886 8 C -0.135 4.135 9 C -0.163 4.163 10 C 0.035 3.965 11 N -0.500 5.500 12 C 0.083 3.917 13 H 0.075 0.925 14 C -0.185 4.185 15 C 0.029 3.971 16 C -0.487 4.487 17 H 0.059 0.941 18 C 0.052 3.948 19 N -0.904 5.904 20 Si 0.887 3.113 21 H -0.291 1.291 22 H -0.280 1.280 23 H -0.278 1.278 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.041 0.959 42 H 0.014 0.986 43 H 0.022 0.978 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.334 4.391 -2.190 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.064 4.064 4 H 0.059 0.941 5 C -0.008 4.008 6 O -0.305 6.305 7 C 0.075 3.925 8 C -0.193 4.193 9 C -0.220 4.220 10 C -0.093 4.093 11 N -0.224 5.224 12 C -0.025 4.025 13 H 0.093 0.907 14 C -0.244 4.244 15 C -0.008 4.008 16 C -0.526 4.526 17 H 0.077 0.923 18 C -0.147 4.147 19 N -0.545 5.545 20 Si 0.716 3.284 21 H -0.217 1.217 22 H -0.206 1.206 23 H -0.203 1.203 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.033 0.967 43 H 0.040 0.960 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.057 4.332 -2.602 13.073 hybrid contribution 0.301 -0.366 0.028 0.475 sum -11.755 3.966 -2.573 12.670 Atomic orbital electron populations 1.21805 0.96236 1.01367 1.01415 1.21556 0.94604 0.95981 1.03403 1.22319 0.90490 0.96193 0.97413 0.94088 1.22676 0.97564 0.83780 0.96769 1.87923 1.20840 1.27202 1.94542 1.21585 0.80348 0.95427 0.95181 1.21722 1.01335 0.94095 1.02140 1.22208 1.01903 1.01719 0.96179 1.22750 1.02592 0.88812 0.95178 1.62353 1.05845 1.14507 1.39685 1.21981 0.99710 0.96093 0.84675 0.90706 1.22517 0.99703 1.01513 1.00648 1.19226 0.86861 0.97685 0.97070 1.21080 0.91097 1.29920 1.10466 0.92273 1.24980 0.97181 0.96166 0.96416 1.69953 1.01816 1.44522 1.38162 0.86737 0.77303 0.80669 0.83716 1.21706 1.20554 1.20346 0.92856 0.92794 0.93069 0.91039 0.91153 0.89547 0.92337 0.90870 0.92167 0.92413 0.90724 0.93581 0.91308 0.95225 0.88064 0.92678 0.93027 0.93974 0.96747 0.95959 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.51 37.16 0.35 -1.33 16 2 C -0.12 -1.67 5.24 -26.73 -0.14 -1.81 16 3 C 0.04 0.71 1.68 -67.60 -0.11 0.60 16 4 H 0.04 0.67 6.45 -51.93 -0.33 0.34 16 5 C 0.07 1.04 5.55 37.21 0.21 1.24 16 6 O -0.39 -6.43 10.28 -35.23 -0.36 -6.79 16 7 C 0.11 1.89 1.11 -90.57 -0.10 1.79 16 8 C -0.14 -1.92 8.85 37.16 0.33 -1.60 16 9 C -0.16 -2.77 8.17 37.16 0.30 -2.46 16 10 C 0.03 0.64 3.57 -3.71 -0.01 0.63 16 11 N -0.50 -9.37 3.57 -218.41 -0.78 -10.15 16 12 C 0.08 1.66 2.00 -67.71 -0.14 1.53 16 13 H 0.07 1.51 5.99 -51.93 -0.31 1.20 16 14 C -0.18 -3.23 8.48 37.16 0.32 -2.92 16 15 C 0.03 0.71 4.20 -27.88 -0.12 0.59 16 16 C -0.49 -13.24 8.79 -34.45 -0.30 -13.54 16 17 H 0.06 1.61 7.75 -52.48 -0.41 1.20 16 18 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 19 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H 0.05 0.55 6.91 -51.94 -0.36 0.19 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 28 H 0.07 1.06 6.08 -51.93 -0.32 0.74 16 29 H 0.09 1.10 6.85 -51.93 -0.36 0.75 16 30 H 0.06 0.90 6.49 -51.93 -0.34 0.56 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.37 6.12 -51.93 -0.32 1.05 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.54 6.52 -51.93 -0.34 0.20 16 38 H 0.10 2.15 6.11 -51.93 -0.32 1.83 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.92 6.64 -51.93 -0.35 0.57 16 41 H 0.04 0.67 6.37 -51.93 -0.33 0.34 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.59 6.19 -51.93 -0.32 0.27 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -28.90 324.81 -7.80 -36.70 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.75 Total: 0.52 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 0.49 Total: -15.92 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.04 Total: -36.16 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.36 Total: -6.79 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.90 -7.80 -36.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.381 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds