Wall clock time and date at job start Mon Mar 30 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47553 * 2 1 4 4 H 1.09001 * 109.46632 * 56.07664 * 3 2 1 5 5 N 1.46898 * 109.46833 * 296.08149 * 3 2 1 6 6 C 1.46902 * 110.99804 * 154.29516 * 5 3 2 7 7 H 1.09002 * 109.47044 * 35.94106 * 6 5 3 8 8 C 1.52999 * 109.46753 * 275.94287 * 6 5 3 9 9 C 1.52995 * 109.47292 * 155.94198 * 6 5 3 10 10 C 1.50700 * 109.47100 * 294.99922 * 9 6 5 11 11 H 1.08000 * 119.99852 * 359.97438 * 10 9 6 12 12 C 1.37887 * 119.99929 * 179.72185 * 10 9 6 13 13 N 1.31513 * 119.99973 * 0.27509 * 12 10 9 14 14 Si 1.86799 * 119.99801 * 180.27476 * 12 10 9 15 15 H 1.48493 * 109.47039 * 90.00243 * 14 12 10 16 16 H 1.48499 * 109.46700 * 210.00042 * 14 12 10 17 17 H 1.48496 * 109.47248 * 329.99846 * 14 12 10 18 18 C 1.53003 * 109.47322 * 176.07628 * 3 2 1 19 19 H 1.09000 * 109.52053 * 179.87690 * 18 3 2 20 20 C 1.53173 * 109.52186 * 300.00226 * 18 3 2 21 21 C 1.53186 * 109.03558 * 176.88643 * 20 18 3 22 22 C 1.53093 * 109.16045 * 303.01690 * 21 20 18 23 23 O 1.42909 * 109.41457 * 57.60958 * 22 21 20 24 24 C 1.42902 * 114.09604 * 298.84369 * 23 22 21 25 25 H 1.09001 * 109.47418 * 185.05975 * 1 2 3 26 26 H 1.08998 * 109.47519 * 305.06590 * 1 2 3 27 27 H 1.09005 * 109.46839 * 65.06115 * 1 2 3 28 28 H 1.08998 * 109.47220 * 239.99596 * 2 1 3 29 29 H 1.09003 * 109.46908 * 120.00108 * 2 1 3 30 30 H 1.00897 * 110.99926 * 278.24239 * 5 3 2 31 31 H 1.09007 * 109.46801 * 184.95833 * 8 6 5 32 32 H 1.09000 * 109.47319 * 304.95862 * 8 6 5 33 33 H 1.08992 * 109.47487 * 64.96400 * 8 6 5 34 34 H 1.08995 * 109.47197 * 174.99648 * 9 6 5 35 35 H 1.09004 * 109.46968 * 54.99406 * 9 6 5 36 36 H 0.96991 * 119.99828 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.54535 * 296.75271 * 20 18 3 38 38 H 1.08998 * 109.54617 * 56.93000 * 20 18 3 39 39 H 1.09001 * 109.52011 * 62.92386 * 21 20 18 40 40 H 1.09003 * 109.51915 * 183.04958 * 21 20 18 41 41 H 1.09002 * 109.47910 * 177.58591 * 22 21 20 42 42 H 1.08994 * 109.48166 * 297.61424 * 22 21 20 43 43 H 1.09008 * 109.47960 * 301.17223 * 24 23 22 44 44 H 1.09005 * 109.48025 * 181.14329 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6204 1.9762 0.8528 5 7 1.6292 2.1071 -1.2440 6 6 1.5374 3.5614 -1.0583 7 1 2.3226 3.8911 -0.3779 8 6 0.1704 3.9150 -0.4690 9 6 1.7066 4.2597 -2.4090 10 6 3.0980 4.0116 -2.9320 11 1 3.7923 3.4158 -2.3580 12 6 3.4830 4.5409 -4.1456 13 7 2.6376 5.2668 -4.8442 14 14 5.2052 4.2270 -4.7973 15 1 5.2058 2.9895 -5.6181 16 1 5.6348 5.3761 -5.6341 17 1 6.1439 4.0659 -3.6581 18 6 3.5669 1.4436 0.0987 19 1 3.9313 2.4708 0.0966 20 6 3.9964 0.7507 1.3955 21 6 5.5262 0.6887 1.4458 22 6 6.0408 -0.0383 0.2006 23 8 5.5799 0.6398 -0.9699 24 6 4.1571 0.6874 -1.0944 25 1 -0.3634 -1.0236 0.0906 26 1 -0.3634 0.5904 0.8411 27 1 -0.3633 0.4333 -0.9319 28 1 1.8932 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 2.2563 1.8781 -2.0004 31 1 0.0682 4.9988 -0.4132 32 1 -0.6157 3.5081 -1.1051 33 1 0.0849 3.4901 0.5310 34 1 1.5504 5.3314 -2.2861 35 1 0.9770 3.8648 -3.1161 36 1 2.9085 5.6394 -5.6977 37 1 3.6262 1.3159 2.2508 38 1 3.5882 -0.2596 1.4217 39 1 5.9311 1.7004 1.4703 40 1 5.8397 0.1491 2.3394 41 1 7.1307 -0.0478 0.2097 42 1 5.6683 -1.0626 0.1978 43 1 3.7598 -0.3274 -1.1142 44 1 3.8900 1.2006 -2.0182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723999496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:31 Heat of formation + Delta-G solvation = -78.460918 kcal Electronic energy + Delta-G solvation = -20782.712678 eV Core-core repulsion = 17926.665912 eV Total energy + Delta-G solvation = -2856.046765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.73161 -37.17677 -34.51468 -32.87908 -32.18366 -30.86794 -28.80237 -27.37258 -25.14058 -24.84984 -23.03294 -22.70504 -20.99269 -19.43680 -18.90202 -16.45588 -16.09298 -15.89356 -15.01220 -14.84631 -14.61951 -14.50573 -13.92146 -13.82980 -13.45586 -12.90254 -12.74663 -12.48381 -11.92428 -11.82325 -11.64871 -11.60940 -11.27857 -11.22228 -11.13372 -10.95673 -10.76946 -10.68131 -10.43269 -10.31437 -10.18590 -10.10783 -9.96867 -9.19395 -9.14533 -9.01386 -8.35338 -7.57190 -5.98998 -4.01925 3.35053 3.41624 3.48140 4.07434 4.48600 4.76816 4.86513 4.88844 4.99780 5.12525 5.28271 5.34047 5.38529 5.44806 5.56526 5.60058 5.68122 5.81658 5.83379 5.94282 5.96994 6.00533 6.03886 6.13376 6.17371 6.22989 6.26903 6.28344 6.39293 6.47300 6.60203 6.65106 6.70479 6.96136 6.98557 7.42314 7.57262 7.68669 8.00679 8.09560 8.30694 8.41128 9.04887 9.63044 11.11760 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.008670 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.134184 B = 3228.657907 C = 4549.998937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.095 3.905 4 H 0.071 0.929 5 N -0.675 5.675 6 C 0.088 3.912 7 H 0.028 0.972 8 C -0.135 4.135 9 C 0.020 3.980 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.885 3.115 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.272 1.272 18 C -0.151 4.151 19 H 0.081 0.919 20 C -0.115 4.115 21 C -0.156 4.156 22 C 0.060 3.940 23 O -0.379 6.379 24 C 0.062 3.938 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.353 0.647 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.020 0.980 35 H 0.025 0.975 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 -10.848 12.240 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.016 4.016 4 H 0.089 0.911 5 N -0.309 5.309 6 C -0.022 4.022 7 H 0.046 0.954 8 C -0.193 4.193 9 C -0.017 4.017 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.712 3.288 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.196 1.196 18 C -0.171 4.171 19 H 0.100 0.900 20 C -0.153 4.153 21 C -0.194 4.194 22 C -0.018 4.018 23 O -0.297 6.297 24 C -0.015 4.015 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.176 0.824 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.358 -10.753 12.016 16.129 hybrid contribution 1.792 0.116 -0.126 1.801 sum 2.151 -10.637 11.890 16.098 Atomic orbital electron populations 1.21613 0.95566 0.99771 1.02694 1.21622 0.96518 0.96197 1.00933 1.21577 0.90449 0.95066 0.94554 0.91057 1.60723 1.55603 1.09221 1.05383 1.21599 0.94279 0.86900 0.99389 0.95363 1.21807 0.98620 0.99760 0.99067 1.19273 0.96936 0.95355 0.90117 1.21204 0.98208 1.32569 1.04097 0.92727 1.24967 0.96974 0.95094 0.96919 1.69962 1.34985 1.34338 1.13777 0.86697 0.85163 0.77748 0.79152 1.20574 1.21383 1.19648 1.22467 0.98264 1.01049 0.95368 0.90036 1.21666 0.94956 1.00913 0.97745 1.22193 0.96854 1.01944 0.98396 1.22520 0.99230 0.94626 0.85377 1.88000 1.21922 1.77678 1.42124 1.22798 0.80226 0.99282 0.99188 0.94241 0.93669 0.91225 0.92071 0.92560 0.82412 0.93405 0.92631 0.94721 0.96215 0.95685 0.93032 0.91866 0.91584 0.91186 0.91422 0.89478 0.93658 0.93153 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.73 37.15 0.36 -1.41 16 2 C -0.11 -1.49 4.90 -26.73 -0.13 -1.62 16 3 C 0.09 1.42 1.68 -67.71 -0.11 1.30 16 4 H 0.07 1.08 7.09 -51.93 -0.37 0.72 16 5 N -0.68 -12.29 5.56 -99.74 -0.55 -12.85 16 6 C 0.09 1.78 2.41 -67.71 -0.16 1.62 16 7 H 0.03 0.60 7.17 -51.93 -0.37 0.23 16 8 C -0.13 -2.39 9.36 37.16 0.35 -2.04 16 9 C 0.02 0.52 4.58 -27.89 -0.13 0.39 16 10 C -0.52 -14.20 8.12 -34.44 -0.28 -14.48 16 11 H 0.05 1.45 6.88 -52.49 -0.36 1.09 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 14 Si 0.88 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 C -0.15 -2.28 2.28 -90.48 -0.21 -2.48 16 19 H 0.08 1.46 7.47 -51.93 -0.39 1.07 16 20 C -0.11 -1.40 5.05 -26.55 -0.13 -1.53 16 21 C -0.16 -1.82 6.14 -26.59 -0.16 -1.99 16 22 C 0.06 0.75 6.84 37.21 0.25 1.01 16 23 O -0.38 -6.43 10.77 -35.23 -0.38 -6.81 16 24 C 0.06 0.99 5.51 37.20 0.20 1.20 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 28 H 0.06 0.82 6.59 -51.93 -0.34 0.47 16 29 H 0.06 0.64 6.17 -51.93 -0.32 0.32 16 30 H 0.35 7.07 4.81 -39.29 -0.19 6.88 16 31 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.03 0.54 7.44 -51.93 -0.39 0.16 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.73 6.20 -51.93 -0.32 0.41 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.05 0.72 6.39 -51.92 -0.33 0.39 16 44 H 0.10 1.94 5.79 -51.93 -0.30 1.64 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -29.00 330.24 -8.36 -37.37 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.87 Total: 4.70 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -0.25 Total: -18.38 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.18 Total: -38.70 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.38 Total: -6.81 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.00 -8.36 -37.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723999496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.096 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds