Wall clock time and date at job start Mon Mar 30 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46743 * 2 1 4 4 H 1.08996 * 109.47505 * 54.42057 * 3 2 1 5 5 N 1.46901 * 109.47102 * 294.41571 * 3 2 1 6 6 C 1.46892 * 110.99906 * 144.59242 * 5 3 2 7 7 H 1.09004 * 109.47474 * 47.39636 * 6 5 3 8 8 C 1.53000 * 109.47182 * 287.39652 * 6 5 3 9 9 C 1.53003 * 109.47028 * 167.39299 * 6 5 3 10 10 C 1.50696 * 109.47265 * 297.53639 * 9 6 5 11 11 H 1.07999 * 120.00003 * 0.23215 * 10 9 6 12 12 C 1.37881 * 119.99942 * 180.22266 * 10 9 6 13 13 N 1.31506 * 119.99986 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99766 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47212 * 89.99657 * 14 12 10 16 16 H 1.48507 * 109.46857 * 209.99592 * 14 12 10 17 17 H 1.48498 * 109.47092 * 329.99335 * 14 12 10 18 18 C 1.53005 * 109.46576 * 174.41925 * 3 2 1 19 19 H 1.08998 * 109.52601 * 65.68537 * 18 3 2 20 20 C 1.53175 * 109.52357 * 305.48793 * 18 3 2 21 21 C 1.53177 * 109.04527 * 183.12193 * 20 18 3 22 22 C 1.53090 * 109.16356 * 56.96782 * 21 20 18 23 23 O 1.42906 * 109.42247 * 302.40547 * 22 21 20 24 24 C 1.42904 * 114.09464 * 61.15241 * 23 22 21 25 25 H 1.09001 * 109.47247 * 296.10002 * 1 2 3 26 26 H 1.09001 * 109.47045 * 56.10515 * 1 2 3 27 27 H 1.09007 * 109.46748 * 176.10242 * 1 2 3 28 28 H 1.09002 * 109.47199 * 239.99472 * 2 1 3 29 29 H 1.09004 * 109.46783 * 119.99578 * 2 1 3 30 30 H 1.00898 * 110.99919 * 20.63421 * 5 3 2 31 31 H 1.09003 * 109.47066 * 305.18649 * 8 6 5 32 32 H 1.08991 * 109.47278 * 65.18731 * 8 6 5 33 33 H 1.09001 * 109.47014 * 185.19341 * 8 6 5 34 34 H 1.09001 * 109.46638 * 57.54132 * 9 6 5 35 35 H 1.09002 * 109.47145 * 177.53710 * 9 6 5 36 36 H 0.97003 * 120.00300 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.54832 * 302.98961 * 20 18 3 38 38 H 1.09006 * 109.53893 * 63.16313 * 20 18 3 39 39 H 1.09006 * 109.51460 * 297.06256 * 21 20 18 40 40 H 1.09004 * 109.53311 * 176.88011 * 21 20 18 41 41 H 1.09001 * 109.48121 * 182.41946 * 22 21 20 42 42 H 1.09002 * 109.48230 * 62.39477 * 22 21 20 43 43 H 1.09005 * 109.48227 * 58.82769 * 24 23 22 44 44 H 1.09008 * 109.48088 * 178.84620 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9844 0.8358 5 7 1.6634 2.0950 -1.2611 6 6 1.3427 3.5122 -1.0454 7 1 2.1200 3.9718 -0.4349 8 6 -0.0037 3.6269 -0.3278 9 6 1.2641 4.2285 -2.3950 10 6 2.6076 4.1677 -3.0750 11 1 3.4338 3.6648 -2.5945 12 6 2.7819 4.7539 -4.3108 13 7 3.9542 4.7004 -4.9044 14 14 1.3530 5.6240 -5.1417 15 1 1.3434 7.0538 -4.7409 16 1 1.5023 5.5241 -6.6159 17 1 0.0773 4.9857 -4.7291 18 6 3.5636 1.4448 0.1403 19 1 4.0115 0.9922 -0.7443 20 6 3.9643 0.6459 1.3843 21 6 5.4843 0.7205 1.5580 22 6 5.9083 2.1887 1.6487 23 8 5.4783 2.8809 0.4748 24 6 4.0618 2.8850 0.2860 25 1 -0.3634 0.4521 0.9229 26 1 -0.3633 0.5731 -0.8530 27 1 -0.3633 -1.0254 -0.0699 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.8942 1.6132 -1.7019 31 1 -0.7639 3.0878 -0.8933 32 1 0.0789 3.1977 0.6706 33 1 -0.2855 4.6769 -0.2498 34 1 0.5172 3.7414 -3.0219 35 1 0.9833 5.2699 -2.2379 36 1 4.0770 5.1131 -5.7736 37 1 3.4759 1.0688 2.2622 38 1 3.6603 -0.3939 1.2634 39 1 5.9720 0.2526 0.7028 40 1 5.7726 0.2010 2.4719 41 1 6.9937 2.2494 1.7293 42 1 5.4525 2.6452 2.5274 43 1 3.5816 3.3505 1.1468 44 1 3.8167 3.4475 -0.6151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723999500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:37 Heat of formation + Delta-G solvation = -88.910166 kcal Electronic energy + Delta-G solvation = -20685.434974 eV Core-core repulsion = 17828.935096 eV Total energy + Delta-G solvation = -2856.499879 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76939 -38.72052 -36.05367 -34.42073 -33.63058 -32.13558 -30.66021 -29.27170 -26.58596 -25.93996 -24.59069 -23.35292 -21.71317 -21.30698 -20.67366 -18.75675 -17.22778 -16.96658 -16.63100 -16.45617 -15.77510 -15.68107 -15.25662 -14.86045 -14.69760 -14.40029 -14.13694 -14.04650 -13.63665 -13.48205 -13.33413 -13.30519 -12.90442 -12.51260 -12.37089 -12.15414 -12.10946 -11.92388 -11.72086 -11.61776 -11.54679 -11.48218 -11.28269 -11.14105 -10.82941 -10.63947 -10.23703 -8.90580 -8.11934 -6.10694 1.37683 1.39560 1.50311 2.44805 3.05701 3.20057 3.41803 3.77896 3.94806 4.00775 4.07846 4.17346 4.25924 4.34065 4.36064 4.41145 4.46694 4.55372 4.61634 4.65121 4.72964 4.87173 4.90270 4.94107 4.96416 5.01563 5.13134 5.15149 5.16465 5.19395 5.22471 5.24994 5.34125 5.41127 5.45632 5.56118 5.62748 5.80639 6.39613 6.44596 6.61886 6.82502 7.00956 7.49749 9.05222 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.007180 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.528723 B = 3898.715091 C = 4896.379087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.098 3.902 4 H 0.054 0.946 5 N -0.681 5.681 6 C 0.097 3.903 7 H 0.063 0.937 8 C -0.174 4.174 9 C -0.005 4.005 10 C -0.485 4.485 11 H 0.042 0.958 12 C -0.007 4.007 13 N -0.960 5.960 14 Si 0.944 3.056 15 H -0.273 1.273 16 H -0.292 1.292 17 H -0.248 1.248 18 C -0.101 4.101 19 H 0.050 0.950 20 C -0.112 4.112 21 C -0.151 4.151 22 C 0.048 3.952 23 O -0.416 6.416 24 C 0.066 3.934 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.338 0.662 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.014 0.986 35 H 0.016 0.984 36 H 0.258 0.742 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 -9.727 16.742 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.012 4.012 4 H 0.071 0.929 5 N -0.313 5.313 6 C -0.013 4.013 7 H 0.081 0.919 8 C -0.233 4.233 9 C -0.043 4.043 10 C -0.523 4.523 11 H 0.060 0.940 12 C -0.201 4.201 13 N -0.603 5.603 14 Si 0.769 3.231 15 H -0.198 1.198 16 H -0.219 1.219 17 H -0.172 1.172 18 C -0.121 4.121 19 H 0.068 0.932 20 C -0.150 4.150 21 C -0.189 4.189 22 C -0.029 4.029 23 O -0.336 6.336 24 C -0.010 4.010 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.159 0.841 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.275 -9.470 16.277 19.556 hybrid contribution -0.969 0.555 -0.586 1.261 sum -6.244 -8.915 15.691 19.096 Atomic orbital electron populations 1.21812 0.95025 1.02329 1.01690 1.21804 0.96429 0.95110 1.02997 1.21498 0.93391 0.95134 0.91160 0.92855 1.60381 1.44950 1.02000 1.23992 1.21490 0.95153 0.88854 0.95817 0.91891 1.22494 0.97786 1.02398 1.00638 1.19593 0.95357 0.95034 0.94300 1.21369 0.96780 1.31919 1.02266 0.93970 1.25968 0.97965 0.97737 0.98451 1.70106 1.25358 1.48075 1.16714 0.85759 0.80977 0.79263 0.77103 1.19809 1.21882 1.17215 1.21687 0.96386 0.95526 0.98479 0.93191 1.21714 0.95567 1.00986 0.96702 1.22169 0.96624 0.96825 1.03239 1.22823 1.00612 0.92177 0.87251 1.87978 1.23474 1.76147 1.45984 1.22788 0.80213 0.97394 1.00575 0.92128 0.93549 0.91378 0.92416 0.89287 0.84115 0.92383 0.91700 0.92201 0.96719 0.96603 0.93301 0.90735 0.89644 0.92521 0.88200 0.88334 0.92297 0.93330 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.81 71.98 0.71 -2.14 16 2 C -0.13 -2.73 5.11 30.60 0.16 -2.58 16 3 C 0.10 2.72 1.62 44.92 0.07 2.79 16 4 H 0.05 1.39 6.33 -2.39 -0.02 1.37 16 5 N -0.68 -24.05 5.53 -469.47 -2.60 -26.64 16 6 C 0.10 3.60 1.89 44.92 0.09 3.68 16 7 H 0.06 2.51 5.32 -2.38 -0.01 2.50 16 8 C -0.17 -4.92 9.09 71.98 0.65 -4.26 16 9 C -0.01 -0.24 3.74 29.85 0.11 -0.13 16 10 C -0.48 -28.31 9.33 25.60 0.24 -28.07 16 11 H 0.04 2.76 6.57 -2.91 -0.02 2.74 16 12 C -0.01 -0.42 5.47 84.66 0.46 0.05 16 13 N -0.96 -63.08 13.96 21.45 0.30 -62.78 16 14 Si 0.94 46.09 27.46 68.60 1.88 47.97 16 15 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 16 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 17 H -0.25 -11.18 6.55 99.48 0.65 -10.53 16 18 C -0.10 -3.12 2.19 -10.70 -0.02 -3.14 16 19 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 20 C -0.11 -2.46 4.70 30.71 0.14 -2.31 16 21 C -0.15 -3.29 6.14 30.68 0.19 -3.10 16 22 C 0.05 1.23 6.84 72.01 0.49 1.72 16 23 O -0.42 -15.78 10.77 -148.98 -1.60 -17.38 16 24 C 0.07 2.43 4.82 72.01 0.35 2.78 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 0.98 6.48 -2.39 -0.02 0.96 16 27 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.56 6.09 -2.39 -0.01 1.55 16 30 H 0.34 11.25 6.41 -89.70 -0.57 10.67 16 31 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 32 H 0.06 1.55 6.83 -2.39 -0.02 1.54 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.01 0.68 7.22 -2.39 -0.02 0.66 16 35 H 0.02 0.72 7.56 -2.39 -0.02 0.70 16 36 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.58 6.42 -2.38 -0.02 1.57 16 39 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 1.57 8.08 -2.38 -0.02 1.55 16 44 H 0.08 3.53 4.81 -2.38 -0.01 3.52 16 Total: -1.00 -70.84 325.19 1.95 -68.89 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.33 Total: 24.65 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 3.64 Total: -34.70 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -2.30 Total: -89.42 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -1.60 Total: -17.38 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.97 kcal Total: -70.84 1.95 -68.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723999500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.022 kcal (2) G-P(sol) polarization free energy of solvation -70.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds