Wall clock time and date at job start Mon Mar 30 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46663 * 2 1 4 4 H 1.08990 * 109.47337 * 304.99810 * 3 2 1 5 5 C 1.50701 * 109.46822 * 184.99934 * 3 2 1 6 6 H 1.07999 * 120.00110 * 240.00614 * 5 3 2 7 7 C 1.37883 * 119.99925 * 60.00137 * 5 3 2 8 8 N 1.31510 * 120.00045 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99933 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47169 * 59.99659 * 9 7 5 11 11 H 1.48499 * 109.47027 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46694 * 299.99824 * 9 7 5 13 13 N 1.46897 * 109.46815 * 65.00309 * 3 2 1 14 14 C 1.46849 * 111.00344 * 62.73329 * 13 3 2 15 15 C 1.53034 * 109.52582 * 185.83547 * 14 13 3 16 16 C 1.53117 * 109.27972 * 300.82232 * 15 14 13 17 17 C 1.53118 * 109.16385 * 57.65241 * 16 15 14 18 18 H 1.09003 * 109.50324 * 62.28352 * 17 16 15 19 19 C 1.52997 * 109.50787 * 182.40716 * 17 16 15 20 20 C 1.46855 * 110.99677 * 186.94239 * 13 3 2 21 21 H 1.09001 * 109.45397 * 294.16825 * 20 13 3 22 22 C 1.52993 * 109.46100 * 54.14422 * 20 13 3 23 23 C 1.52992 * 109.47363 * 57.74755 * 22 20 13 24 24 O 1.42903 * 109.47079 * 184.92947 * 23 22 20 25 25 H 1.09006 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47717 * 299.99571 * 1 2 3 27 27 H 1.08998 * 109.47654 * 60.00288 * 1 2 3 28 28 H 1.08998 * 109.46815 * 240.00323 * 2 1 3 29 29 H 1.09001 * 109.47002 * 120.00059 * 2 1 3 30 30 H 0.96999 * 119.99770 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.46225 * 305.85309 * 14 13 3 32 32 H 1.09000 * 109.46078 * 65.82015 * 14 13 3 33 33 H 1.08994 * 109.50296 * 180.87718 * 15 14 13 34 34 H 1.09007 * 109.50058 * 60.76036 * 15 14 13 35 35 H 1.09001 * 109.52468 * 297.74927 * 16 15 14 36 36 H 1.09002 * 109.52737 * 177.55908 * 16 15 14 37 37 H 1.09001 * 109.46871 * 59.99698 * 19 17 16 38 38 H 1.09003 * 109.47422 * 179.97438 * 19 17 16 39 39 H 1.09003 * 109.46751 * 300.00009 * 19 17 16 40 40 H 1.09003 * 109.46892 * 177.74982 * 22 20 13 41 41 H 1.09004 * 109.47136 * 297.74638 * 22 20 13 42 42 H 1.08996 * 109.47279 * 304.93563 * 23 22 20 43 43 H 1.09004 * 109.47269 * 64.93411 * 23 22 20 44 44 H 0.96706 * 113.99450 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1455 -0.2343 11 1 6.3978 0.2169 -2.6504 12 1 6.5003 2.2802 -1.3808 13 7 1.6512 2.0992 1.2553 14 6 2.2725 1.4376 2.4097 15 6 1.7336 2.0529 3.7031 16 6 2.0483 3.5513 3.7195 17 6 1.4310 4.2082 2.4818 18 1 0.3471 4.0963 2.5128 19 6 1.7914 5.6949 2.4591 20 6 1.9787 3.5304 1.2238 21 1 3.0610 3.6544 1.1865 22 6 1.3493 4.1702 -0.0152 23 6 -0.1640 3.9467 0.0084 24 8 -0.7378 4.4427 -1.2028 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0610 -2.9498 31 1 2.0375 0.3735 2.3883 32 1 3.3534 1.5716 2.3667 33 1 2.2065 1.5723 4.5594 34 1 0.6545 1.9072 3.7533 35 1 3.1285 3.6968 3.7085 36 1 1.6283 4.0019 4.6188 37 1 2.8753 5.8055 2.4263 38 1 1.3521 6.1619 1.5776 39 1 1.4040 6.1764 3.3570 40 1 1.5586 5.2400 -0.0178 41 1 1.7697 3.7156 -0.9123 42 1 -0.3725 2.8808 0.0994 43 1 -0.5962 4.4752 0.8582 44 1 -1.6972 4.3343 -1.2567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697183311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:00 Heat of formation + Delta-G solvation = -67.229642 kcal Electronic energy + Delta-G solvation = -21407.624741 eV Core-core repulsion = 18552.065001 eV Total energy + Delta-G solvation = -2855.559741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.29950 -36.23852 -35.14622 -32.74879 -32.11617 -30.92159 -28.62091 -26.40655 -25.78576 -23.89366 -22.81412 -21.84097 -20.40864 -19.02745 -18.45528 -16.92115 -16.16641 -15.35414 -15.02775 -14.39165 -14.30795 -13.86798 -13.43232 -13.29662 -12.92056 -12.84556 -12.53048 -12.18641 -11.84745 -11.61160 -11.32778 -11.26390 -11.06395 -11.02865 -10.90765 -10.82801 -10.63477 -10.35191 -10.17347 -9.92170 -9.89234 -9.60823 -9.49189 -9.29277 -9.12886 -8.91615 -8.28456 -7.05617 -5.94790 -4.07930 3.29223 3.34689 3.37125 4.42096 4.77267 4.93513 5.21113 5.26686 5.29877 5.39243 5.62988 5.78636 5.82812 5.91783 5.98065 5.98719 6.12489 6.18270 6.23960 6.31884 6.33074 6.37346 6.43638 6.49559 6.51567 6.58070 6.66932 6.72021 6.82694 6.84805 6.98092 7.04146 7.12932 7.23425 7.39315 7.67436 7.79933 8.05303 8.10160 8.21373 8.38499 8.53057 9.02277 9.59241 11.03917 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.008821 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.162004 B = 3173.362792 C = 3474.395634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.209 3.791 4 H 0.049 0.951 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.884 3.116 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.529 5.529 14 C 0.061 3.939 15 C -0.117 4.117 16 C -0.111 4.111 17 C -0.088 4.088 18 H 0.071 0.929 19 C -0.147 4.147 20 C 0.104 3.896 21 H 0.046 0.954 22 C -0.111 4.111 23 C 0.081 3.919 24 O -0.581 6.581 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.032 0.968 44 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 5.501 8.223 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.103 3.897 4 H 0.067 0.933 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.253 5.253 14 C -0.068 4.068 15 C -0.155 4.155 16 C -0.149 4.149 17 C -0.107 4.107 18 H 0.090 0.910 19 C -0.205 4.205 20 C -0.005 4.005 21 H 0.064 0.936 22 C -0.149 4.149 23 C 0.004 3.996 24 O -0.386 6.386 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.854 5.497 7.960 11.307 hybrid contribution 1.502 -0.158 -0.063 1.512 sum -4.352 5.339 7.897 10.479 Atomic orbital electron populations 1.21720 0.99042 0.98358 1.00394 1.21635 0.92108 0.99490 1.01882 1.19376 0.92981 0.90977 0.86335 0.93287 1.21692 0.92994 1.38020 1.05343 0.92821 1.24884 0.97535 0.95139 0.95751 1.69857 1.34739 1.38276 1.09387 0.86795 0.86583 0.78166 0.77265 1.20462 1.21301 1.20433 1.62412 1.57784 1.00687 1.04453 1.21897 0.96979 0.98383 0.89513 1.21633 1.01051 0.95123 0.97716 1.21591 1.00235 0.95975 0.97088 1.21266 1.00490 0.93876 0.95070 0.91017 1.21878 1.01357 0.96172 1.01086 1.21287 0.97559 0.89543 0.92144 0.93564 1.21571 0.93677 0.99840 0.99806 1.22269 0.94224 0.98759 0.84354 1.86485 1.25157 1.85352 1.41588 0.95704 0.93458 0.94267 0.89044 0.94944 0.92903 0.91231 0.94657 0.92885 0.92076 0.92667 0.93034 0.92986 0.92414 0.93378 0.92418 0.89779 0.91629 0.94976 0.78611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.80 37.16 0.36 -2.37 16 2 C -0.11 -2.61 5.10 -26.73 -0.14 -2.75 16 3 C 0.21 4.93 1.12 -68.86 -0.08 4.85 16 4 H 0.05 1.29 5.67 -51.93 -0.29 1.00 16 5 C -0.54 -14.15 7.20 -34.44 -0.25 -14.40 16 6 H 0.05 1.42 5.84 -52.49 -0.31 1.12 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -24.70 11.29 55.43 0.63 -24.08 16 9 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.53 -10.46 3.02 -220.14 -0.66 -11.13 16 14 C 0.06 1.15 4.80 -3.83 -0.02 1.13 16 15 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16 16 C -0.11 -1.60 5.29 -26.61 -0.14 -1.74 16 17 C -0.09 -1.33 2.12 -90.54 -0.19 -1.53 16 18 H 0.07 1.09 6.56 -51.93 -0.34 0.75 16 19 C -0.15 -1.96 8.86 37.16 0.33 -1.63 16 20 C 0.10 1.92 1.34 -67.72 -0.09 1.83 16 21 H 0.05 0.98 7.09 -51.93 -0.37 0.61 16 22 C -0.11 -2.09 4.52 -26.74 -0.12 -2.21 16 23 C 0.08 1.37 6.36 37.15 0.24 1.61 16 24 O -0.58 -9.75 13.66 -35.23 -0.48 -10.23 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.89 7.75 -51.93 -0.40 0.49 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 29 H 0.03 0.74 6.11 -51.93 -0.32 0.42 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.07 1.36 6.00 -51.93 -0.31 1.05 16 32 H 0.04 0.74 6.52 -51.93 -0.34 0.40 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.77 6.41 -51.93 -0.33 0.44 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 1.01 6.34 -51.93 -0.33 0.68 16 41 H 0.08 1.90 6.31 -51.93 -0.33 1.57 16 42 H 0.07 1.20 7.08 -51.93 -0.37 0.84 16 43 H 0.03 0.49 6.73 -51.93 -0.35 0.14 16 44 H 0.37 4.31 9.12 45.56 0.42 4.72 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -27.75 319.65 -7.87 -35.62 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.80 Total: 6.23 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.35 Total: -17.39 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.04 Total: -35.20 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.48 Total: -10.23 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.75 -7.87 -35.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697183311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.605 kcal (2) G-P(sol) polarization free energy of solvation -27.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds