Wall clock time and date at job start Mon Mar 30 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 H 1.08998 * 109.47606 * 305.45438 * 3 2 1 5 5 C 1.50705 * 109.47179 * 185.44673 * 3 2 1 6 6 H 1.07995 * 120.00282 * 240.00214 * 5 3 2 7 7 C 1.37872 * 119.99374 * 60.00372 * 5 3 2 8 8 N 1.31515 * 120.00636 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99779 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47057 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.47009 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47114 * 300.00166 * 9 7 5 13 13 N 1.46907 * 109.47227 * 65.45392 * 3 2 1 14 14 C 1.46894 * 111.00069 * 193.51487 * 13 3 2 15 15 C 1.46900 * 111.00145 * 69.55738 * 13 3 2 16 16 C 1.52993 * 109.47361 * 199.33758 * 15 13 3 17 17 H 1.09000 * 109.47117 * 305.00297 * 16 15 13 18 18 O 1.42899 * 109.47461 * 65.00196 * 16 15 13 19 19 C 1.42904 * 113.99899 * 270.00510 * 18 16 15 20 20 C 1.53006 * 109.47485 * 185.00188 * 16 15 13 21 21 C 1.53781 * 113.61740 * 179.97438 * 20 16 15 22 22 C 1.53783 * 87.07945 * 139.97963 * 21 20 16 23 23 C 1.53780 * 87.17385 * 334.52561 * 22 21 20 24 24 H 1.09006 * 109.47161 * 294.37832 * 1 2 3 25 25 H 1.09005 * 109.47280 * 54.37645 * 1 2 3 26 26 H 1.09003 * 109.47422 * 174.38184 * 1 2 3 27 27 H 1.09000 * 109.47055 * 240.00527 * 2 1 3 28 28 H 1.08998 * 109.47501 * 120.00462 * 2 1 3 29 29 H 0.97001 * 120.00449 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.47360 * 296.04419 * 14 13 3 31 31 H 1.08999 * 109.46968 * 56.04832 * 14 13 3 32 32 H 1.09002 * 109.46903 * 176.03993 * 14 13 3 33 33 H 1.08998 * 109.47010 * 79.33532 * 15 13 3 34 34 H 1.09006 * 109.47439 * 319.33840 * 15 13 3 35 35 H 1.09001 * 109.47149 * 180.02562 * 19 18 16 36 36 H 1.09003 * 109.46806 * 299.99595 * 19 18 16 37 37 H 1.09002 * 109.47343 * 59.99561 * 19 18 16 38 38 H 1.08997 * 112.84370 * 48.80268 * 20 16 15 39 39 H 1.09001 * 113.61070 * 25.43503 * 21 20 16 40 40 H 1.08994 * 113.61369 * 254.53266 * 21 20 16 41 41 H 1.08997 * 113.61115 * 89.12015 * 22 21 20 42 42 H 1.08993 * 113.61111 * 219.93454 * 22 21 20 43 43 H 1.08999 * 113.61215 * 140.02294 * 23 22 21 44 44 H 1.09005 * 113.61768 * 270.92508 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9838 -0.8371 5 6 3.5410 1.4447 -0.1349 6 1 4.1520 1.8872 0.6379 7 6 4.1341 0.8817 -1.2449 8 7 3.3900 0.3433 -2.1863 9 14 5.9946 0.8850 -1.4125 10 1 6.5956 0.1480 -0.2720 11 1 6.3780 0.2249 -2.6864 12 1 6.4891 2.2852 -1.4128 13 7 1.6607 2.0960 1.2599 14 6 1.8431 3.5510 1.1739 15 6 2.4138 1.5369 2.3905 16 6 1.6889 1.8636 3.6976 17 1 1.5345 2.9403 3.7681 18 8 0.4243 1.1986 3.7200 19 6 -0.6452 1.9647 3.1621 20 6 2.5347 1.3910 4.8818 21 6 1.8920 1.6743 6.2499 22 6 2.3994 0.2899 6.6868 23 6 2.3669 -0.1067 5.2013 24 1 -0.3634 0.4242 0.9361 25 1 -0.3634 0.5986 -0.8354 26 1 -0.3634 -1.0227 -0.1006 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8074 -0.0531 -2.9671 30 1 2.9003 3.7772 1.0355 31 1 1.2748 3.9391 0.3286 32 1 1.4893 4.0165 2.0938 33 1 3.4135 1.9708 2.4112 34 1 2.4894 0.4554 2.2774 35 1 -1.5704 1.3909 3.2170 36 1 -0.7594 2.8920 3.7237 37 1 -0.4218 2.1959 2.1206 38 1 3.5745 1.7108 4.8135 39 1 0.8052 1.7497 6.2144 40 1 2.3573 2.4998 6.7883 41 1 3.4027 0.3069 7.1124 42 1 1.6882 -0.2617 7.3016 43 1 3.2154 -0.7179 4.8940 44 1 1.4097 -0.5172 4.8797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701422813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:48 Heat of formation + Delta-G solvation = -42.325834 kcal Electronic energy + Delta-G solvation = -20933.231557 eV Core-core repulsion = 18078.751726 eV Total energy + Delta-G solvation = -2854.479831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.57727 -38.76681 -37.35521 -34.73237 -33.13022 -31.08395 -28.76900 -27.24764 -26.80253 -26.26392 -25.44596 -23.64311 -22.19279 -20.81929 -20.05807 -18.37146 -17.48713 -17.00605 -16.69871 -16.23741 -15.93130 -15.63505 -15.16479 -14.81974 -14.36287 -14.15934 -13.89151 -13.48325 -13.35025 -13.18374 -13.12359 -13.01034 -12.88252 -12.70842 -12.49521 -12.37487 -12.13351 -12.02620 -11.75457 -11.50006 -11.33799 -11.22402 -11.09060 -11.00779 -10.80173 -10.41277 -10.19075 -8.83047 -8.01920 -6.25139 1.36373 1.37381 1.44323 2.39272 3.10134 3.15646 3.37434 3.80022 3.91977 4.02719 4.08149 4.39329 4.45413 4.49044 4.65073 4.67294 4.73287 4.78247 4.81207 4.89337 4.90309 4.94200 4.97426 5.02789 5.06494 5.10833 5.14582 5.19246 5.22320 5.29132 5.35616 5.46412 5.48182 5.54807 5.65351 5.74929 5.80510 6.07923 6.19757 6.38972 6.56538 6.71843 6.95977 7.45554 8.92094 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.007007 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.978906 B = 3995.050799 C = 4588.483150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.551 4.551 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.526 5.526 14 C 0.034 3.966 15 C 0.056 3.944 16 C 0.115 3.885 17 H 0.059 0.941 18 O -0.385 6.385 19 C 0.028 3.972 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.132 4.132 23 C -0.133 4.133 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.025 0.975 29 H 0.261 0.739 30 H 0.008 0.992 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.021 0.979 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 3.056 14.273 15.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C 0.114 3.886 4 H 0.021 0.979 5 C -0.590 4.590 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.249 5.249 14 C -0.115 4.115 15 C -0.073 4.073 16 C 0.056 3.944 17 H 0.077 0.923 18 O -0.304 6.304 19 C -0.069 4.069 20 C -0.137 4.137 21 C -0.159 4.159 22 C -0.169 4.169 23 C -0.170 4.170 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.903 2.693 14.237 15.296 hybrid contribution 2.073 0.294 -1.133 2.380 sum -2.830 2.987 13.104 13.735 Atomic orbital electron populations 1.21583 0.96358 0.99354 1.00889 1.21368 0.94495 0.98311 0.99688 1.19065 0.91731 0.91507 0.86328 0.97858 1.21979 0.94202 1.37810 1.05048 0.93290 1.25596 1.01587 0.95003 0.95638 1.69995 1.36221 1.39063 1.09704 0.85849 0.81704 0.78167 0.77335 1.19991 1.20892 1.20062 1.62424 1.54811 1.03357 1.04317 1.22243 0.98582 0.89471 1.01161 1.22396 0.94209 0.99634 0.91041 1.21864 0.84360 0.95427 0.92717 0.92301 1.87761 1.16791 1.43946 1.81883 1.22930 0.89398 0.95315 0.99212 1.22789 0.98955 0.98002 0.93913 1.22803 1.00702 0.97709 0.94657 1.22765 1.01761 0.96817 0.95594 1.22823 1.01711 0.95484 0.97025 0.91958 0.94902 0.94243 0.92310 0.95630 0.92979 0.97286 0.92748 0.90893 0.96058 0.92696 0.89984 0.94229 0.92377 0.88531 0.90205 0.90644 0.89518 0.90969 0.92764 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 9.74 71.98 0.70 -4.41 16 2 C -0.10 -4.88 5.24 30.59 0.16 -4.72 16 3 C 0.22 10.99 1.68 44.17 0.07 11.06 16 4 H 0.00 0.20 7.95 -2.39 -0.02 0.18 16 5 C -0.55 -29.81 7.29 25.60 0.19 -29.62 16 6 H 0.05 2.65 6.08 -2.91 -0.02 2.63 16 7 C 0.02 1.19 5.29 84.65 0.45 1.64 16 8 N -0.91 -52.32 11.29 21.45 0.24 -52.08 16 9 Si 0.94 43.76 29.54 68.60 2.03 45.79 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 N -0.53 -21.45 2.20 -901.48 -1.98 -23.43 16 14 C 0.03 1.26 9.06 127.69 1.16 2.41 16 15 C 0.06 2.17 3.57 86.30 0.31 2.48 16 16 C 0.11 3.53 2.33 30.59 0.07 3.60 16 17 H 0.06 1.72 6.41 -2.39 -0.02 1.70 16 18 O -0.38 -12.15 8.46 -148.98 -1.26 -13.41 16 19 C 0.03 0.77 10.21 113.37 1.16 1.93 16 20 C -0.12 -3.12 3.59 -10.17 -0.04 -3.16 16 21 C -0.12 -2.60 7.54 31.12 0.23 -2.36 16 22 C -0.13 -2.72 8.07 31.12 0.25 -2.47 16 23 C -0.13 -3.54 7.50 31.21 0.23 -3.30 16 24 H 0.06 2.39 6.55 -2.38 -0.02 2.38 16 25 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 3.24 5.94 -2.39 -0.01 3.23 16 28 H 0.02 1.25 6.26 -2.39 -0.01 1.24 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.01 0.35 7.44 -2.39 -0.02 0.33 16 31 H 0.05 1.99 8.02 -2.39 -0.02 1.97 16 32 H 0.07 2.21 6.78 -2.39 -0.02 2.19 16 33 H 0.02 0.88 6.70 -2.39 -0.02 0.86 16 34 H 0.05 2.42 6.04 -2.38 -0.01 2.41 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.04 0.94 8.09 -2.39 -0.02 0.92 16 37 H 0.06 1.84 5.31 -2.39 -0.01 1.83 16 38 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.08 1.79 7.78 -2.39 -0.02 1.77 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.08 2.33 6.98 -2.38 -0.02 2.32 16 Total: -1.00 -58.31 329.68 4.92 -53.39 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.95 Total: 16.67 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 4.95 Total: -26.93 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.74 Total: -75.51 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -1.26 Total: -13.41 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -58.31 4.92 -53.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701422813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.067 kcal (2) G-P(sol) polarization free energy of solvation -58.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds