Wall clock time and date at job start Mon Mar 30 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47273 * 2 1 4 4 H 1.09002 * 109.47102 * 177.78921 * 3 2 1 5 5 C 1.50700 * 109.47313 * 297.78490 * 3 2 1 6 6 H 1.08005 * 119.99649 * 119.99666 * 5 3 2 7 7 C 1.37875 * 120.00136 * 300.00575 * 5 3 2 8 8 N 1.31508 * 120.00081 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99793 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47258 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47009 * 119.99692 * 9 7 5 12 12 H 1.48499 * 109.46945 * 239.99424 * 9 7 5 13 13 N 1.46903 * 109.46936 * 57.78814 * 3 2 1 14 14 C 1.44268 * 111.00127 * 63.50071 * 13 3 2 15 15 C 1.54070 * 111.97990 * 219.31363 * 14 13 3 16 16 C 1.54292 * 112.28418 * 318.91067 * 15 14 13 17 17 C 1.50504 * 112.97654 * 318.30151 * 16 15 14 18 18 C 1.54511 * 108.82960 * 92.24159 * 17 16 15 19 19 H 1.09003 * 109.05164 * 43.21611 * 18 17 16 20 20 C 1.53003 * 109.05795 * 162.19966 * 18 17 16 21 21 O 1.42897 * 109.47210 * 296.01434 * 20 18 17 22 22 C 1.42903 * 113.99806 * 180.02562 * 21 20 18 23 23 C 1.45863 * 111.53516 * 282.71064 * 18 17 16 24 24 H 1.09005 * 109.47068 * 305.36474 * 1 2 3 25 25 H 1.09000 * 109.47130 * 65.36308 * 1 2 3 26 26 H 1.08996 * 109.47500 * 185.36428 * 1 2 3 27 27 H 1.09004 * 109.46896 * 240.00387 * 2 1 3 28 28 H 1.08998 * 109.47102 * 120.00595 * 2 1 3 29 29 H 0.96999 * 119.99925 * 180.02562 * 8 7 5 30 30 H 1.09004 * 108.97646 * 339.95764 * 14 13 3 31 31 H 1.08997 * 108.97609 * 98.74812 * 14 13 3 32 32 H 1.08993 * 108.92106 * 79.63796 * 15 14 13 33 33 H 1.08998 * 108.91316 * 198.19230 * 15 14 13 34 34 H 1.08999 * 108.76873 * 79.22176 * 16 15 14 35 35 H 1.09002 * 108.76599 * 197.50137 * 16 15 14 36 36 H 1.09002 * 109.64079 * 332.41111 * 17 16 15 37 37 H 1.08996 * 109.53766 * 212.01313 * 17 16 15 38 38 H 1.09005 * 109.46709 * 56.01032 * 20 18 17 39 39 H 1.08999 * 109.46773 * 176.00730 * 20 18 17 40 40 H 1.09000 * 109.47207 * 59.99633 * 22 21 20 41 41 H 1.09000 * 109.46889 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.46948 * 299.99206 * 22 21 20 43 43 H 1.08995 * 108.79284 * 182.24006 * 23 18 17 44 44 H 1.08999 * 108.79196 * 300.58714 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 0.0396 5 6 1.5830 2.1369 -1.2570 6 1 0.9591 3.0161 -1.1918 7 6 1.9613 1.6498 -2.4901 8 7 2.7213 0.5795 -2.5694 9 14 1.3942 2.5102 -4.0482 10 1 0.5546 3.6813 -3.6893 11 1 2.5778 2.9671 -4.8201 12 1 0.5992 1.5660 -4.8737 13 7 1.5072 2.1502 1.1719 14 6 1.9916 1.5607 2.3963 15 6 0.9008 1.5108 3.4832 16 6 0.0533 2.7995 3.5213 17 6 0.8770 4.0493 3.3642 18 6 0.9318 4.4256 1.8667 19 1 -0.0618 4.3085 1.4338 20 6 1.3650 5.8870 1.7343 21 8 0.3767 6.7323 2.3263 22 6 0.6858 8.1257 2.2556 23 6 1.8716 3.5822 1.1367 24 1 -0.3633 0.5948 0.8381 25 1 -0.3633 0.4284 -0.9341 26 1 -0.3634 -1.0231 0.0961 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.9877 0.2370 -3.4370 30 1 2.3336 0.5465 2.1903 31 1 2.8313 2.1496 2.7652 32 1 0.2453 0.6623 3.2873 33 1 1.3758 1.3714 4.4543 34 1 -0.6817 2.7598 2.7173 35 1 -0.4730 2.8451 4.4748 36 1 1.8872 3.8710 3.7330 37 1 0.4184 4.8614 3.9283 38 1 2.3182 6.0308 2.2432 39 1 1.4745 6.1393 0.6796 40 1 0.7809 8.4243 1.2116 41 1 -0.1128 8.6994 2.7259 42 1 1.6250 8.3164 2.7750 43 1 1.9046 3.9107 0.0979 44 1 2.8630 3.7013 1.5738 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696584443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:24 Heat of formation + Delta-G solvation = -52.105586 kcal Electronic energy + Delta-G solvation = -20819.370569 eV Core-core repulsion = 17964.466657 eV Total energy + Delta-G solvation = -2854.903912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.16903 -37.46367 -35.07716 -32.72452 -32.24055 -30.63360 -27.70468 -26.74457 -25.64992 -24.68714 -23.34881 -22.50586 -19.94271 -19.65323 -18.35004 -16.44000 -15.98536 -15.77516 -15.55236 -14.93687 -14.37552 -14.27261 -13.75215 -13.56486 -13.11257 -12.99846 -12.32621 -12.24850 -11.96575 -11.85884 -11.70621 -11.46237 -11.09394 -10.94384 -10.76977 -10.57344 -10.42761 -10.17885 -10.07313 -9.90756 -9.89685 -9.69765 -9.49349 -9.41996 -9.27580 -8.74982 -8.39099 -7.09771 -6.00225 -4.03346 3.28825 3.37591 3.41370 3.90070 4.41575 4.94443 5.10881 5.27092 5.31652 5.34908 5.42002 5.53394 5.61673 5.65126 5.68626 5.70279 5.90605 5.98084 6.08275 6.18006 6.25368 6.31350 6.44967 6.49913 6.61660 6.66898 6.71906 6.75296 6.83430 6.86644 6.93553 6.95224 7.22202 7.32848 7.39207 7.46964 7.70039 7.82891 7.86160 8.21853 8.39528 8.68720 9.02832 9.60594 11.06196 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017152 B = 0.007856 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.092422 B = 3563.464899 C = 4803.380782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C 0.217 3.783 4 H -0.004 1.004 5 C -0.497 4.497 6 H 0.064 0.936 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.516 5.516 14 C 0.052 3.948 15 C -0.106 4.106 16 C -0.104 4.104 17 C -0.103 4.103 18 C -0.075 4.075 19 H 0.082 0.918 20 C 0.066 3.934 21 O -0.389 6.389 22 C 0.032 3.968 23 C 0.059 3.941 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.013 0.987 27 H 0.091 0.909 28 H 0.013 0.987 29 H 0.259 0.741 30 H 0.062 0.938 31 H 0.023 0.977 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.037 0.963 43 H 0.089 0.911 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 7.513 9.783 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.535 4.535 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.240 5.240 14 C -0.078 4.078 15 C -0.144 4.144 16 C -0.142 4.142 17 C -0.141 4.141 18 C -0.094 4.094 19 H 0.101 0.899 20 C -0.011 4.011 21 O -0.308 6.308 22 C -0.065 4.065 23 C -0.069 4.069 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.032 0.968 27 H 0.109 0.891 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.108 0.892 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -2.680 7.259 9.699 12.408 hybrid contribution 0.944 0.600 -1.025 1.517 sum -1.736 7.859 8.674 11.833 Atomic orbital electron populations 1.21455 0.97310 0.97205 1.01833 1.21570 0.95196 0.98084 0.99923 1.19300 0.92312 0.90849 0.86443 0.98661 1.21134 1.30839 1.11826 0.89730 0.91816 1.24891 0.95225 0.95065 0.98895 1.69885 1.36327 1.22563 1.24311 0.86562 0.78392 0.79707 0.83507 1.19748 1.21271 1.21061 1.61529 1.59635 1.00763 1.02031 1.21904 0.94783 0.99562 0.91544 1.21934 0.97846 0.97636 0.97030 1.21126 0.98606 0.93987 1.00483 1.21316 0.99835 0.97275 0.95657 1.20167 1.01971 0.90978 0.96302 0.89920 1.22661 0.90568 0.91165 0.96749 1.87873 1.46495 1.15942 1.80471 1.22685 1.00623 0.82820 1.00352 1.20838 0.94430 0.90048 1.01591 0.93196 0.92908 0.96813 0.89062 0.96809 0.93102 0.91967 0.95914 0.92507 0.93626 0.91408 0.93970 0.92949 0.92105 0.93818 0.93194 0.94285 0.90069 0.94476 0.89249 0.96550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.50 37.16 0.35 -2.30 16 2 C -0.11 -2.59 5.26 -26.73 -0.14 -2.73 16 3 C 0.22 5.26 1.64 -68.86 -0.11 5.15 16 4 H 0.00 -0.11 8.14 -51.93 -0.42 -0.54 16 5 C -0.50 -12.99 6.48 -34.44 -0.22 -13.21 16 6 H 0.06 1.68 6.60 -52.48 -0.35 1.34 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.86 11.30 55.43 0.63 -24.24 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.52 -10.63 3.12 -232.94 -0.73 -11.36 16 14 C 0.05 0.95 4.89 -4.67 -0.02 0.92 16 15 C -0.11 -1.67 6.14 -25.50 -0.16 -1.82 16 16 C -0.10 -1.60 5.42 -27.30 -0.15 -1.74 16 17 C -0.10 -1.57 4.93 -27.18 -0.13 -1.70 16 18 C -0.08 -1.25 2.17 -93.20 -0.20 -1.45 16 19 H 0.08 1.52 7.58 -51.93 -0.39 1.12 16 20 C 0.07 0.97 5.24 37.16 0.19 1.17 16 21 O -0.39 -5.71 9.96 -35.23 -0.35 -6.06 16 22 C 0.03 0.35 11.01 101.05 1.11 1.46 16 23 C 0.06 1.12 3.87 -6.70 -0.03 1.10 16 24 H 0.05 1.06 7.37 -51.93 -0.38 0.68 16 25 H 0.05 1.25 7.48 -51.93 -0.39 0.86 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 2.42 6.01 -51.93 -0.31 2.11 16 28 H 0.01 0.30 6.28 -51.93 -0.33 -0.03 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 30 H 0.06 1.20 5.62 -51.93 -0.29 0.91 16 31 H 0.02 0.41 6.50 -51.93 -0.34 0.07 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.15 7.38 -51.93 -0.38 0.77 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.79 7.14 -51.93 -0.37 0.42 16 37 H 0.06 0.89 7.41 -51.93 -0.38 0.51 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 1.90 5.57 -51.93 -0.29 1.61 16 44 H 0.02 0.31 7.23 -51.93 -0.38 -0.07 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -27.21 324.94 -8.12 -35.33 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.94 Total: -0.90 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 0.40 Total: -13.64 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.10 Total: -35.60 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.35 Total: -6.06 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.21 -8.12 -35.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696584443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.773 kcal (2) G-P(sol) polarization free energy of solvation -27.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds