Wall clock time and date at job start Mon Mar 30 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47553 * 2 1 4 4 H 1.09001 * 109.46632 * 56.07664 * 3 2 1 5 5 N 1.46898 * 109.46833 * 296.08149 * 3 2 1 6 6 C 1.46902 * 110.99804 * 154.29516 * 5 3 2 7 7 H 1.09002 * 109.47044 * 35.94106 * 6 5 3 8 8 C 1.52999 * 109.46753 * 275.94287 * 6 5 3 9 9 C 1.52995 * 109.47292 * 155.94198 * 6 5 3 10 10 C 1.50700 * 109.47100 * 294.99922 * 9 6 5 11 11 H 1.08000 * 119.99852 * 359.97438 * 10 9 6 12 12 C 1.37887 * 119.99929 * 179.72185 * 10 9 6 13 13 N 1.31513 * 119.99973 * 0.27509 * 12 10 9 14 14 Si 1.86799 * 119.99801 * 180.27476 * 12 10 9 15 15 H 1.48493 * 109.47039 * 90.00243 * 14 12 10 16 16 H 1.48499 * 109.46700 * 210.00042 * 14 12 10 17 17 H 1.48496 * 109.47248 * 329.99846 * 14 12 10 18 18 C 1.53003 * 109.47322 * 176.07628 * 3 2 1 19 19 H 1.09000 * 109.52053 * 179.87690 * 18 3 2 20 20 C 1.53173 * 109.52186 * 300.00226 * 18 3 2 21 21 C 1.53186 * 109.03558 * 176.88643 * 20 18 3 22 22 C 1.53093 * 109.16045 * 303.01690 * 21 20 18 23 23 O 1.42909 * 109.41457 * 57.60958 * 22 21 20 24 24 C 1.42902 * 114.09604 * 298.84369 * 23 22 21 25 25 H 1.09001 * 109.47418 * 185.05975 * 1 2 3 26 26 H 1.08998 * 109.47519 * 305.06590 * 1 2 3 27 27 H 1.09005 * 109.46839 * 65.06115 * 1 2 3 28 28 H 1.08998 * 109.47220 * 239.99596 * 2 1 3 29 29 H 1.09003 * 109.46908 * 120.00108 * 2 1 3 30 30 H 1.00897 * 110.99926 * 278.24239 * 5 3 2 31 31 H 1.09007 * 109.46801 * 184.95833 * 8 6 5 32 32 H 1.09000 * 109.47319 * 304.95862 * 8 6 5 33 33 H 1.08992 * 109.47487 * 64.96400 * 8 6 5 34 34 H 1.08995 * 109.47197 * 174.99648 * 9 6 5 35 35 H 1.09004 * 109.46968 * 54.99406 * 9 6 5 36 36 H 0.96991 * 119.99828 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.54535 * 296.75271 * 20 18 3 38 38 H 1.08998 * 109.54617 * 56.93000 * 20 18 3 39 39 H 1.09001 * 109.52011 * 62.92386 * 21 20 18 40 40 H 1.09003 * 109.51915 * 183.04958 * 21 20 18 41 41 H 1.09002 * 109.47910 * 177.58591 * 22 21 20 42 42 H 1.08994 * 109.48166 * 297.61424 * 22 21 20 43 43 H 1.09008 * 109.47960 * 301.17223 * 24 23 22 44 44 H 1.09005 * 109.48025 * 181.14329 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6204 1.9762 0.8528 5 7 1.6292 2.1071 -1.2440 6 6 1.5374 3.5614 -1.0583 7 1 2.3226 3.8911 -0.3779 8 6 0.1704 3.9150 -0.4690 9 6 1.7066 4.2597 -2.4090 10 6 3.0980 4.0116 -2.9320 11 1 3.7923 3.4158 -2.3580 12 6 3.4830 4.5409 -4.1456 13 7 2.6376 5.2668 -4.8442 14 14 5.2052 4.2270 -4.7973 15 1 5.2058 2.9895 -5.6181 16 1 5.6348 5.3761 -5.6341 17 1 6.1439 4.0659 -3.6581 18 6 3.5669 1.4436 0.0987 19 1 3.9313 2.4708 0.0966 20 6 3.9964 0.7507 1.3955 21 6 5.5262 0.6887 1.4458 22 6 6.0408 -0.0383 0.2006 23 8 5.5799 0.6398 -0.9699 24 6 4.1571 0.6874 -1.0944 25 1 -0.3634 -1.0236 0.0906 26 1 -0.3634 0.5904 0.8411 27 1 -0.3633 0.4333 -0.9319 28 1 1.8932 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 2.2563 1.8781 -2.0004 31 1 0.0682 4.9988 -0.4132 32 1 -0.6157 3.5081 -1.1051 33 1 0.0849 3.4901 0.5310 34 1 1.5504 5.3314 -2.2861 35 1 0.9770 3.8648 -3.1161 36 1 2.9085 5.6394 -5.6977 37 1 3.6262 1.3159 2.2508 38 1 3.5882 -0.2596 1.4217 39 1 5.9311 1.7004 1.4703 40 1 5.8397 0.1491 2.3394 41 1 7.1307 -0.0478 0.2097 42 1 5.6683 -1.0626 0.1978 43 1 3.7598 -0.3274 -1.1142 44 1 3.8900 1.2006 -2.0182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723999496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:31 Heat of formation + Delta-G solvation = -96.227023 kcal Electronic energy + Delta-G solvation = -20783.483074 eV Core-core repulsion = 17926.665912 eV Total energy + Delta-G solvation = -2856.817162 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92066 -38.54767 -36.08179 -34.43294 -33.71683 -31.96726 -30.28913 -29.25096 -26.38293 -25.95224 -24.99672 -23.79510 -22.09233 -21.11220 -20.07105 -18.52852 -17.40782 -17.09911 -16.61078 -16.39544 -15.88023 -15.72467 -15.26853 -15.16984 -14.62292 -14.42597 -14.13166 -13.61278 -13.50570 -13.44050 -13.17209 -12.96888 -12.74474 -12.60496 -12.52593 -12.39966 -12.30619 -12.23072 -12.03934 -11.58088 -11.44693 -11.33560 -11.28277 -11.06196 -10.88848 -10.57162 -10.31453 -9.05127 -8.19794 -6.28304 1.36268 1.37450 1.48781 2.38899 2.94784 3.13023 3.48259 3.77078 3.85969 3.90718 4.03816 4.21687 4.26238 4.32658 4.41258 4.45713 4.53759 4.64375 4.66026 4.76410 4.79180 4.81564 4.89849 4.92653 4.97554 5.04993 5.08948 5.18918 5.24568 5.25941 5.26778 5.36027 5.40599 5.48612 5.55364 5.61253 5.67232 5.86458 6.22913 6.30751 6.49654 6.71085 6.87419 7.40262 8.91888 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.008670 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.134184 B = 3228.657907 C = 4549.998937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C 0.096 3.904 4 H 0.075 0.925 5 N -0.676 5.676 6 C 0.098 3.902 7 H 0.018 0.982 8 C -0.126 4.126 9 C 0.028 3.972 10 C -0.525 4.525 11 H 0.056 0.944 12 C 0.009 3.991 13 N -0.929 5.929 14 Si 0.949 3.051 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.272 1.272 18 C -0.144 4.144 19 H 0.044 0.956 20 C -0.110 4.110 21 C -0.153 4.153 22 C 0.050 3.950 23 O -0.412 6.412 24 C 0.065 3.935 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.341 0.659 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.061 0.939 34 H -0.008 1.008 35 H -0.002 1.002 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -13.011 14.283 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C -0.014 4.014 4 H 0.093 0.907 5 N -0.308 5.308 6 C -0.012 4.012 7 H 0.036 0.964 8 C -0.184 4.184 9 C -0.009 4.009 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.189 4.189 13 N -0.569 5.569 14 Si 0.775 3.225 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.196 1.196 18 C -0.165 4.165 19 H 0.062 0.938 20 C -0.148 4.148 21 C -0.191 4.191 22 C -0.026 4.026 23 O -0.332 6.332 24 C -0.012 4.012 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.162 0.838 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.010 0.990 35 H 0.016 0.984 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.940 -12.926 14.082 19.138 hybrid contribution 1.622 0.773 -0.736 1.942 sum 2.562 -12.154 13.346 18.231 Atomic orbital electron populations 1.21576 0.95273 1.00901 1.01628 1.21603 0.96699 0.94358 1.01996 1.21686 0.90598 0.96306 0.92810 0.90691 1.60779 1.55578 1.07719 1.06742 1.21363 0.95641 0.88002 0.96152 0.96351 1.21706 0.96536 0.99946 1.00173 1.19132 0.95385 0.94042 0.92389 1.21503 0.98996 1.31766 1.04054 0.92583 1.25764 1.00684 0.95058 0.97410 1.70078 1.36912 1.35614 1.14306 0.85686 0.80575 0.77843 0.78433 1.19807 1.20828 1.19646 1.22341 0.97976 0.99225 0.96958 0.93751 1.21665 0.95466 1.01676 0.95945 1.22185 0.96330 1.01320 0.99231 1.22816 1.00139 0.95339 0.84271 1.87943 1.22116 1.78678 1.44441 1.22674 0.80446 1.00009 0.98047 0.92315 0.93186 0.93562 0.92499 0.89848 0.83808 0.93414 0.92951 0.92052 0.98964 0.98386 0.92906 0.90861 0.89491 0.92969 0.88238 0.88218 0.91639 0.91073 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.73 71.98 0.70 -2.42 16 2 C -0.11 -2.51 4.90 30.59 0.15 -2.36 16 3 C 0.10 2.75 1.68 44.92 0.08 2.83 16 4 H 0.07 2.11 7.09 -2.39 -0.02 2.09 16 5 N -0.68 -24.80 5.56 -469.46 -2.61 -27.41 16 6 C 0.10 4.07 2.41 44.91 0.11 4.18 16 7 H 0.02 0.80 7.17 -2.39 -0.02 0.78 16 8 C -0.13 -4.41 9.36 71.98 0.67 -3.73 16 9 C 0.03 1.47 4.58 29.85 0.14 1.61 16 10 C -0.53 -29.55 8.12 25.60 0.21 -29.34 16 11 H 0.06 3.09 6.88 -2.91 -0.02 3.07 16 12 C 0.01 0.53 5.46 84.66 0.46 0.99 16 13 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 14 Si 0.95 45.95 29.54 68.60 2.03 47.98 16 15 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 17 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 18 C -0.14 -4.22 2.28 -10.71 -0.02 -4.25 16 19 H 0.04 1.62 7.47 -2.39 -0.02 1.60 16 20 C -0.11 -2.33 5.05 30.71 0.15 -2.18 16 21 C -0.15 -3.14 6.14 30.69 0.19 -2.95 16 22 C 0.05 1.15 6.84 72.01 0.49 1.65 16 23 O -0.41 -13.72 10.77 -148.98 -1.60 -15.32 16 24 C 0.06 2.06 5.51 72.01 0.40 2.45 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.27 7.87 -2.38 -0.02 1.26 16 28 H 0.06 1.38 6.59 -2.39 -0.02 1.36 16 29 H 0.08 1.51 6.17 -2.39 -0.01 1.50 16 30 H 0.34 14.08 4.81 -89.70 -0.43 13.65 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.82 7.44 -2.39 -0.02 1.80 16 34 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 36 H 0.26 15.20 8.31 -92.72 -0.77 14.43 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.52 6.20 -2.39 -0.01 1.50 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.91 6.39 -2.38 -0.02 1.90 16 44 H 0.07 2.64 5.79 -2.38 -0.01 2.63 16 Total: -1.00 -64.58 330.24 2.34 -62.24 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.52 Total: 22.75 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 3.72 Total: -33.53 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -2.32 Total: -84.12 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -1.60 Total: -15.32 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -64.58 2.34 -62.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723999496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.989 kcal (2) G-P(sol) polarization free energy of solvation -64.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds