Wall clock time and date at job start Mon Mar 30 2020 06:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 N 1.46498 * 109.47366 * 119.99868 * 2 1 3 5 5 C 1.36940 * 120.00324 * 118.25800 * 4 2 1 6 6 H 1.07995 * 120.00012 * 150.53810 * 5 4 2 7 7 C 1.38815 * 119.99866 * 330.54459 * 5 4 2 8 8 N 1.31623 * 119.99857 * 341.57275 * 7 5 4 9 9 Si 1.86799 * 120.00071 * 161.56947 * 7 5 4 10 10 H 1.48507 * 109.46775 * 89.99973 * 9 7 5 11 11 H 1.48500 * 109.46907 * 209.99686 * 9 7 5 12 12 H 1.48495 * 109.47037 * 330.00021 * 9 7 5 13 13 C 1.46502 * 120.00195 * 298.26500 * 4 2 1 14 14 C 1.52999 * 109.47229 * 89.99254 * 13 4 2 15 15 C 1.53001 * 109.47101 * 180.02562 * 14 13 4 16 16 O 1.42898 * 109.47045 * 180.02562 * 15 14 13 17 17 C 1.42903 * 113.99781 * 180.02562 * 16 15 14 18 18 C 1.54892 * 110.49028 * 93.24023 * 17 16 15 19 19 C 1.55233 * 102.58763 * 156.67778 * 18 17 16 20 20 C 1.54270 * 104.23099 * 322.08016 * 19 18 17 21 21 C 1.53871 * 106.59904 * 23.61621 * 20 19 18 22 22 H 1.09002 * 109.46857 * 300.00048 * 1 2 3 23 23 H 1.09004 * 109.47368 * 59.99952 * 1 2 3 24 24 H 1.09002 * 109.47080 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47351 * 240.00107 * 2 1 3 26 26 H 1.09005 * 109.47011 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46665 * 299.99587 * 3 2 1 28 28 H 1.08992 * 109.47421 * 60.00154 * 3 2 1 29 29 H 0.96998 * 120.00028 * 180.02562 * 8 7 5 30 30 H 1.09007 * 109.46683 * 329.99416 * 13 4 2 31 31 H 1.08999 * 109.47070 * 209.99571 * 13 4 2 32 32 H 1.09003 * 109.46776 * 60.00770 * 14 13 4 33 33 H 1.08999 * 109.47353 * 300.00143 * 14 13 4 34 34 H 1.08998 * 109.47089 * 59.99864 * 15 14 13 35 35 H 1.09005 * 109.46925 * 300.00549 * 15 14 13 36 36 H 1.09003 * 110.43500 * 330.69363 * 17 16 15 37 37 H 1.09004 * 110.75150 * 275.07041 * 18 17 16 38 38 H 1.09000 * 110.75572 * 38.43523 * 18 17 16 39 39 H 1.09000 * 110.46701 * 203.39621 * 19 18 17 40 40 H 1.09000 * 110.58656 * 80.83014 * 19 18 17 41 41 H 1.09002 * 110.03402 * 264.32839 * 20 19 18 42 42 H 1.09004 * 110.07050 * 142.91788 * 20 19 18 43 43 H 1.09000 * 110.03326 * 240.71318 * 21 20 19 44 44 H 1.08996 * 110.07736 * 119.30333 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.7760 -1.8244 1.0709 6 1 3.5100 -2.0693 1.8242 7 6 2.6004 -2.6589 -0.0244 8 7 1.4985 -2.5824 -0.7402 9 14 3.9282 -3.8904 -0.4826 10 1 3.6773 -5.1736 0.2216 11 1 3.9066 -4.1185 -1.9498 12 1 5.2558 -3.3582 -0.0838 13 6 1.6961 -0.1683 2.5264 14 6 0.3860 -0.7896 3.0148 15 6 0.0492 -0.2437 4.4038 16 8 -1.1741 -0.8245 4.8601 17 6 -1.5816 -0.3785 6.1552 18 6 -2.5448 0.8285 6.0347 19 6 -3.3231 0.7754 7.3767 20 6 -3.5257 -0.7314 7.6383 21 6 -2.4184 -1.4651 6.8617 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.3757 -3.1658 -1.5053 30 1 1.5874 0.9151 2.4748 31 1 2.4985 -0.4203 3.2198 32 1 0.4949 -1.8730 3.0664 33 1 -0.4163 -0.5376 2.3214 34 1 -0.0596 0.8396 4.3518 35 1 0.8516 -0.4953 5.0974 36 1 -0.7125 -0.1145 6.7577 37 1 -1.9866 1.7606 5.9455 38 1 -3.2215 0.6999 5.1900 39 1 -4.2853 1.2784 7.2795 40 1 -2.7373 1.2263 8.1777 41 1 -4.5053 -1.0447 7.2774 42 1 -3.4360 -0.9414 8.7042 43 1 -2.8606 -2.1345 6.1238 44 1 -1.7907 -2.0310 7.5500 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699947518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:18 Heat of formation + Delta-G solvation = -51.138194 kcal Electronic energy + Delta-G solvation = -19708.979065 eV Core-core repulsion = 16854.117102 eV Total energy + Delta-G solvation = -2854.861963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.82866 -36.89836 -35.82921 -32.23351 -31.69206 -29.34020 -28.77586 -27.50379 -26.00194 -24.93415 -22.87747 -20.86524 -20.72264 -20.13169 -18.97221 -17.01093 -16.58521 -15.75507 -15.27525 -14.70600 -14.41560 -14.11281 -13.60861 -13.42224 -13.03994 -12.78171 -12.43542 -12.27283 -12.09232 -11.52744 -11.37022 -11.36094 -11.22648 -11.17222 -11.04006 -10.86496 -10.77692 -10.66843 -10.56091 -10.36178 -10.14449 -9.92264 -9.74096 -9.45714 -9.28696 -9.13442 -8.36844 -6.59468 -5.73854 -3.17353 3.40622 3.47989 3.50353 3.92157 4.51271 4.54784 4.56223 4.83257 5.19413 5.35651 5.40570 5.42654 5.44280 5.50005 5.60503 5.63747 5.72256 5.76721 5.82900 5.92415 6.07654 6.12893 6.14868 6.18438 6.21055 6.32815 6.39770 6.53140 6.57932 6.62972 6.75710 6.84214 6.93103 7.07801 7.12755 7.33789 7.64218 7.73407 7.79967 7.92316 8.55257 9.29841 9.92726 10.46676 11.32959 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027040 B = 0.004356 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.247192 B = 6426.488372 C = 6974.586959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.180 3.820 3 C -0.164 4.164 4 N -0.582 5.582 5 C -0.255 4.255 6 H 0.063 0.937 7 C 0.006 3.994 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.152 3.848 14 C -0.141 4.141 15 C 0.065 3.935 16 O -0.378 6.378 17 C 0.082 3.918 18 C -0.147 4.147 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.124 4.124 22 H 0.028 0.972 23 H 0.025 0.975 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.045 0.955 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.252 0.748 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 6.930 12.623 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.074 3.926 3 C -0.223 4.223 4 N -0.302 5.302 5 C -0.385 4.385 6 H 0.081 0.919 7 C -0.193 4.193 8 N -0.537 5.537 9 Si 0.727 3.273 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.025 3.975 14 C -0.181 4.181 15 C -0.012 4.012 16 O -0.297 6.297 17 C 0.023 3.977 18 C -0.185 4.185 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.162 4.162 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.142 6.694 12.347 15.757 hybrid contribution 0.655 -0.537 -0.087 0.851 sum -6.487 6.158 12.260 15.176 Atomic orbital electron populations 1.22230 0.98839 1.02027 0.97391 1.20272 0.91581 0.88627 0.92155 1.22371 1.00610 1.00101 0.99234 1.44002 1.59654 1.27750 0.98811 1.19143 1.11961 0.99309 1.08044 0.91890 1.25028 0.96407 0.97360 1.00510 1.70034 1.23494 1.40034 1.20148 0.86382 0.82055 0.81370 0.77462 1.21490 1.21640 1.20572 1.20723 0.92998 0.95445 0.88354 1.22491 1.00869 1.02329 0.92397 1.22702 0.84852 0.96281 0.97387 1.87987 1.41349 1.68012 1.32394 1.22940 0.95983 0.93559 0.85193 1.23054 0.98903 0.98490 0.98042 1.22327 1.00226 0.96331 0.97223 1.22078 0.98847 0.95183 0.99846 1.22186 0.97059 0.97965 0.98966 0.95327 0.95611 0.90975 0.88530 0.93621 0.94265 0.94380 0.93764 0.94477 0.94178 0.91352 0.91194 0.94338 0.94167 0.92043 0.91625 0.90453 0.91596 0.91708 0.91645 0.91844 0.90442 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.09 37.15 0.30 -2.96 16 2 C 0.18 4.24 2.39 -67.93 -0.16 4.08 16 3 C -0.16 -3.26 9.14 37.16 0.34 -2.92 16 4 N -0.58 -14.38 2.41 -165.66 -0.40 -14.78 16 5 C -0.25 -6.94 9.57 -15.06 -0.14 -7.08 16 6 H 0.06 1.71 7.89 -52.49 -0.41 1.29 16 7 C 0.01 0.16 4.85 -17.43 -0.08 0.08 16 8 N -0.89 -25.35 10.40 55.49 0.58 -24.77 16 9 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.15 3.19 5.13 -4.04 -0.02 3.17 16 14 C -0.14 -2.85 5.64 -26.73 -0.15 -3.00 16 15 C 0.06 1.08 5.79 37.16 0.22 1.29 16 16 O -0.38 -6.39 10.05 -35.23 -0.35 -6.75 16 17 C 0.08 1.06 3.33 -25.07 -0.08 0.98 16 18 C -0.15 -1.68 6.65 -24.55 -0.16 -1.84 16 19 C -0.12 -1.13 6.84 -24.88 -0.17 -1.30 16 20 C -0.12 -1.13 6.80 -25.61 -0.17 -1.30 16 21 C -0.12 -1.42 6.56 -25.61 -0.17 -1.59 16 22 H 0.03 0.59 6.11 -51.93 -0.32 0.27 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 1.83 7.40 -51.93 -0.38 1.44 16 25 H 0.10 2.59 5.85 -51.93 -0.30 2.29 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.70 6.61 -51.93 -0.34 0.36 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.04 0.72 6.34 -51.93 -0.33 0.39 16 31 H 0.04 0.82 8.04 -51.93 -0.42 0.41 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.07 1.51 5.43 -51.93 -0.28 1.22 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -28.48 338.24 -8.82 -37.30 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -8.25 Total: -0.36 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -0.47 Total: -12.38 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.18 Total: -39.55 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.35 Total: -6.75 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.48 -8.82 -37.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699947518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.836 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds