Wall clock time and date at job start Mon Mar 30 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46910 * 2 1 4 4 H 1.09001 * 109.53977 * 304.89123 * 3 2 1 5 5 C 1.53102 * 109.50434 * 184.78651 * 3 2 1 6 6 N 1.47012 * 109.25921 * 183.21755 * 5 3 2 7 7 C 1.46895 * 111.00202 * 182.39118 * 6 5 3 8 8 H 1.09000 * 109.47275 * 196.94309 * 7 6 5 9 9 C 1.53008 * 109.47162 * 76.93971 * 7 6 5 10 10 C 1.53006 * 109.47094 * 316.94509 * 7 6 5 11 11 C 1.50697 * 109.46458 * 289.76524 * 10 7 6 12 12 H 1.07994 * 120.00703 * 352.84197 * 11 10 7 13 13 C 1.37880 * 119.99576 * 172.55710 * 11 10 7 14 14 N 1.31516 * 120.00193 * 0.28393 * 13 11 10 15 15 Si 1.86802 * 119.99918 * 180.27546 * 13 11 10 16 16 H 1.48493 * 109.47284 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46698 * 120.00572 * 15 13 11 18 18 H 1.48497 * 109.47105 * 240.00116 * 15 13 11 19 19 C 1.47012 * 110.75332 * 58.61231 * 6 5 3 20 20 H 1.08996 * 109.50870 * 61.36737 * 19 6 5 21 21 C 1.53001 * 109.50505 * 181.45189 * 19 6 5 22 22 C 1.53003 * 109.47137 * 177.10755 * 21 19 6 23 23 C 1.53096 * 109.25798 * 301.38677 * 19 6 5 24 24 O 1.43012 * 109.50780 * 65.00081 * 3 2 1 25 25 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46749 * 299.99713 * 1 2 3 27 27 H 1.08993 * 109.47218 * 59.99968 * 1 2 3 28 28 H 1.09003 * 109.46502 * 239.99936 * 2 1 3 29 29 H 1.08998 * 109.46763 * 120.00001 * 2 1 3 30 30 H 1.08996 * 109.50799 * 63.27987 * 5 3 2 31 31 H 1.08999 * 109.50358 * 303.15041 * 5 3 2 32 32 H 1.08999 * 109.47050 * 294.98337 * 9 7 6 33 33 H 1.09007 * 109.46647 * 54.98525 * 9 7 6 34 34 H 1.09000 * 109.47066 * 174.98477 * 9 7 6 35 35 H 1.08997 * 109.46755 * 169.77094 * 10 7 6 36 36 H 1.09000 * 109.47025 * 49.76712 * 10 7 6 37 37 H 0.96999 * 120.00057 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.47045 * 297.10860 * 21 19 6 39 39 H 1.08998 * 109.47160 * 57.10846 * 21 19 6 40 40 H 1.08998 * 109.47010 * 64.31272 * 22 21 19 41 41 H 1.08995 * 109.46984 * 184.31224 * 22 21 19 42 42 H 1.09001 * 109.47217 * 304.31492 * 22 21 19 43 43 H 1.09000 * 109.50478 * 176.78699 * 23 19 6 44 44 H 1.09000 * 109.50619 * 296.87003 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6075 1.9820 -0.8426 5 6 3.5663 1.4451 -0.1204 6 7 4.0565 2.8289 -0.0423 7 6 5.5148 2.8811 -0.2108 8 1 5.8872 3.8426 0.1427 9 6 5.8636 2.7119 -1.6909 10 6 6.1622 1.7548 0.5976 11 6 6.0337 2.0548 2.0688 12 1 5.6451 3.0086 2.3936 13 6 6.4069 1.1092 3.0003 14 7 6.8802 -0.0524 2.6048 15 14 6.2405 1.4780 4.8240 16 1 5.6862 2.8437 5.0042 17 1 5.3271 0.4872 5.4479 18 1 7.5753 1.3957 5.4694 19 6 3.6496 3.4549 1.2241 20 1 4.0818 2.9027 2.0585 21 6 4.1428 4.9029 1.2597 22 6 3.6575 5.5754 2.5455 23 6 2.1226 3.4321 1.3309 24 8 1.6621 2.0826 1.2217 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8567 1.0094 -1.0764 31 1 3.9965 0.8601 0.6925 32 1 5.5709 1.7154 -2.0216 33 1 5.3310 3.4605 -2.2775 34 1 6.9374 2.8394 -1.8280 35 1 7.2168 1.6779 0.3333 36 1 5.6617 0.8128 0.3737 37 1 7.1430 -0.7175 3.2601 38 1 5.2323 4.9164 1.2314 39 1 3.7502 5.4417 0.3974 40 1 4.1112 5.0839 3.4061 41 1 3.9432 6.6272 2.5354 42 1 2.5725 5.4941 2.6109 43 1 1.8190 3.8436 2.2936 44 1 1.6925 4.0302 0.5276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695820381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:55 Heat of formation + Delta-G solvation = -54.924022 kcal Electronic energy + Delta-G solvation = -21274.912406 eV Core-core repulsion = 18419.886277 eV Total energy + Delta-G solvation = -2855.026129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62154 -36.51692 -34.44810 -32.89456 -32.48022 -30.45008 -28.30706 -27.45755 -25.79686 -24.50722 -23.05916 -21.97823 -20.62869 -20.08270 -18.41072 -16.69309 -16.08624 -15.69490 -14.81649 -14.37514 -14.23087 -14.08327 -13.69293 -13.50973 -13.19404 -12.87849 -12.67745 -12.40079 -12.03423 -11.83333 -11.60680 -11.41841 -11.28217 -11.17375 -10.96704 -10.79085 -10.64714 -10.55611 -10.52070 -10.36824 -10.12981 -9.81061 -9.64396 -9.44696 -9.01176 -8.78710 -8.38923 -7.21657 -6.04664 -4.04963 3.27479 3.36036 3.37805 4.25347 4.41689 4.59180 5.20620 5.30660 5.34563 5.40130 5.47998 5.50907 5.68021 5.75966 5.80074 5.86597 5.89619 6.00051 6.01611 6.12658 6.14937 6.19517 6.21779 6.28138 6.31206 6.38884 6.45908 6.49221 6.57367 6.66392 6.75147 6.80049 6.84412 6.93018 7.18491 7.51034 7.62254 7.73121 7.86361 8.01666 8.06669 8.36096 8.99370 9.57182 11.06154 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.008947 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.092920 B = 3128.824977 C = 3317.574343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C 0.097 3.903 4 H 0.053 0.947 5 C 0.020 3.980 6 N -0.520 5.520 7 C 0.071 3.929 8 H 0.073 0.927 9 C -0.135 4.135 10 C -0.009 4.009 11 C -0.520 4.520 12 H 0.066 0.934 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.882 3.118 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.027 3.973 20 H 0.102 0.898 21 C -0.113 4.113 22 C -0.153 4.153 23 C 0.071 3.929 24 O -0.382 6.382 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.011 0.989 36 H 0.032 0.968 37 H 0.259 0.741 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 5.206 -5.028 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C 0.039 3.961 4 H 0.071 0.929 5 C -0.108 4.108 6 N -0.244 5.244 7 C -0.036 4.036 8 H 0.091 0.909 9 C -0.193 4.193 10 C -0.047 4.047 11 C -0.558 4.558 12 H 0.084 0.916 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.710 3.290 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.081 4.081 20 H 0.119 0.881 21 C -0.150 4.150 22 C -0.210 4.210 23 C -0.006 4.006 24 O -0.302 6.302 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.225 5.215 -5.215 11.811 hybrid contribution 0.634 -0.253 1.497 1.645 sum -8.591 4.962 -3.717 10.595 Atomic orbital electron populations 1.21688 0.95725 1.00933 1.01900 1.21511 0.96060 0.95073 1.02820 1.22154 0.94198 0.93056 0.86736 0.92913 1.22782 0.93912 0.91716 1.02429 1.62613 1.12869 1.16192 1.32752 1.21894 0.86578 1.00927 0.94244 0.90909 1.21775 0.99848 1.00714 0.96941 1.19810 0.96010 0.94301 0.94552 1.21387 1.42209 1.00938 0.91237 0.91625 1.24987 0.95227 0.95170 0.98671 1.69967 1.43306 1.05942 1.33754 0.86681 0.77725 0.78538 0.86038 1.19595 1.20991 1.21095 1.22714 0.94705 0.95670 0.95041 0.88108 1.21510 1.01541 0.94871 0.97106 1.21823 1.00828 0.99835 0.98555 1.22725 0.93908 0.83174 1.00751 1.87914 1.76388 1.26571 1.39278 0.93201 0.92131 0.93283 0.90918 0.90964 0.91213 0.90885 0.93595 0.93503 0.93219 0.97030 0.95000 0.93114 0.91057 0.92359 0.92510 0.93184 0.92924 0.89400 0.93872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.81 37.16 0.36 -1.49 16 2 C -0.12 -1.74 5.65 -26.73 -0.15 -1.89 16 3 C 0.10 1.64 2.80 -26.68 -0.07 1.57 16 4 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 5 C 0.02 0.38 3.80 -3.71 -0.01 0.37 16 6 N -0.52 -9.98 4.41 -218.41 -0.96 -10.94 16 7 C 0.07 1.45 2.35 -67.71 -0.16 1.29 16 8 H 0.07 1.50 5.42 -51.93 -0.28 1.21 16 9 C -0.13 -2.37 9.22 37.16 0.34 -2.03 16 10 C -0.01 -0.22 3.97 -27.88 -0.11 -0.33 16 11 C -0.52 -13.81 7.01 -34.44 -0.24 -14.05 16 12 H 0.07 1.69 5.04 -52.49 -0.26 1.43 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.13 13.28 55.43 0.74 -25.39 16 15 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 19 C 0.03 0.51 1.52 -67.60 -0.10 0.41 16 20 H 0.10 2.30 4.68 -51.93 -0.24 2.06 16 21 C -0.11 -1.86 4.84 -26.73 -0.13 -1.99 16 22 C -0.15 -2.21 9.62 37.16 0.36 -1.85 16 23 C 0.07 1.21 5.77 37.21 0.21 1.43 16 24 O -0.38 -7.08 10.01 -35.23 -0.35 -7.43 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.83 7.82 -51.92 -0.41 0.42 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.28 6.98 -51.93 -0.36 0.92 16 31 H 0.07 1.71 6.00 -51.93 -0.31 1.40 16 32 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.01 0.31 8.11 -51.93 -0.42 -0.11 16 36 H 0.03 0.85 5.72 -51.93 -0.30 0.55 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 38 H 0.07 1.28 5.84 -51.93 -0.30 0.98 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.69 6.22 -51.93 -0.32 0.36 16 43 H 0.09 1.37 6.48 -51.93 -0.34 1.03 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -28.46 323.69 -8.23 -36.69 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.71 Total: 2.76 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 0.20 Total: -16.97 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.23 Total: -36.33 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.35 Total: -7.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.46 -8.23 -36.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.232 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds