Wall clock time and date at job start Mon Mar 30 2020 07:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46911 * 2 1 4 4 N 1.46904 * 109.46927 * 119.99131 * 2 1 3 5 5 C 1.46899 * 110.99858 * 180.57995 * 4 2 1 6 6 C 1.50697 * 109.47312 * 300.81777 * 5 4 2 7 7 H 1.08004 * 119.99827 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99976 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99663 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99929 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47244 * 60.00385 * 10 8 6 12 12 H 1.48505 * 109.47248 * 300.00001 * 10 8 6 13 13 H 1.48501 * 109.47057 * 180.02562 * 10 8 6 14 14 C 1.46903 * 111.00118 * 304.54091 * 4 2 1 15 15 H 1.09002 * 109.46586 * 323.57583 * 14 4 2 16 16 C 1.52995 * 109.47303 * 83.57744 * 14 4 2 17 17 C 1.53001 * 109.47003 * 179.97438 * 16 14 4 18 18 C 1.52995 * 109.47141 * 300.00171 * 17 16 14 19 19 C 1.53001 * 109.47355 * 59.99694 * 18 17 16 20 20 C 1.52998 * 109.46531 * 203.57953 * 14 4 2 21 21 C 1.52994 * 109.47255 * 299.99433 * 20 14 4 22 22 O 1.42900 * 109.47714 * 60.00199 * 20 14 4 23 23 H 1.08999 * 109.47226 * 310.38253 * 1 2 3 24 24 H 1.09004 * 109.46784 * 70.38261 * 1 2 3 25 25 H 1.09000 * 109.47021 * 190.37816 * 1 2 3 26 26 H 1.08989 * 109.47382 * 239.99541 * 2 1 3 27 27 H 1.09005 * 109.47189 * 184.89248 * 3 2 1 28 28 H 1.09001 * 109.47007 * 304.89005 * 3 2 1 29 29 H 1.08997 * 109.47923 * 64.88824 * 3 2 1 30 30 H 1.09005 * 109.46700 * 180.81423 * 5 4 2 31 31 H 1.09002 * 109.46785 * 60.82408 * 5 4 2 32 32 H 0.96998 * 120.00236 * 359.97438 * 9 8 6 33 33 H 1.08998 * 109.47406 * 299.99888 * 16 14 4 34 34 H 1.08997 * 109.47463 * 59.99855 * 16 14 4 35 35 H 1.09000 * 109.47164 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.47375 * 60.00008 * 17 16 14 37 37 H 1.09007 * 109.47278 * 299.99935 * 18 17 16 38 38 H 1.09000 * 109.47313 * 180.02562 * 18 17 16 39 39 H 1.09004 * 109.46971 * 179.97438 * 19 18 17 40 40 H 1.09003 * 109.46762 * 60.00408 * 19 18 17 41 41 H 1.09000 * 109.47088 * 52.25932 * 21 20 14 42 42 H 1.08999 * 109.47227 * 172.26076 * 21 20 14 43 43 H 1.09007 * 109.47199 * 292.26388 * 21 20 14 44 44 H 0.96698 * 114.00360 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6923 1.1996 5 6 3.4881 -0.6999 1.2405 6 6 4.0213 -1.3912 0.0122 7 1 3.3377 -1.7851 -0.7254 8 6 5.3818 -1.5198 -0.1706 9 7 6.2142 -1.0397 0.7274 10 14 6.0428 -2.3773 -1.6928 11 1 5.5846 -1.6545 -2.9064 12 1 5.5420 -3.7749 -1.7304 13 1 7.5272 -2.3849 -1.6515 14 6 1.4620 -0.0916 2.4187 15 1 1.3823 0.9876 2.2881 16 6 0.0741 -0.6769 2.6868 17 6 -0.5064 -0.0516 3.9568 18 6 0.4130 -0.3560 5.1412 19 6 1.8010 0.2292 4.8731 20 6 2.3813 -0.3955 3.6033 21 6 2.4932 -1.9103 3.7865 22 8 3.6776 0.1512 3.3530 23 1 -0.3633 0.6658 0.7828 24 1 -0.3633 0.3450 -0.9681 25 1 -0.3633 -1.0109 0.1851 26 1 1.8934 -0.5138 -0.8898 27 1 3.1265 1.4438 -0.0876 28 1 1.6068 1.9810 -0.8430 29 1 1.7500 1.9305 0.9305 30 1 3.8239 -1.2311 2.1311 31 1 3.8560 0.3257 1.2689 32 1 5.8710 -0.5947 1.5180 33 1 -0.5808 -0.4604 1.8428 34 1 0.1538 -1.7560 2.8173 35 1 -1.4954 -0.4682 4.1476 36 1 -0.5861 1.0277 3.8268 37 1 0.4927 -1.4353 5.2714 38 1 -0.0008 0.0891 6.0461 39 1 2.4558 0.0127 5.7172 40 1 1.7212 1.3085 4.7431 41 1 2.7755 -2.3709 2.8398 42 1 3.2514 -2.1304 4.5380 43 1 1.5323 -2.3089 4.1122 44 1 4.3141 -0.0043 4.0641 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704217619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:19 Heat of formation + Delta-G solvation = -34.634531 kcal Electronic energy + Delta-G solvation = -21771.483474 eV Core-core repulsion = 18917.337164 eV Total energy + Delta-G solvation = -2854.146311 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.18016 -36.56881 -35.40122 -32.79629 -31.04590 -30.23551 -29.04734 -26.87058 -26.47003 -24.87120 -22.37111 -21.92631 -21.56324 -19.29124 -18.17312 -16.61700 -16.36952 -15.49914 -15.06402 -14.56784 -14.06032 -13.62018 -13.54779 -13.45290 -13.17133 -12.85775 -12.71021 -12.26488 -11.94632 -11.71200 -11.55525 -11.31440 -11.23845 -11.03828 -10.85494 -10.81318 -10.58161 -10.54448 -10.35364 -10.19959 -10.12757 -9.97171 -9.60723 -9.38243 -9.10591 -8.29191 -7.93711 -6.97531 -6.15252 -3.80945 3.51875 3.54036 3.72165 4.56607 4.65204 4.78065 4.92673 5.17849 5.20671 5.42416 5.50761 5.56730 5.59840 5.62167 5.66735 5.73022 5.79641 5.83443 5.97048 6.04812 6.10555 6.13351 6.20417 6.23590 6.27463 6.28760 6.34975 6.39301 6.49763 6.54312 6.66518 6.75147 6.91361 6.99287 7.07257 7.56023 7.70889 8.07249 8.22348 8.32447 8.67708 8.84335 9.14021 9.88464 11.25199 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.008067 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.066708 B = 3470.259267 C = 4088.256787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.085 3.915 3 C -0.177 4.177 4 N -0.520 5.520 5 C 0.178 3.822 6 C -0.591 4.591 7 H 0.048 0.952 8 C 0.014 3.986 9 N -0.921 5.921 10 Si 1.064 2.936 11 H -0.291 1.291 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.097 3.903 15 H 0.042 0.958 16 C -0.131 4.131 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.142 4.142 20 C 0.133 3.867 21 C -0.178 4.178 22 O -0.536 6.536 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.057 0.943 31 H -0.003 1.003 32 H 0.272 0.728 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.933 2.203 7.094 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 C -0.236 4.236 4 N -0.243 5.243 5 C 0.054 3.946 6 C -0.630 4.630 7 H 0.066 0.934 8 C -0.190 4.190 9 N -0.558 5.558 10 Si 0.894 3.106 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.211 1.211 14 C -0.012 4.012 15 H 0.059 0.941 16 C -0.169 4.169 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.180 4.180 20 C 0.092 3.908 21 C -0.235 4.235 22 O -0.342 6.342 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.015 0.985 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.963 1.433 5.736 12.456 hybrid contribution -0.842 1.226 1.391 2.036 sum -11.806 2.659 7.126 14.044 Atomic orbital electron populations 1.22265 0.96936 1.01401 1.00134 1.21526 0.92704 0.92200 0.95939 1.22367 1.02973 0.98414 0.99822 1.62476 1.12374 1.50708 0.98776 1.20349 0.80521 0.96006 0.97742 1.22222 0.93764 1.39802 1.07216 0.93371 1.25614 0.93509 0.97173 1.02674 1.70724 1.37582 1.36451 1.11041 0.83619 0.75987 0.75958 0.75080 1.21829 1.21717 1.21091 1.21517 0.92699 0.96800 0.90178 0.94067 1.22216 0.96182 1.00978 0.97520 1.21572 0.98213 1.00612 0.95409 1.21559 0.94968 1.01188 0.97780 1.22227 0.96988 1.00682 0.98121 1.21111 0.83776 0.92660 0.93271 1.22646 1.00956 0.96210 1.03706 1.87207 1.20758 1.80887 1.45328 0.92926 0.93606 0.91910 0.89318 0.91408 0.93866 0.93800 0.92563 0.98519 0.91753 0.89509 0.91281 0.92251 0.92541 0.91515 0.92544 0.92177 0.91878 0.89007 0.93744 0.92258 0.79575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 7.42 37.16 0.28 -2.10 16 2 C 0.09 1.70 2.72 -67.71 -0.18 1.52 16 3 C -0.18 -3.49 8.48 37.16 0.31 -3.18 16 4 N -0.52 -11.05 4.01 -220.15 -0.88 -11.93 16 5 C 0.18 4.53 1.57 -4.98 -0.01 4.52 16 6 C -0.59 -16.84 8.49 -34.44 -0.29 -17.14 16 7 H 0.05 1.39 6.62 -52.48 -0.35 1.04 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 9 N -0.92 -28.30 13.65 55.43 0.76 -27.54 16 10 Si 1.06 26.01 29.90 -169.99 -5.08 20.93 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.10 1.74 1.14 -67.71 -0.08 1.67 16 15 H 0.04 0.79 5.62 -51.93 -0.29 0.50 16 16 C -0.13 -1.94 4.51 -26.73 -0.12 -2.06 16 17 C -0.12 -1.47 5.92 -26.73 -0.16 -1.62 16 18 C -0.12 -1.40 5.65 -26.73 -0.15 -1.55 16 19 C -0.14 -1.95 5.07 -26.76 -0.14 -2.08 16 20 C 0.13 2.25 0.73 -90.65 -0.07 2.19 16 21 C -0.18 -3.03 7.43 37.15 0.28 -2.76 16 22 O -0.54 -10.49 8.63 -35.23 -0.30 -10.80 16 23 H 0.05 0.78 6.01 -51.93 -0.31 0.46 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.98 7.20 -51.93 -0.37 0.60 16 26 H 0.09 2.00 6.43 -51.94 -0.33 1.66 16 27 H 0.07 1.57 6.69 -51.93 -0.35 1.22 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.83 6.01 -51.93 -0.31 0.52 16 30 H 0.06 1.47 3.59 -51.93 -0.19 1.28 16 31 H 0.00 -0.08 5.36 -51.93 -0.28 -0.36 16 32 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 33 H 0.09 1.24 3.76 -51.93 -0.20 1.05 16 34 H 0.07 1.07 6.61 -51.93 -0.34 0.73 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.79 6.26 -51.93 -0.33 0.47 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.92 5.84 -51.93 -0.30 1.62 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.89 4.85 -51.93 -0.25 0.64 16 44 H 0.36 5.80 9.04 45.56 0.41 6.21 16 LS Contribution 304.35 15.07 4.59 4.59 Total: -1.00 -30.99 304.35 -7.61 -38.60 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.26 Total: 8.45 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -0.42 Total: -22.30 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: -0.13 Total: -39.47 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.30 Total: -10.80 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.08 Total: 20.93 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.99 -7.61 -38.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704217619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.970 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds