Wall clock time and date at job start Mon Mar 30 2020 06:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47540 * 2 1 4 4 H 1.09000 * 109.46887 * 57.92986 * 3 2 1 5 5 C 1.50703 * 109.46952 * 177.92725 * 3 2 1 6 6 H 1.07996 * 119.99832 * 115.08048 * 5 3 2 7 7 C 1.37877 * 120.00191 * 295.07750 * 5 3 2 8 8 N 1.31507 * 120.00442 * 179.97438 * 7 5 3 9 9 Si 1.86808 * 119.99853 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47173 * 90.00069 * 9 7 5 11 11 H 1.48499 * 109.47052 * 209.99888 * 9 7 5 12 12 H 1.48503 * 109.46790 * 329.99750 * 9 7 5 13 13 N 1.46901 * 109.47122 * 297.92775 * 3 2 1 14 14 C 1.46856 * 110.99729 * 303.09327 * 13 3 2 15 15 C 1.53036 * 109.51855 * 174.16278 * 14 13 3 16 16 C 1.53005 * 109.50028 * 179.12016 * 15 14 13 17 17 C 1.52996 * 109.50130 * 299.19680 * 15 14 13 18 18 C 1.53121 * 109.28072 * 59.17584 * 15 14 13 19 19 C 1.53119 * 109.16182 * 302.34729 * 18 15 14 20 20 C 1.46843 * 110.99704 * 178.88549 * 13 3 2 21 21 H 1.08997 * 109.46709 * 65.82100 * 20 13 3 22 22 C 1.53000 * 109.46050 * 305.85165 * 20 13 3 23 23 O 1.42897 * 109.47392 * 297.03412 * 22 20 13 24 24 H 1.09006 * 109.46867 * 55.18205 * 1 2 3 25 25 H 1.09006 * 109.47017 * 295.19351 * 1 2 3 26 26 H 1.08998 * 109.47616 * 175.18555 * 1 2 3 27 27 H 1.09003 * 109.46927 * 120.00418 * 2 1 3 28 28 H 1.09006 * 109.46643 * 239.99570 * 2 1 3 29 29 H 0.96994 * 120.00590 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.45939 * 294.17279 * 14 13 3 31 31 H 1.09000 * 109.46216 * 54.14563 * 14 13 3 32 32 H 1.08994 * 109.46961 * 60.00177 * 16 15 14 33 33 H 1.08999 * 109.46563 * 179.97438 * 16 15 14 34 34 H 1.08995 * 109.46731 * 299.99794 * 16 15 14 35 35 H 1.09000 * 109.47285 * 60.00448 * 17 15 14 36 36 H 1.09003 * 109.47368 * 180.02562 * 17 15 14 37 37 H 1.09006 * 109.47272 * 299.99922 * 17 15 14 38 38 H 1.09000 * 109.52053 * 62.25127 * 18 15 14 39 39 H 1.08998 * 109.51982 * 182.37201 * 18 15 14 40 40 H 1.08997 * 109.49984 * 177.59291 * 19 18 15 41 41 H 1.08997 * 109.50051 * 297.67234 * 19 18 15 42 42 H 1.08994 * 109.47466 * 57.04121 * 22 20 13 43 43 H 1.09008 * 109.47044 * 177.03906 * 22 20 13 44 44 H 0.96699 * 114.00710 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6468 1.9669 0.8709 5 6 3.5462 1.4426 0.0514 6 1 4.1149 1.8289 -0.7815 7 6 4.1982 0.9497 1.1618 8 7 5.5125 0.9493 1.2065 9 14 3.2146 0.2809 2.6022 10 1 2.9743 -1.1713 2.4059 11 1 3.9744 0.4913 3.8607 12 1 1.9131 0.9913 2.6851 13 7 1.5918 2.1204 -1.2237 14 6 2.0425 1.3984 -2.4205 15 6 1.4379 2.0479 -3.6674 16 6 1.9252 1.3089 -4.9154 17 6 -0.0884 1.9733 -3.5930 18 6 1.8761 3.5134 -3.7371 19 6 1.4369 4.2307 -2.4577 20 6 2.0416 3.5180 -1.2458 21 1 3.1291 3.5486 -1.3118 22 6 1.5889 4.2196 0.0363 23 8 0.1611 4.2401 0.0895 24 1 -0.3633 0.5868 -0.8437 25 1 -0.3633 0.4375 0.9300 26 1 -0.3634 -1.0240 -0.0862 27 1 1.8933 -0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 5.9712 0.6029 1.9877 30 1 3.1301 1.4390 -2.4810 31 1 1.7207 0.3588 -2.3601 32 1 1.6159 0.2651 -4.8635 33 1 1.4939 1.7716 -5.8031 34 1 3.0125 1.3636 -4.9685 35 1 -0.4351 2.5011 -2.7045 36 1 -0.5186 2.4356 -4.4815 37 1 -0.3991 0.9298 -3.5402 38 1 2.9610 3.5651 -3.8296 39 1 1.4137 3.9910 -4.6009 40 1 1.7834 5.2638 -2.4825 41 1 0.3495 4.2132 -2.3857 42 1 1.9771 3.6817 0.9012 43 1 1.9675 5.2418 0.0442 44 1 -0.1971 4.6705 0.8778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701629799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:15 Heat of formation + Delta-G solvation = -57.391838 kcal Electronic energy + Delta-G solvation = -21663.145356 eV Core-core repulsion = 18808.012215 eV Total energy + Delta-G solvation = -2855.133142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49317 -36.23660 -35.46485 -32.71421 -32.02956 -30.43643 -27.63174 -27.17495 -26.74451 -24.07737 -23.15551 -22.49488 -20.23066 -19.01296 -18.22794 -16.76533 -16.36532 -15.54186 -14.74026 -14.42985 -14.12250 -13.77036 -13.52348 -13.42386 -12.93850 -12.80287 -12.57456 -12.09885 -11.91387 -11.83257 -11.71574 -11.52068 -11.29795 -11.23601 -10.91900 -10.77854 -10.54280 -10.22955 -10.21297 -9.99340 -9.88145 -9.60397 -9.55770 -9.35815 -9.29668 -8.94778 -8.56438 -6.97359 -6.12069 -4.12031 3.25096 3.35303 3.37528 4.37019 4.82149 4.95867 5.14630 5.21389 5.31815 5.36350 5.62315 5.78895 5.90520 5.94926 5.98182 6.03610 6.04747 6.11163 6.13177 6.24043 6.28526 6.30531 6.36984 6.39045 6.46374 6.51532 6.55011 6.67115 6.75227 6.77452 6.82799 6.86858 6.92413 7.04504 7.10819 7.23595 7.33793 7.61196 8.14120 8.24356 8.31613 8.47383 8.91542 9.52538 11.00769 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.008945 C = 0.008458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.457118 B = 3129.447926 C = 3309.521442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.178 3.822 4 H 0.045 0.955 5 C -0.542 4.542 6 H 0.074 0.926 7 C 0.075 3.925 8 N -0.899 5.899 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.263 1.263 13 N -0.506 5.506 14 C 0.069 3.931 15 C -0.064 4.064 16 C -0.139 4.139 17 C -0.129 4.129 18 C -0.107 4.107 19 C -0.108 4.108 20 C 0.098 3.902 21 H 0.058 0.942 22 C 0.083 3.917 23 O -0.558 6.558 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.029 0.971 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.263 0.737 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 4.191 -6.195 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C 0.070 3.930 4 H 0.062 0.938 5 C -0.581 4.581 6 H 0.092 0.908 7 C -0.128 4.128 8 N -0.537 5.537 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.224 1.224 12 H -0.188 1.188 13 N -0.230 5.230 14 C -0.059 4.059 15 C -0.065 4.065 16 C -0.196 4.196 17 C -0.186 4.186 18 C -0.144 4.144 19 C -0.146 4.146 20 C -0.011 4.011 21 H 0.076 0.924 22 C 0.005 3.995 23 O -0.361 6.361 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.629 3.831 -6.662 12.320 hybrid contribution 0.750 -0.243 1.464 1.662 sum -8.880 3.588 -5.198 10.897 Atomic orbital electron populations 1.21741 0.97310 0.99191 1.01821 1.21931 0.94094 0.99432 1.00456 1.19783 0.93650 0.90259 0.89312 0.93779 1.21673 0.90590 1.41809 1.03991 0.90758 1.24957 0.94591 0.95050 0.98160 1.69914 1.07357 1.46532 1.29887 0.86939 0.80468 0.79800 0.81903 1.20422 1.22441 1.18753 1.62253 1.58300 1.00239 1.02174 1.22012 0.97616 0.97434 0.88837 1.20615 0.96203 0.94799 0.94872 1.21824 1.00794 0.99987 0.97034 1.21764 0.94382 1.01076 1.01396 1.21612 1.00184 0.95209 0.97441 1.21577 1.02070 0.97171 0.93773 1.21424 0.97365 0.89729 0.92616 0.92418 1.22291 0.80660 0.97461 0.99114 1.86577 1.20760 1.82527 1.46267 0.91419 0.94174 0.95161 0.93779 0.92423 0.92755 0.94429 0.91233 0.92940 0.93291 0.93005 0.90575 0.94579 0.93669 0.92729 0.92924 0.93151 0.90504 0.92304 0.94952 0.79390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.84 37.16 0.37 -2.31 16 2 C -0.12 -2.63 4.63 -26.73 -0.12 -2.75 16 3 C 0.18 4.03 0.91 -68.86 -0.06 3.97 16 4 H 0.04 1.07 4.79 -51.93 -0.25 0.82 16 5 C -0.54 -14.41 7.68 -34.44 -0.26 -14.67 16 6 H 0.07 2.17 6.10 -52.49 -0.32 1.85 16 7 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 9 Si 0.88 21.56 24.64 -169.99 -4.19 17.38 16 10 H -0.28 -6.74 6.87 56.52 0.39 -6.36 16 11 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.26 -6.19 6.40 56.52 0.36 -5.83 16 13 N -0.51 -10.03 2.96 -220.13 -0.65 -10.68 16 14 C 0.07 1.31 3.51 -3.83 -0.01 1.30 16 15 C -0.06 -1.00 0.77 -154.43 -0.12 -1.12 16 16 C -0.14 -1.91 8.48 37.16 0.32 -1.59 16 17 C -0.13 -1.92 8.04 37.16 0.30 -1.62 16 18 C -0.11 -1.62 4.79 -26.61 -0.13 -1.75 16 19 C -0.11 -1.74 4.86 -26.65 -0.13 -1.87 16 20 C 0.10 1.85 1.83 -67.72 -0.12 1.73 16 21 H 0.06 1.25 6.83 -51.93 -0.35 0.89 16 22 C 0.08 1.47 6.22 37.16 0.23 1.70 16 23 O -0.56 -9.15 12.77 -35.23 -0.45 -9.60 16 24 H 0.07 1.25 7.53 -51.93 -0.39 0.86 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 1.02 3.92 -51.93 -0.20 0.81 16 28 H 0.06 1.24 6.11 -51.93 -0.32 0.93 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.04 0.81 6.76 -51.93 -0.35 0.46 16 31 H 0.07 1.35 5.88 -51.93 -0.31 1.04 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.26 6.01 -51.93 -0.31 0.95 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.28 6.03 -51.93 -0.31 0.97 16 42 H 0.06 1.18 6.12 -51.93 -0.32 0.87 16 43 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.36 4.30 9.12 45.56 0.42 4.71 16 LS Contribution 314.77 15.07 4.74 4.74 Total: -1.00 -29.07 314.77 -6.48 -35.55 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.86 Total: 5.71 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 0.15 Total: -16.99 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.12 Total: -36.79 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.45 Total: -9.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.19 Total: 17.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.07 -6.48 -35.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701629799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.845 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds