Wall clock time and date at job start Mon Mar 30 2020 06:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46663 * 2 1 4 4 H 1.08990 * 109.47337 * 304.99810 * 3 2 1 5 5 C 1.50701 * 109.46822 * 184.99934 * 3 2 1 6 6 H 1.07999 * 120.00110 * 240.00614 * 5 3 2 7 7 C 1.37883 * 119.99925 * 60.00137 * 5 3 2 8 8 N 1.31510 * 120.00045 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99933 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47169 * 59.99659 * 9 7 5 11 11 H 1.48499 * 109.47027 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46694 * 299.99824 * 9 7 5 13 13 N 1.46897 * 109.46815 * 65.00309 * 3 2 1 14 14 C 1.46849 * 111.00344 * 62.73329 * 13 3 2 15 15 C 1.53034 * 109.52582 * 185.83547 * 14 13 3 16 16 C 1.53117 * 109.27972 * 300.82232 * 15 14 13 17 17 C 1.53118 * 109.16385 * 57.65241 * 16 15 14 18 18 H 1.09003 * 109.50324 * 62.28352 * 17 16 15 19 19 C 1.52997 * 109.50787 * 182.40716 * 17 16 15 20 20 C 1.46855 * 110.99677 * 186.94239 * 13 3 2 21 21 H 1.09001 * 109.45397 * 294.16825 * 20 13 3 22 22 C 1.52993 * 109.46100 * 54.14422 * 20 13 3 23 23 C 1.52992 * 109.47363 * 57.74755 * 22 20 13 24 24 O 1.42903 * 109.47079 * 184.92947 * 23 22 20 25 25 H 1.09006 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47717 * 299.99571 * 1 2 3 27 27 H 1.08998 * 109.47654 * 60.00288 * 1 2 3 28 28 H 1.08998 * 109.46815 * 240.00323 * 2 1 3 29 29 H 1.09001 * 109.47002 * 120.00059 * 2 1 3 30 30 H 0.96999 * 119.99770 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.46225 * 305.85309 * 14 13 3 32 32 H 1.09000 * 109.46078 * 65.82015 * 14 13 3 33 33 H 1.08994 * 109.50296 * 180.87718 * 15 14 13 34 34 H 1.09007 * 109.50058 * 60.76036 * 15 14 13 35 35 H 1.09001 * 109.52468 * 297.74927 * 16 15 14 36 36 H 1.09002 * 109.52737 * 177.55908 * 16 15 14 37 37 H 1.09001 * 109.46871 * 59.99698 * 19 17 16 38 38 H 1.09003 * 109.47422 * 179.97438 * 19 17 16 39 39 H 1.09003 * 109.46751 * 300.00009 * 19 17 16 40 40 H 1.09003 * 109.46892 * 177.74982 * 22 20 13 41 41 H 1.09004 * 109.47136 * 297.74638 * 22 20 13 42 42 H 1.08996 * 109.47279 * 304.93563 * 23 22 20 43 43 H 1.09004 * 109.47269 * 64.93411 * 23 22 20 44 44 H 0.96706 * 113.99450 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1455 -0.2343 11 1 6.3978 0.2169 -2.6504 12 1 6.5003 2.2802 -1.3808 13 7 1.6512 2.0992 1.2553 14 6 2.2725 1.4376 2.4097 15 6 1.7336 2.0529 3.7031 16 6 2.0483 3.5513 3.7195 17 6 1.4310 4.2082 2.4818 18 1 0.3471 4.0963 2.5128 19 6 1.7914 5.6949 2.4591 20 6 1.9787 3.5304 1.2238 21 1 3.0610 3.6544 1.1865 22 6 1.3493 4.1702 -0.0152 23 6 -0.1640 3.9467 0.0084 24 8 -0.7378 4.4427 -1.2028 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0610 -2.9498 31 1 2.0375 0.3735 2.3883 32 1 3.3534 1.5716 2.3667 33 1 2.2065 1.5723 4.5594 34 1 0.6545 1.9072 3.7533 35 1 3.1285 3.6968 3.7085 36 1 1.6283 4.0019 4.6188 37 1 2.8753 5.8055 2.4263 38 1 1.3521 6.1619 1.5776 39 1 1.4040 6.1764 3.3570 40 1 1.5586 5.2400 -0.0178 41 1 1.7697 3.7156 -0.9123 42 1 -0.3725 2.8808 0.0994 43 1 -0.5962 4.4752 0.8582 44 1 -1.6972 4.3343 -1.2567 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697183311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:59 Heat of formation + Delta-G solvation = -85.170587 kcal Electronic energy + Delta-G solvation = -21408.402719 eV Core-core repulsion = 18552.065001 eV Total energy + Delta-G solvation = -2856.337718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79848 -37.60347 -36.77374 -34.20838 -33.93870 -32.58238 -30.04082 -28.27882 -27.07687 -25.57958 -24.40681 -23.35169 -21.77122 -20.71873 -20.02783 -18.29383 -18.05547 -17.04798 -16.65108 -16.02958 -15.77979 -15.33026 -14.83446 -14.69602 -14.57574 -14.38696 -14.07537 -13.61094 -13.26024 -13.16675 -13.00596 -12.82753 -12.75369 -12.58974 -12.52276 -12.33149 -12.21602 -12.00072 -11.62173 -11.52337 -11.49962 -11.28408 -11.07981 -10.85696 -10.66405 -10.52556 -10.31494 -8.83211 -7.99696 -6.21972 1.34152 1.35305 1.41942 2.39246 3.17065 3.39113 3.53574 3.95495 3.99777 4.13014 4.35410 4.40837 4.50190 4.57020 4.63910 4.68779 4.76778 4.77958 4.83094 4.86731 4.93679 5.01765 5.06527 5.10889 5.12477 5.19651 5.24861 5.30579 5.37029 5.40188 5.46163 5.50919 5.53393 5.56514 5.62567 5.71789 5.87541 6.14433 6.28761 6.45943 6.79344 7.01397 7.03699 7.48202 8.93319 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.008821 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.162004 B = 3173.362792 C = 3474.395634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 C 0.219 3.781 4 H 0.018 0.982 5 C -0.546 4.546 6 H 0.043 0.957 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.937 3.063 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.517 5.517 14 C 0.060 3.940 15 C -0.108 4.108 16 C -0.109 4.109 17 C -0.081 4.081 18 H 0.082 0.918 19 C -0.143 4.143 20 C 0.106 3.894 21 H 0.011 0.989 22 C -0.108 4.108 23 C 0.092 3.908 24 O -0.600 6.600 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.259 0.741 31 H 0.059 0.941 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.050 0.950 43 H 0.062 0.938 44 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 6.532 10.446 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.148 4.148 3 C 0.112 3.888 4 H 0.036 0.964 5 C -0.586 4.586 6 H 0.061 0.939 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.764 3.236 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.241 5.241 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.147 4.147 17 C -0.100 4.100 18 H 0.101 0.899 19 C -0.201 4.201 20 C -0.003 4.003 21 H 0.029 0.971 22 C -0.146 4.146 23 C 0.015 3.985 24 O -0.408 6.408 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.025 0.975 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -7.061 6.532 10.196 14.017 hybrid contribution 1.872 -0.457 -0.775 2.077 sum -5.189 6.075 9.420 12.352 Atomic orbital electron populations 1.21555 0.96228 0.99656 1.00610 1.21484 0.94584 0.98629 1.00071 1.19076 0.91204 0.91220 0.87299 0.96446 1.21963 0.94632 1.37139 1.04826 0.93887 1.25541 1.01187 0.95264 0.95755 1.69987 1.35992 1.39147 1.09735 0.85938 0.82342 0.77997 0.77304 1.19996 1.20912 1.20414 1.62397 1.57172 1.01351 1.03176 1.21945 0.95453 0.98275 0.91157 1.21578 1.01643 0.95680 0.95720 1.21602 0.99834 0.95318 0.97910 1.21232 1.00817 0.94778 0.93147 0.89938 1.21846 1.01074 0.94762 1.02406 1.21326 0.95739 0.88975 0.94305 0.97061 1.21496 0.95315 1.00019 0.97762 1.22089 0.92750 0.98219 0.85481 1.86432 1.27442 1.85236 1.41651 0.93838 0.92030 0.95113 0.92400 0.95091 0.93125 0.92219 0.97486 0.90952 0.90898 0.93655 0.89765 0.93700 0.92553 0.90624 0.91216 0.94699 0.93204 0.91955 0.75947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.80 71.98 0.71 -4.13 16 2 C -0.11 -5.18 5.10 30.59 0.16 -5.03 16 3 C 0.22 10.72 1.12 44.17 0.05 10.77 16 4 H 0.02 0.98 5.67 -2.39 -0.01 0.97 16 5 C -0.55 -29.80 7.20 25.60 0.18 -29.62 16 6 H 0.04 2.39 5.84 -2.91 -0.02 2.37 16 7 C 0.02 1.24 5.29 84.66 0.45 1.69 16 8 N -0.91 -52.79 11.29 21.45 0.24 -52.55 16 9 Si 0.94 44.65 29.54 68.60 2.03 46.68 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 N -0.52 -20.60 3.02 -850.40 -2.57 -23.17 16 14 C 0.06 2.25 4.80 86.32 0.41 2.67 16 15 C -0.11 -3.01 6.09 30.64 0.19 -2.82 16 16 C -0.11 -2.79 5.29 30.67 0.16 -2.63 16 17 C -0.08 -2.24 2.12 -10.74 -0.02 -2.26 16 18 H 0.08 2.16 6.56 -2.39 -0.02 2.14 16 19 C -0.14 -3.39 8.86 71.98 0.64 -2.75 16 20 C 0.11 3.92 1.34 44.94 0.06 3.98 16 21 H 0.01 0.50 7.09 -2.39 -0.02 0.48 16 22 C -0.11 -4.12 4.52 30.59 0.14 -3.98 16 23 C 0.09 3.00 6.36 71.98 0.46 3.46 16 24 O -0.60 -19.45 13.66 -148.98 -2.04 -21.49 16 25 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 3.15 5.95 -2.39 -0.01 3.14 16 29 H 0.03 1.44 6.11 -2.39 -0.01 1.42 16 30 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 31 H 0.06 2.33 6.00 -2.39 -0.01 2.32 16 32 H 0.01 0.30 6.52 -2.39 -0.02 0.28 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.35 6.41 -2.39 -0.02 1.33 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 2.43 6.34 -2.39 -0.02 2.41 16 41 H 0.03 1.66 6.31 -2.39 -0.02 1.64 16 42 H 0.05 1.79 7.08 -2.39 -0.02 1.77 16 43 H 0.06 1.68 6.73 -2.38 -0.02 1.66 16 44 H 0.39 8.41 9.12 -74.05 -0.68 7.73 16 Total: -1.00 -62.48 319.65 1.55 -60.93 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.30 Total: 20.25 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 3.58 Total: -30.66 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -2.32 Total: -75.71 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -2.04 Total: -21.49 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -62.48 1.55 -60.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697183311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.241 kcal (2) G-P(sol) polarization free energy of solvation -62.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds