Wall clock time and date at job start Mon Mar 30 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47306 * 2 1 4 4 H 1.09010 * 109.47252 * 54.60724 * 3 2 1 5 5 N 1.46902 * 109.47377 * 294.60895 * 3 2 1 6 6 C 1.46907 * 111.00094 * 98.38407 * 5 3 2 7 7 H 1.09005 * 109.46839 * 312.63624 * 6 5 3 8 8 C 1.52999 * 109.47103 * 72.63654 * 6 5 3 9 9 C 1.53000 * 109.46994 * 192.63806 * 6 5 3 10 10 C 1.50702 * 109.47165 * 65.00022 * 9 6 5 11 11 H 1.07997 * 120.00069 * 359.97438 * 10 9 6 12 12 C 1.37875 * 119.99913 * 180.02562 * 10 9 6 13 13 N 1.31514 * 119.99882 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00042 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47074 * 90.00389 * 14 12 10 16 16 H 1.48508 * 109.47299 * 210.00235 * 14 12 10 17 17 H 1.48500 * 109.47243 * 330.00315 * 14 12 10 18 18 C 1.52996 * 109.47643 * 174.60702 * 3 2 1 19 19 H 1.08997 * 109.57162 * 59.84005 * 18 3 2 20 20 C 1.53186 * 109.52114 * 299.69126 * 18 3 2 21 21 C 1.53176 * 109.04382 * 183.11587 * 20 18 3 22 22 C 1.53090 * 109.16621 * 56.96189 * 21 20 18 23 23 O 1.42904 * 109.42338 * 302.41050 * 22 21 20 24 24 C 1.42898 * 114.10227 * 61.14682 * 23 22 21 25 25 H 1.08997 * 109.47127 * 58.06965 * 1 2 3 26 26 H 1.09003 * 109.47247 * 178.07105 * 1 2 3 27 27 H 1.09001 * 109.46987 * 298.07220 * 1 2 3 28 28 H 1.09004 * 109.46879 * 240.00275 * 2 1 3 29 29 H 1.08994 * 109.47095 * 120.00192 * 2 1 3 30 30 H 1.00901 * 110.99764 * 222.33533 * 5 3 2 31 31 H 1.08997 * 109.47202 * 59.99966 * 8 6 5 32 32 H 1.08995 * 109.46679 * 180.02562 * 8 6 5 33 33 H 1.09000 * 109.47127 * 300.00198 * 8 6 5 34 34 H 1.08992 * 109.46924 * 184.99473 * 9 6 5 35 35 H 1.08996 * 109.47170 * 305.00070 * 9 6 5 36 36 H 0.96998 * 119.99968 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.53729 * 302.97452 * 20 18 3 38 38 H 1.08997 * 109.54393 * 63.15001 * 20 18 3 39 39 H 1.08995 * 109.51511 * 297.05938 * 21 20 18 40 40 H 1.09005 * 109.52882 * 176.86866 * 21 20 18 41 41 H 1.08999 * 109.48403 * 182.41694 * 22 21 20 42 42 H 1.09001 * 109.48198 * 62.38814 * 22 21 20 43 43 H 1.09005 * 109.48111 * 58.82473 * 24 23 22 44 44 H 1.09001 * 109.48282 * 178.85990 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9835 0.8378 5 7 1.6596 2.0964 -1.2592 6 6 0.4492 2.9105 -1.0848 7 1 -0.3046 2.3312 -0.5517 8 6 0.7907 4.1663 -0.2802 9 6 -0.0947 3.3158 -2.4563 10 6 -0.5454 2.0858 -3.2014 11 1 -0.4528 1.1124 -2.7428 12 6 -1.0751 2.2031 -4.4689 13 7 -1.4689 1.1298 -5.1190 14 14 -1.2347 3.8867 -5.2623 15 1 0.0041 4.1960 -6.0207 16 1 -2.3957 3.8895 -6.1884 17 1 -1.4394 4.9130 -4.2088 18 6 3.5640 1.4447 0.1356 19 1 4.0057 0.9016 -0.6999 20 6 3.9618 0.7699 1.4520 21 6 5.4830 0.8473 1.6136 22 6 5.9206 2.3132 1.5565 23 8 5.4927 2.8890 0.3205 24 6 4.0757 2.8875 0.1357 25 1 -0.3633 0.5435 -0.8721 26 1 -0.3634 -1.0271 -0.0346 27 1 -0.3633 0.4836 0.9068 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.4197 2.6518 -1.6222 31 1 1.5445 4.7455 -0.8133 32 1 -0.1074 4.7700 -0.1505 33 1 1.1783 3.8775 0.6968 34 1 -0.9397 3.9919 -2.3266 35 1 0.6887 3.8178 -3.0240 36 1 -1.8419 1.2124 -6.0105 37 1 3.4802 1.2828 2.2846 38 1 3.6480 -0.2738 1.4361 39 1 5.9635 0.2921 0.8081 40 1 5.7697 0.4188 2.5741 41 1 7.0067 2.3715 1.6279 42 1 5.4718 2.8592 2.3863 43 1 3.6026 3.4408 0.9471 44 1 3.8327 3.3595 -0.8163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723999502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:40 Heat of formation + Delta-G solvation = -69.007619 kcal Electronic energy + Delta-G solvation = -20497.642001 eV Core-core repulsion = 17642.005161 eV Total energy + Delta-G solvation = -2855.636840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84229 -37.52728 -34.58657 -32.85444 -32.06692 -31.25531 -29.11031 -27.67490 -25.47043 -25.05346 -22.74413 -22.25885 -20.53812 -20.09990 -19.39906 -16.60570 -16.40825 -16.19279 -15.44343 -14.90215 -14.68389 -14.18236 -13.78166 -13.64541 -13.45279 -13.07687 -12.83976 -12.53659 -12.41946 -12.27198 -12.02263 -11.66991 -11.44404 -11.28507 -11.26004 -11.10137 -10.73493 -10.64354 -10.46057 -10.31882 -10.21943 -9.97167 -9.67930 -9.51569 -9.36902 -8.89541 -8.39209 -7.57983 -5.87659 -3.81585 3.38509 3.45976 3.48137 3.78496 4.53452 4.57490 4.66752 4.75265 4.81861 4.96301 5.08907 5.27482 5.34867 5.45827 5.48391 5.56008 5.59390 5.63304 5.67446 5.76767 5.81178 5.83838 5.87976 5.90822 5.95939 6.07930 6.17506 6.28799 6.38642 6.41687 6.50112 6.50986 6.74902 6.86295 7.07108 7.11616 7.20689 7.36517 7.85445 7.95552 8.13599 8.75750 9.26208 9.75671 11.26079 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.005536 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.208650 B = 5056.140752 C = 5495.980419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C 0.094 3.906 4 H 0.045 0.955 5 N -0.657 5.657 6 C 0.092 3.908 7 H 0.081 0.919 8 C -0.188 4.188 9 C -0.006 4.006 10 C -0.489 4.489 11 H 0.083 0.917 12 C 0.061 3.939 13 N -0.908 5.908 14 Si 0.873 3.127 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.269 1.269 18 C -0.129 4.129 19 H 0.087 0.913 20 C -0.115 4.115 21 C -0.156 4.156 22 C 0.059 3.941 23 O -0.382 6.382 24 C 0.063 3.937 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.331 0.669 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.016 0.984 35 H 0.009 0.991 36 H 0.259 0.741 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.589 1.553 15.268 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.144 4.144 3 C -0.017 4.017 4 H 0.063 0.937 5 N -0.289 5.289 6 C -0.017 4.017 7 H 0.099 0.901 8 C -0.247 4.247 9 C -0.044 4.044 10 C -0.528 4.528 11 H 0.101 0.899 12 C -0.138 4.138 13 N -0.549 5.549 14 Si 0.701 3.299 15 H -0.206 1.206 16 H -0.218 1.218 17 H -0.194 1.194 18 C -0.149 4.149 19 H 0.106 0.894 20 C -0.153 4.153 21 C -0.193 4.193 22 C -0.018 4.018 23 O -0.300 6.300 24 C -0.014 4.014 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.151 0.849 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.035 0.965 35 H 0.027 0.973 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.286 1.031 14.714 18.573 hybrid contribution 0.038 1.511 0.143 1.518 sum 11.324 2.541 14.857 18.853 Atomic orbital electron populations 1.21944 0.95672 1.01303 1.02751 1.21529 0.96523 0.95517 1.00818 1.21536 0.91593 0.96274 0.92249 0.93732 1.60574 1.06714 1.36091 1.25478 1.21757 0.91964 0.90287 0.97703 0.90122 1.22683 1.01580 1.00601 0.99839 1.19626 0.95219 0.97569 0.91982 1.21095 1.38172 0.93844 0.99641 0.89919 1.25012 0.95700 0.95790 0.97333 1.69911 1.43877 1.28074 1.13025 0.86902 0.77513 0.86016 0.79456 1.20644 1.21766 1.19420 1.22070 0.96858 0.96948 0.98980 0.89443 1.21662 0.94974 1.01641 0.97057 1.22195 0.96991 0.97654 1.02505 1.22559 0.99788 0.92732 0.86675 1.87943 1.22363 1.81134 1.38594 1.22733 0.80927 0.95948 1.01779 0.89051 0.93814 0.94422 0.91389 0.93206 0.84908 0.93285 0.92567 0.93958 0.96550 0.97276 0.93140 0.92121 0.90801 0.90981 0.91145 0.89218 0.93539 0.93473 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.84 37.16 0.33 -2.32 16 2 C -0.11 -1.59 5.41 -26.73 -0.14 -1.73 16 3 C 0.09 1.35 1.56 -67.72 -0.11 1.25 16 4 H 0.04 0.64 6.33 -51.92 -0.33 0.31 16 5 N -0.66 -11.54 5.53 -99.73 -0.55 -12.09 16 6 C 0.09 1.73 1.82 -67.71 -0.12 1.61 16 7 H 0.08 1.58 5.65 -51.93 -0.29 1.28 16 8 C -0.19 -2.90 9.14 37.16 0.34 -2.56 16 9 C -0.01 -0.15 3.72 -27.88 -0.10 -0.25 16 10 C -0.49 -13.61 9.39 -34.44 -0.32 -13.93 16 11 H 0.08 2.48 6.33 -52.49 -0.33 2.15 16 12 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 13 N -0.91 -28.25 13.96 55.43 0.77 -27.47 16 14 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 18 C -0.13 -1.62 2.01 -90.48 -0.18 -1.80 16 19 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 20 C -0.12 -1.21 4.88 -26.54 -0.13 -1.34 16 21 C -0.16 -1.45 6.14 -26.59 -0.16 -1.61 16 22 C 0.06 0.59 6.84 37.20 0.25 0.84 16 23 O -0.38 -4.97 10.77 -35.23 -0.38 -5.35 16 24 C 0.06 0.79 5.89 37.20 0.22 1.01 16 25 H 0.09 1.86 4.39 -51.93 -0.23 1.63 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.64 6.24 -51.93 -0.32 0.31 16 30 H 0.33 5.58 6.16 -39.29 -0.24 5.34 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.58 6.77 -51.93 -0.35 0.23 16 34 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 35 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.76 6.50 -51.93 -0.34 0.42 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 1.25 6.38 -51.93 -0.33 0.91 16 LS Contribution 325.11 15.07 4.90 4.90 Total: -1.00 -30.23 325.11 -7.93 -38.17 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.78 Total: 3.70 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.23 Total: -19.16 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.22 Total: -39.56 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.38 Total: -5.35 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.23 -7.93 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723999502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.841 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds