Wall clock time and date at job start Mon Mar 30 2020 06:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47450 * 2 1 4 4 H 1.09001 * 109.46826 * 303.55243 * 3 2 1 5 5 C 1.50699 * 109.47348 * 183.55493 * 3 2 1 6 6 H 1.08000 * 120.00359 * 239.99779 * 5 3 2 7 7 C 1.37879 * 119.99865 * 59.99921 * 5 3 2 8 8 N 1.31513 * 120.00051 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99919 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47388 * 89.99734 * 9 7 5 11 11 H 1.48506 * 109.47120 * 209.99819 * 9 7 5 12 12 H 1.48502 * 109.46850 * 329.99678 * 9 7 5 13 13 N 1.46903 * 109.47215 * 63.55220 * 3 2 1 14 14 C 1.46894 * 110.99922 * 208.74523 * 13 3 2 15 15 H 1.08999 * 110.45861 * 316.14794 * 14 13 3 16 16 C 1.54481 * 110.51384 * 78.75116 * 14 13 3 17 17 O 1.44426 * 104.80410 * 142.62026 * 16 14 13 18 18 C 1.44424 * 105.27545 * 319.48892 * 17 16 14 19 19 C 1.54511 * 110.51091 * 193.54005 * 14 13 3 20 20 H 1.09007 * 110.51307 * 122.71075 * 19 14 13 21 21 C 1.52997 * 110.50939 * 0.02562 * 19 14 13 22 22 C 1.53003 * 109.46990 * 176.03579 * 21 19 14 23 23 C 1.53009 * 109.46969 * 174.16304 * 22 21 19 24 24 C 1.53001 * 109.46976 * 294.16422 * 22 21 19 25 25 H 1.09001 * 109.47634 * 184.91213 * 1 2 3 26 26 H 1.08998 * 109.46815 * 304.91119 * 1 2 3 27 27 H 1.09002 * 109.47446 * 64.90314 * 1 2 3 28 28 H 1.09000 * 109.47190 * 239.99817 * 2 1 3 29 29 H 1.09001 * 109.47198 * 120.00133 * 2 1 3 30 30 H 0.97005 * 119.99781 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99488 * 84.79275 * 13 3 2 32 32 H 1.09001 * 110.37304 * 261.45463 * 16 14 13 33 33 H 1.09003 * 110.37071 * 23.68252 * 16 14 13 34 34 H 1.08997 * 110.37130 * 159.34068 * 18 17 16 35 35 H 1.08996 * 110.37235 * 281.67783 * 18 17 16 36 36 H 1.09001 * 109.47125 * 296.03282 * 21 19 14 37 37 H 1.08996 * 109.47677 * 56.03200 * 21 19 14 38 38 H 1.08994 * 109.47404 * 54.16571 * 22 21 19 39 39 H 1.09003 * 109.46807 * 64.95088 * 23 22 21 40 40 H 1.08999 * 109.46903 * 184.94591 * 23 22 21 41 41 H 1.08995 * 109.47306 * 304.94732 * 23 22 21 42 42 H 1.08994 * 109.47507 * 59.99852 * 24 22 21 43 43 H 1.09000 * 109.47051 * 180.02562 * 24 22 21 44 44 H 1.09001 * 109.46799 * 299.99731 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6257 1.9743 -0.8565 5 6 3.5445 1.4433 -0.0881 6 1 4.1312 1.8945 0.6984 7 6 4.1718 0.8682 -1.1728 8 7 3.4574 0.3184 -2.1304 9 14 6.0366 0.8686 -1.2817 10 1 6.5705 -0.3580 -0.6371 11 1 6.4492 0.8980 -2.7080 12 1 6.5727 2.0664 -0.5866 13 7 1.6217 2.1098 1.2400 14 6 1.4614 3.5550 1.0318 15 1 2.2917 3.9501 0.4466 16 6 0.1163 3.8554 0.3340 17 8 -0.3502 5.0791 0.9431 18 6 -0.0445 4.9454 2.3482 19 6 1.3569 4.2890 2.3874 20 1 2.1342 5.0486 2.4714 21 6 1.4520 3.2931 3.5450 22 6 1.4455 4.0527 4.8731 23 6 1.3938 3.0543 6.0314 24 6 2.7165 4.8972 4.9839 25 1 -0.3634 -1.0239 0.0880 26 1 -0.3633 0.5881 0.8427 27 1 -0.3634 0.4359 -0.9306 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8988 -0.0859 -2.8937 31 1 2.2719 1.9222 1.9886 32 1 0.2673 3.9977 -0.7360 33 1 -0.5926 3.0468 0.5123 34 1 -0.0169 5.9249 2.8255 35 1 -0.7786 4.3048 2.8370 36 1 0.6003 2.6138 3.5107 37 1 2.3761 2.7218 3.4578 38 1 0.5721 4.7035 4.9152 39 1 2.3088 2.4620 6.0416 40 1 1.3005 3.5950 6.9732 41 1 0.5353 2.3947 5.9045 42 1 2.7534 5.6084 4.1588 43 1 2.7120 5.4380 5.9303 44 1 3.5899 4.2463 4.9419 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716293730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:59 Heat of formation + Delta-G solvation = -69.769342 kcal Electronic energy + Delta-G solvation = -20539.606058 eV Core-core repulsion = 17683.936188 eV Total energy + Delta-G solvation = -2855.669870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.53100 -36.26896 -35.81545 -32.80575 -31.47392 -30.06492 -27.82890 -27.13324 -25.77315 -25.61127 -22.98460 -22.13723 -20.12597 -19.51826 -18.79943 -16.66853 -16.13283 -15.58312 -15.03149 -14.75442 -14.49936 -14.19821 -13.93373 -13.44258 -13.18315 -12.84548 -12.59286 -12.35419 -12.18990 -11.69913 -11.52492 -11.45011 -11.28471 -11.10841 -11.00995 -10.85808 -10.78637 -10.54253 -10.37997 -10.24010 -10.05437 -10.00130 -9.60035 -9.45067 -9.37667 -9.04193 -8.40035 -7.31416 -6.02741 -4.15519 3.24542 3.32104 3.34238 4.36159 4.37649 4.83153 4.92771 4.99840 5.17518 5.20251 5.23190 5.33709 5.47947 5.63288 5.68923 5.77496 5.83071 5.85925 5.96652 5.97234 6.05674 6.14888 6.15371 6.26551 6.33104 6.38958 6.40574 6.49757 6.51254 6.62570 6.68085 6.70923 7.04668 7.15432 7.21043 7.44103 7.58402 7.75499 8.06810 8.11052 8.30562 8.62296 8.96996 9.52300 10.97680 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.006632 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.394844 B = 4221.020962 C = 4754.720593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.213 3.787 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.679 5.679 14 C 0.066 3.934 15 H 0.054 0.946 16 C 0.056 3.944 17 O -0.386 6.386 18 C 0.056 3.944 19 C -0.122 4.122 20 H 0.077 0.923 21 C -0.097 4.097 22 C -0.099 4.099 23 C -0.146 4.146 24 C -0.149 4.149 25 H 0.024 0.976 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.334 0.666 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 6.082 11.238 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C 0.105 3.895 4 H 0.049 0.951 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.312 5.312 14 C -0.046 4.046 15 H 0.072 0.928 16 C -0.021 4.021 17 O -0.304 6.304 18 C -0.021 4.021 19 C -0.141 4.141 20 H 0.095 0.905 21 C -0.135 4.135 22 C -0.118 4.118 23 C -0.203 4.203 24 C -0.206 4.206 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.154 0.846 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.440 6.028 10.847 13.549 hybrid contribution 2.235 0.028 -0.193 2.243 sum -3.206 6.057 10.654 12.667 Atomic orbital electron populations 1.21732 0.99082 0.98522 1.00310 1.21481 0.91993 0.99222 1.01635 1.19172 0.92608 0.91208 0.86515 0.95079 1.21835 0.92607 1.37917 1.06095 0.92951 1.24921 0.97954 0.94974 0.95596 1.69875 1.34933 1.37741 1.09655 0.86669 0.86143 0.78368 0.77243 1.20649 1.21183 1.20105 1.61125 1.53785 1.05877 1.10425 1.22650 0.96974 0.90988 0.93971 0.92837 1.23509 0.94947 0.86129 0.97501 1.89050 1.82504 1.38944 1.19950 1.23444 0.95031 1.00042 0.83613 1.22731 0.97645 0.97968 0.95730 0.90466 1.21558 1.03247 0.97181 0.91522 1.21180 0.98159 0.97030 0.95402 1.21829 1.01964 0.99043 0.97493 1.21896 0.97778 0.99879 1.01062 0.95677 0.93088 0.94621 0.89277 0.95138 0.92859 0.84624 0.89847 0.91412 0.90274 0.92475 0.90577 0.91316 0.91624 0.92685 0.93291 0.92647 0.92538 0.93321 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.85 37.16 0.37 -2.42 16 2 C -0.10 -2.44 5.44 -26.73 -0.15 -2.59 16 3 C 0.21 5.05 1.84 -68.86 -0.13 4.93 16 4 H 0.03 0.82 7.41 -51.93 -0.38 0.44 16 5 C -0.55 -14.34 8.46 -34.44 -0.29 -14.63 16 6 H 0.05 1.37 7.68 -52.49 -0.40 0.97 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.64 11.30 55.43 0.63 -24.01 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -13.31 4.61 -99.31 -0.46 -13.77 16 14 C 0.07 1.19 3.24 -66.15 -0.21 0.98 16 15 H 0.05 1.12 7.95 -51.93 -0.41 0.70 16 16 C 0.06 1.00 6.77 37.93 0.26 1.26 16 17 O -0.39 -6.65 11.65 -35.23 -0.41 -7.06 16 18 C 0.06 0.79 6.39 38.10 0.24 1.03 16 19 C -0.12 -1.78 3.00 -88.88 -0.27 -2.05 16 20 H 0.08 1.11 6.40 -51.93 -0.33 0.78 16 21 C -0.10 -1.29 2.96 -26.73 -0.08 -1.36 16 22 C -0.10 -1.09 2.85 -90.61 -0.26 -1.34 16 23 C -0.15 -1.48 9.19 37.16 0.34 -1.14 16 24 C -0.15 -1.59 8.98 37.16 0.33 -1.25 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.98 7.57 -51.93 -0.39 0.58 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 2.34 5.98 -51.93 -0.31 2.03 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.33 6.49 5.68 -39.29 -0.22 6.26 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.77 7.78 -51.93 -0.40 0.37 16 36 H 0.08 1.07 7.86 -51.93 -0.41 0.66 16 37 H 0.07 0.99 6.45 -51.93 -0.33 0.66 16 38 H 0.07 0.69 7.45 -51.93 -0.39 0.30 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.62 6.48 -51.93 -0.34 0.28 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -26.80 335.17 -8.26 -35.06 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -8.11 Total: 5.67 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 0.06 Total: -16.85 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.17 Total: -37.78 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.41 Total: -7.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.80 -8.26 -35.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716293730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.706 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds