Wall clock time and date at job start Mon Mar 30 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47087 * 2 1 4 4 H 1.08998 * 109.46787 * 176.34560 * 3 2 1 5 5 C 1.50694 * 109.47032 * 56.34250 * 3 2 1 6 6 H 1.08010 * 120.00277 * 244.97654 * 5 3 2 7 7 C 1.37873 * 120.00395 * 64.98190 * 5 3 2 8 8 N 1.31517 * 119.99564 * 7.87791 * 7 5 3 9 9 Si 1.86798 * 120.00485 * 187.88114 * 7 5 3 10 10 H 1.48500 * 109.47044 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47477 * 239.99830 * 9 7 5 12 12 H 1.48502 * 109.46955 * 119.99697 * 9 7 5 13 13 N 1.46902 * 109.46676 * 296.34315 * 3 2 1 14 14 C 1.46896 * 110.99891 * 274.36909 * 13 3 2 15 15 C 1.53005 * 109.46872 * 184.54062 * 14 13 3 16 16 H 1.08996 * 110.46118 * 308.67235 * 15 14 13 17 17 C 1.54482 * 110.50961 * 186.06706 * 15 14 13 18 18 H 1.08996 * 110.37085 * 146.50669 * 17 15 14 19 19 C 1.53007 * 110.37213 * 24.16574 * 17 15 14 20 20 O 1.44430 * 104.80428 * 265.33678 * 17 15 14 21 21 C 1.44430 * 105.27046 * 319.48751 * 20 17 15 22 22 H 1.08994 * 110.37146 * 281.56702 * 21 20 17 23 23 C 1.53002 * 110.36840 * 159.34421 * 21 20 17 24 24 C 1.54470 * 104.80395 * 40.51638 * 21 20 17 25 25 H 1.09001 * 110.51731 * 94.66555 * 24 21 20 26 26 C 1.53007 * 110.50814 * 217.37585 * 24 21 20 27 27 H 1.08994 * 109.47038 * 186.11980 * 1 2 3 28 28 H 1.09000 * 109.47049 * 306.12592 * 1 2 3 29 29 H 1.09003 * 109.46981 * 66.12314 * 1 2 3 30 30 H 1.08994 * 109.47010 * 239.99983 * 2 1 3 31 31 H 1.08993 * 109.47092 * 119.99349 * 2 1 3 32 32 H 0.97000 * 120.00079 * 5.68237 * 8 7 5 33 33 H 1.00901 * 111.00327 * 38.32798 * 13 3 2 34 34 H 1.09005 * 109.47635 * 304.54199 * 14 13 3 35 35 H 1.09000 * 109.47292 * 64.54249 * 14 13 3 36 36 H 1.08994 * 109.46810 * 54.49023 * 19 17 15 37 37 H 1.08997 * 109.46940 * 174.49694 * 19 17 15 38 38 H 1.08999 * 109.46973 * 294.49248 * 19 17 15 39 39 H 1.09000 * 109.47041 * 61.45353 * 23 21 20 40 40 H 1.08997 * 109.46936 * 181.45307 * 23 21 20 41 41 H 1.09003 * 109.47443 * 301.45373 * 23 21 20 42 42 H 1.09006 * 109.47146 * 174.64148 * 26 24 21 43 43 H 1.08994 * 109.46890 * 294.63429 * 26 24 21 44 44 H 1.08996 * 109.47263 * 54.64072 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1280 1.4432 0.0655 5 6 1.4651 2.1786 1.1826 6 1 0.7871 3.0049 1.0269 7 6 1.8044 1.7974 2.4634 8 7 2.7447 0.8979 2.6543 9 14 0.9289 2.5585 3.9275 10 1 -0.0805 3.5360 3.4472 11 1 1.9185 3.2517 4.7906 12 1 0.2519 1.4921 4.7084 13 7 1.6238 2.1090 -1.2412 14 6 2.5825 1.8516 -2.3240 15 6 2.1776 2.6508 -3.5643 16 1 1.1297 2.4738 -3.8063 17 6 3.0795 2.2830 -4.7634 18 1 2.5139 2.3352 -5.6936 19 6 3.6709 0.8843 -4.5758 20 8 4.1273 3.2770 -4.7556 21 6 3.4678 4.5225 -4.4395 22 1 2.9634 4.9190 -5.3206 23 6 4.4778 5.5387 -3.9028 24 6 2.4391 4.1579 -3.3464 25 1 2.8566 4.3337 -2.3550 26 6 1.1490 4.9586 -3.5359 27 1 -0.3633 -1.0218 0.1096 28 1 -0.3633 0.6059 0.8301 29 1 -0.3633 0.4160 -0.9397 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.2560 0.5633 1.9010 33 1 0.6924 1.8271 -1.5082 34 1 3.5800 2.1550 -2.0059 35 1 2.5849 0.7879 -2.5619 36 1 2.8661 0.1697 -4.4040 37 1 4.2239 0.6006 -5.4712 38 1 4.3440 0.8865 -3.7185 39 1 5.2286 5.7427 -4.6662 40 1 3.9611 6.4631 -3.6450 41 1 4.9634 5.1341 -3.0147 42 1 0.4029 4.6211 -2.8165 43 1 1.3524 6.0178 -3.3785 44 1 0.7728 4.8073 -4.5476 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701056243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:11 Heat of formation + Delta-G solvation = -70.785295 kcal Electronic energy + Delta-G solvation = -20499.429564 eV Core-core repulsion = 17643.715639 eV Total energy + Delta-G solvation = -2855.713925 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99845 -36.73495 -33.94392 -33.46487 -31.85952 -30.33574 -29.29196 -27.31912 -25.57181 -23.64210 -23.29146 -22.90865 -20.61388 -19.65361 -19.55336 -16.67843 -16.13825 -15.71094 -15.18573 -14.48549 -14.14314 -13.96397 -13.62668 -13.25504 -13.17139 -13.10450 -12.65452 -12.40112 -12.34774 -12.07158 -11.87180 -11.77738 -11.58546 -11.33777 -11.08061 -10.77785 -10.74355 -10.47864 -10.37680 -10.23848 -10.10571 -10.06116 -9.99164 -9.83314 -9.49180 -8.59571 -8.23281 -7.23752 -6.27172 -3.95678 3.47151 3.49766 3.63901 3.91865 4.55001 4.68479 4.79843 4.89229 5.03502 5.24190 5.37174 5.41145 5.42326 5.52341 5.54259 5.62183 5.66650 5.74894 5.77932 5.89222 5.99504 6.05631 6.08397 6.11416 6.15339 6.17459 6.26093 6.33018 6.35546 6.38853 6.49678 6.61032 6.69266 7.01941 7.05519 7.09598 7.28000 7.32395 7.97786 8.31677 8.49795 8.69425 8.96422 9.71941 11.08580 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.005797 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.906920 B = 4829.006071 C = 5313.498307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.150 4.150 3 C 0.205 3.795 4 H 0.023 0.977 5 C -0.567 4.567 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.675 5.675 14 C 0.068 3.932 15 C -0.108 4.108 16 H 0.077 0.923 17 C 0.076 3.924 18 H 0.062 0.938 19 C -0.147 4.147 20 O -0.372 6.372 21 C 0.071 3.929 22 H 0.062 0.938 23 C -0.145 4.145 24 C -0.106 4.106 25 H 0.096 0.904 26 C -0.137 4.137 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.018 0.982 31 H 0.066 0.934 32 H 0.268 0.732 33 H 0.325 0.675 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 4.106 -14.325 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.190 4.190 3 C 0.097 3.903 4 H 0.041 0.959 5 C -0.606 4.606 6 H 0.074 0.926 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.896 3.104 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.305 5.305 14 C -0.062 4.062 15 C -0.128 4.128 16 H 0.096 0.904 17 C 0.018 3.982 18 H 0.080 0.920 19 C -0.204 4.204 20 O -0.291 6.291 21 C 0.014 3.986 22 H 0.080 0.920 23 C -0.202 4.202 24 C -0.124 4.124 25 H 0.114 0.886 26 C -0.194 4.194 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.856 4.629 -12.532 13.387 hybrid contribution -0.271 -0.944 -1.880 2.121 sum -1.127 3.685 -14.412 14.919 Atomic orbital electron populations 1.21588 0.96843 0.99173 1.01212 1.22189 0.96056 1.01384 0.99334 1.19308 0.95169 0.88297 0.87572 0.95947 1.21889 1.29918 1.17818 0.90971 0.92650 1.25681 0.96779 0.95892 1.00211 1.70729 1.20519 1.28949 1.35295 0.83586 0.75688 0.75734 0.75386 1.21520 1.21651 1.21501 1.60693 1.03853 1.62754 1.03243 1.22037 0.97493 0.95916 0.90786 1.22599 0.99460 0.95499 0.95203 0.90435 1.22931 0.88602 0.89685 0.96977 0.91982 1.21860 1.01553 0.94441 1.02509 1.89111 1.31175 1.17225 1.91630 1.23088 0.93293 0.85913 0.96333 0.92045 1.21785 0.98903 0.97873 1.01628 1.22514 0.95670 0.93988 1.00253 0.88556 1.21741 0.97230 0.99403 1.01063 0.95402 0.90844 0.94956 0.96292 0.91504 0.92046 0.85706 0.91629 0.95934 0.91208 0.92585 0.91255 0.92407 0.91308 0.91618 0.91465 0.92942 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.39 37.16 0.35 -2.33 16 2 C -0.15 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.20 4.96 1.96 -68.86 -0.13 4.83 16 4 H 0.02 0.61 7.02 -51.93 -0.36 0.25 16 5 C -0.57 -15.36 7.23 -34.44 -0.25 -15.61 16 6 H 0.06 1.54 7.83 -52.48 -0.41 1.13 16 7 C 0.02 0.49 5.25 -17.82 -0.09 0.40 16 8 N -0.92 -27.09 12.87 55.43 0.71 -26.37 16 9 Si 1.07 25.14 29.91 -169.99 -5.08 20.05 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -13.79 6.12 -107.95 -0.66 -14.45 16 14 C 0.07 1.19 3.59 -3.82 -0.01 1.17 16 15 C -0.11 -1.58 2.88 -89.05 -0.26 -1.83 16 16 H 0.08 1.08 7.74 -51.93 -0.40 0.68 16 17 C 0.08 1.03 3.84 -25.95 -0.10 0.93 16 18 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.15 -1.87 8.26 37.16 0.31 -1.56 16 20 O -0.37 -5.61 11.04 -35.23 -0.39 -6.00 16 21 C 0.07 0.94 3.47 -25.96 -0.09 0.85 16 22 H 0.06 0.73 7.83 -51.93 -0.41 0.33 16 23 C -0.14 -1.74 9.52 37.16 0.35 -1.38 16 24 C -0.11 -1.51 2.81 -89.05 -0.25 -1.76 16 25 H 0.10 1.64 7.43 -51.93 -0.39 1.25 16 26 C -0.14 -1.72 8.97 37.16 0.33 -1.38 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.66 6.89 -51.93 -0.36 1.30 16 29 H 0.03 0.59 6.63 -51.93 -0.34 0.24 16 30 H 0.02 0.39 7.50 -51.93 -0.39 0.00 16 31 H 0.07 1.69 6.45 -51.93 -0.33 1.36 16 32 H 0.27 7.92 6.19 -40.82 -0.25 7.66 16 33 H 0.33 6.35 6.63 -39.29 -0.26 6.09 16 34 H 0.07 1.28 7.79 -51.93 -0.40 0.88 16 35 H 0.02 0.39 5.56 -51.93 -0.29 0.10 16 36 H 0.07 0.83 7.42 -51.93 -0.39 0.44 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.98 7.17 -51.93 -0.37 0.61 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -28.74 333.18 -8.35 -37.09 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.96 Total: 5.88 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 0.01 Total: -21.22 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.05 Total: -40.82 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.39 Total: -6.00 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.74 -8.35 -37.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701056243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.696 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds