Wall clock time and date at job start Mon Mar 30 2020 06:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09003 * 109.47172 * 56.86135 * 3 2 1 5 5 C 1.50695 * 109.47185 * 176.86556 * 3 2 1 6 6 H 1.07998 * 120.00062 * 84.88252 * 5 3 2 7 7 C 1.37881 * 119.99754 * 264.87956 * 5 3 2 8 8 N 1.31515 * 119.99696 * 179.33449 * 7 5 3 9 9 Si 1.86797 * 120.00314 * 359.33343 * 7 5 3 10 10 H 1.48499 * 109.47143 * 267.42043 * 9 7 5 11 11 H 1.48498 * 109.46927 * 27.42160 * 9 7 5 12 12 H 1.48498 * 109.47237 * 147.42144 * 9 7 5 13 13 N 1.46899 * 109.46891 * 296.86448 * 3 2 1 14 14 C 1.46850 * 111.00178 * 299.21093 * 13 3 2 15 15 C 1.53029 * 109.52240 * 174.16267 * 14 13 3 16 16 C 1.53118 * 109.28211 * 59.17893 * 15 14 13 17 17 O 1.42893 * 109.52188 * 62.25023 * 16 15 14 18 18 C 1.53009 * 109.57522 * 182.40631 * 16 15 14 19 19 C 1.52995 * 109.47090 * 304.71689 * 18 16 15 20 20 C 1.53000 * 109.47024 * 64.71690 * 18 16 15 21 21 C 1.53117 * 109.16129 * 302.34356 * 16 15 14 22 22 C 1.46853 * 110.99840 * 174.99928 * 13 3 2 23 23 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 24 24 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 26 26 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 27 27 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 28 28 H 0.96996 * 119.99964 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.45613 * 294.17653 * 14 13 3 30 30 H 1.08993 * 109.46090 * 54.14174 * 14 13 3 31 31 H 1.08997 * 109.50621 * 299.23293 * 15 14 13 32 32 H 1.09004 * 109.50301 * 179.11863 * 15 14 13 33 33 H 0.96706 * 114.00484 * 300.31235 * 17 16 15 34 34 H 1.08996 * 109.46486 * 184.71133 * 18 16 15 35 35 H 1.09000 * 109.46735 * 180.02562 * 19 18 16 36 36 H 1.09004 * 109.46896 * 299.99720 * 19 18 16 37 37 H 1.08989 * 109.47490 * 59.99765 * 19 18 16 38 38 H 1.08999 * 109.47372 * 59.99306 * 20 18 16 39 39 H 1.08996 * 109.47328 * 180.02562 * 20 18 16 40 40 H 1.09004 * 109.46851 * 299.99732 * 20 18 16 41 41 H 1.09005 * 109.50364 * 297.71460 * 21 16 15 42 42 H 1.08995 * 109.50331 * 177.59604 * 21 16 15 43 43 H 1.08998 * 109.46190 * 305.85589 * 22 13 3 44 44 H 1.08994 * 109.46238 * 65.83668 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6314 1.9723 0.8605 5 6 3.5449 1.4432 0.0777 6 1 4.1322 1.3431 -0.8231 7 6 4.1721 1.5718 1.2988 8 7 5.4854 1.5593 1.3681 9 14 3.1566 1.7638 2.8549 10 1 2.9619 3.2073 3.1439 11 1 1.8347 1.1140 2.6665 12 1 3.8658 1.1227 3.9911 13 7 1.6131 2.1127 -1.2355 14 6 2.1613 1.4359 -2.4178 15 6 1.5814 2.0692 -3.6845 16 6 1.9381 3.5580 -3.7143 17 8 3.3582 3.7078 -3.7650 18 6 1.3107 4.2108 -4.9477 19 6 1.7545 3.4589 -6.2041 20 6 -0.2141 4.1572 -4.8332 21 6 1.3975 4.2297 -2.4490 22 6 1.9828 3.5338 -1.2180 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.9266 1.6494 2.2272 29 1 3.2464 1.5387 -2.4245 30 1 1.8970 0.3790 -2.3864 31 1 0.4974 1.9546 -3.6852 32 1 2.0004 1.5770 -4.5621 33 1 3.8224 3.3146 -3.0133 34 1 1.6338 5.2497 -5.0127 35 1 1.3079 3.9243 -7.0828 36 1 2.8408 3.4972 -6.2857 37 1 1.4315 2.4201 -6.1390 38 1 -0.5303 4.6927 -3.9380 39 1 -0.6610 4.6218 -5.7120 40 1 -0.5372 3.1182 -4.7681 41 1 0.3106 4.1492 -2.4302 42 1 1.6852 5.2810 -2.4439 43 1 1.5888 4.0005 -0.3153 44 1 3.0687 3.6267 -1.2306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710661638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:19 Heat of formation + Delta-G solvation = -84.597693 kcal Electronic energy + Delta-G solvation = -21179.368208 eV Core-core repulsion = 18323.055332 eV Total energy + Delta-G solvation = -2856.312876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18508 -38.31146 -35.39536 -34.79116 -33.87662 -31.79102 -30.97959 -28.62329 -27.88206 -25.51877 -24.27349 -24.03226 -21.84322 -20.77058 -19.75376 -18.93819 -17.95524 -17.02935 -16.41483 -16.00000 -15.74254 -15.43307 -15.06665 -14.79466 -14.67240 -14.18869 -13.95397 -13.71595 -13.55295 -13.47264 -13.03066 -12.92852 -12.74166 -12.68936 -12.40531 -12.38055 -12.08459 -11.99688 -11.75504 -11.65405 -11.62280 -11.59478 -11.47780 -11.12892 -10.78827 -10.65530 -10.43940 -8.85198 -8.30341 -6.34173 1.30084 1.34173 1.44279 2.32046 3.03040 3.29133 3.36562 3.78388 3.88863 3.98147 4.25385 4.37382 4.43678 4.49002 4.53686 4.55592 4.60122 4.64764 4.74402 4.76928 4.89620 4.91070 4.97280 5.04664 5.07844 5.09747 5.14729 5.16802 5.26976 5.27517 5.34282 5.39532 5.41417 5.48813 5.54483 5.57209 5.62109 5.70336 6.20859 6.42896 6.55624 6.71038 6.76175 7.35130 8.85780 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.006950 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.537164 B = 4027.992024 C = 4401.962636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 C 0.178 3.822 4 H 0.036 0.964 5 C -0.532 4.532 6 H 0.038 0.962 7 C 0.018 3.982 8 N -0.947 5.947 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.239 1.239 12 H -0.290 1.290 13 N -0.514 5.514 14 C 0.057 3.943 15 C -0.130 4.130 16 C 0.135 3.865 17 O -0.578 6.578 18 C -0.077 4.077 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.132 4.132 22 C 0.059 3.941 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.263 0.737 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.373 0.627 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.359 3.206 -10.202 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C 0.070 3.930 4 H 0.054 0.946 5 C -0.571 4.571 6 H 0.056 0.944 7 C -0.180 4.180 8 N -0.587 5.587 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.162 1.162 12 H -0.217 1.217 13 N -0.237 5.237 14 C -0.072 4.072 15 C -0.168 4.168 16 C 0.095 3.905 17 O -0.386 6.386 18 C -0.096 4.096 19 C -0.200 4.200 20 C -0.201 4.201 21 C -0.170 4.170 22 C -0.069 4.069 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.222 0.778 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -13.891 3.490 -10.668 17.859 hybrid contribution 1.811 -0.234 1.810 2.571 sum -12.080 3.256 -8.857 15.329 Atomic orbital electron populations 1.21643 0.94756 1.00838 1.01814 1.21679 0.96082 0.97098 1.00036 1.19684 0.91284 0.92395 0.89600 0.94649 1.21835 0.92647 1.49107 0.93482 0.94358 1.25835 0.95495 0.94341 1.02328 1.70068 1.10025 1.52391 1.26225 0.85986 0.80443 0.78891 0.79225 1.19910 1.16203 1.21660 1.62455 1.57491 1.01472 1.02306 1.21978 0.95908 0.98745 0.90529 1.22293 1.02643 0.95448 0.96420 1.21373 0.79973 0.94245 0.94949 1.86385 1.19772 1.82122 1.50364 1.21015 0.96301 0.99328 0.92952 1.21809 1.00752 1.00592 0.96801 1.21938 0.92736 1.02831 1.02642 1.22299 1.02390 0.98900 0.93440 1.21863 0.97198 0.89636 0.98226 0.91495 0.92653 0.94042 0.93017 0.94460 0.92833 0.97313 0.91048 0.89031 0.90805 0.77784 0.91565 0.91421 0.93981 0.92058 0.91910 0.91000 0.91799 0.88702 0.91332 0.92251 0.96963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.78 71.98 0.70 -3.51 16 2 C -0.11 -4.38 5.14 30.59 0.16 -4.22 16 3 C 0.18 7.85 1.33 44.17 0.06 7.91 16 4 H 0.04 1.62 5.26 -2.39 -0.01 1.60 16 5 C -0.53 -28.62 7.45 25.60 0.19 -28.43 16 6 H 0.04 2.31 6.36 -2.91 -0.02 2.29 16 7 C 0.02 1.02 5.47 84.66 0.46 1.48 16 8 N -0.95 -58.23 13.96 21.45 0.30 -57.93 16 9 Si 0.93 43.41 26.92 68.60 1.85 45.25 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.24 -10.26 6.64 99.48 0.66 -9.60 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 13 N -0.51 -19.37 4.01 -875.53 -3.51 -22.88 16 14 C 0.06 2.03 4.57 86.32 0.39 2.42 16 15 C -0.13 -3.67 4.34 30.64 0.13 -3.54 16 16 C 0.13 3.83 0.58 -10.71 -0.01 3.82 16 17 O -0.58 -19.97 12.48 -148.98 -1.86 -21.83 16 18 C -0.08 -1.77 2.53 -10.79 -0.03 -1.80 16 19 C -0.14 -3.07 8.61 71.98 0.62 -2.45 16 20 C -0.14 -2.58 8.46 71.98 0.61 -1.97 16 21 C -0.13 -3.85 4.69 30.65 0.14 -3.70 16 22 C 0.06 2.20 4.90 86.33 0.42 2.63 16 23 H 0.07 2.02 7.70 -2.39 -0.02 2.00 16 24 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 2.04 6.14 -2.39 -0.01 2.02 16 27 H 0.04 1.56 7.96 -2.38 -0.02 1.54 16 28 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.01 0.37 5.10 -2.39 -0.01 0.36 16 30 H 0.07 2.55 5.97 -2.39 -0.01 2.53 16 31 H 0.09 2.29 6.46 -2.39 -0.02 2.28 16 32 H 0.07 1.99 6.51 -2.39 -0.02 1.98 16 33 H 0.37 14.04 5.86 -74.05 -0.43 13.60 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.04 1.06 7.82 -2.38 -0.02 1.04 16 37 H 0.06 1.26 6.41 -2.39 -0.02 1.24 16 38 H 0.06 1.11 6.30 -2.39 -0.02 1.10 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.11 6.52 -2.39 -0.02 1.10 16 41 H 0.09 2.43 6.22 -2.38 -0.01 2.41 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 44 H 0.01 0.53 6.15 -2.39 -0.01 0.52 16 Total: -1.00 -61.36 314.03 1.14 -60.23 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.50 Total: 28.54 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 3.86 Total: -31.38 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.22 Total: -80.81 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -1.86 Total: -21.83 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.85 Total: 45.25 kcal Total: -61.36 1.14 -60.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710661638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.370 kcal (2) G-P(sol) polarization free energy of solvation -61.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds