Wall clock time and date at job start Mon Mar 30 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47306 * 2 1 4 4 H 1.09010 * 109.47252 * 54.60724 * 3 2 1 5 5 N 1.46902 * 109.47377 * 294.60895 * 3 2 1 6 6 C 1.46907 * 111.00094 * 98.38407 * 5 3 2 7 7 H 1.09005 * 109.46839 * 312.63624 * 6 5 3 8 8 C 1.52999 * 109.47103 * 72.63654 * 6 5 3 9 9 C 1.53000 * 109.46994 * 192.63806 * 6 5 3 10 10 C 1.50702 * 109.47165 * 65.00022 * 9 6 5 11 11 H 1.07997 * 120.00069 * 359.97438 * 10 9 6 12 12 C 1.37875 * 119.99913 * 180.02562 * 10 9 6 13 13 N 1.31514 * 119.99882 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00042 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47074 * 90.00389 * 14 12 10 16 16 H 1.48508 * 109.47299 * 210.00235 * 14 12 10 17 17 H 1.48500 * 109.47243 * 330.00315 * 14 12 10 18 18 C 1.52996 * 109.47643 * 174.60702 * 3 2 1 19 19 H 1.08997 * 109.57162 * 59.84005 * 18 3 2 20 20 C 1.53186 * 109.52114 * 299.69126 * 18 3 2 21 21 C 1.53176 * 109.04382 * 183.11587 * 20 18 3 22 22 C 1.53090 * 109.16621 * 56.96189 * 21 20 18 23 23 O 1.42904 * 109.42338 * 302.41050 * 22 21 20 24 24 C 1.42898 * 114.10227 * 61.14682 * 23 22 21 25 25 H 1.08997 * 109.47127 * 58.06965 * 1 2 3 26 26 H 1.09003 * 109.47247 * 178.07105 * 1 2 3 27 27 H 1.09001 * 109.46987 * 298.07220 * 1 2 3 28 28 H 1.09004 * 109.46879 * 240.00275 * 2 1 3 29 29 H 1.08994 * 109.47095 * 120.00192 * 2 1 3 30 30 H 1.00901 * 110.99764 * 222.33533 * 5 3 2 31 31 H 1.08997 * 109.47202 * 59.99966 * 8 6 5 32 32 H 1.08995 * 109.46679 * 180.02562 * 8 6 5 33 33 H 1.09000 * 109.47127 * 300.00198 * 8 6 5 34 34 H 1.08992 * 109.46924 * 184.99473 * 9 6 5 35 35 H 1.08996 * 109.47170 * 305.00070 * 9 6 5 36 36 H 0.96998 * 119.99968 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.53729 * 302.97452 * 20 18 3 38 38 H 1.08997 * 109.54393 * 63.15001 * 20 18 3 39 39 H 1.08995 * 109.51511 * 297.05938 * 21 20 18 40 40 H 1.09005 * 109.52882 * 176.86866 * 21 20 18 41 41 H 1.08999 * 109.48403 * 182.41694 * 22 21 20 42 42 H 1.09001 * 109.48198 * 62.38814 * 22 21 20 43 43 H 1.09005 * 109.48111 * 58.82473 * 24 23 22 44 44 H 1.09001 * 109.48282 * 178.85990 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9835 0.8378 5 7 1.6596 2.0964 -1.2592 6 6 0.4492 2.9105 -1.0848 7 1 -0.3046 2.3312 -0.5517 8 6 0.7907 4.1663 -0.2802 9 6 -0.0947 3.3158 -2.4563 10 6 -0.5454 2.0858 -3.2014 11 1 -0.4528 1.1124 -2.7428 12 6 -1.0751 2.2031 -4.4689 13 7 -1.4689 1.1298 -5.1190 14 14 -1.2347 3.8867 -5.2623 15 1 0.0041 4.1960 -6.0207 16 1 -2.3957 3.8895 -6.1884 17 1 -1.4394 4.9130 -4.2088 18 6 3.5640 1.4447 0.1356 19 1 4.0057 0.9016 -0.6999 20 6 3.9618 0.7699 1.4520 21 6 5.4830 0.8473 1.6136 22 6 5.9206 2.3132 1.5565 23 8 5.4927 2.8890 0.3205 24 6 4.0757 2.8875 0.1357 25 1 -0.3633 0.5435 -0.8721 26 1 -0.3634 -1.0271 -0.0346 27 1 -0.3633 0.4836 0.9068 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 2.4197 2.6518 -1.6222 31 1 1.5445 4.7455 -0.8133 32 1 -0.1074 4.7700 -0.1505 33 1 1.1783 3.8775 0.6968 34 1 -0.9397 3.9919 -2.3266 35 1 0.6887 3.8178 -3.0240 36 1 -1.8419 1.2124 -6.0105 37 1 3.4802 1.2828 2.2846 38 1 3.6480 -0.2738 1.4361 39 1 5.9635 0.2921 0.8081 40 1 5.7697 0.4188 2.5741 41 1 7.0067 2.3715 1.6279 42 1 5.4718 2.8592 2.3863 43 1 3.6026 3.4408 0.9471 44 1 3.8327 3.3595 -0.8163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723999502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:39 Heat of formation + Delta-G solvation = -88.744012 kcal Electronic energy + Delta-G solvation = -20498.497835 eV Core-core repulsion = 17642.005161 eV Total energy + Delta-G solvation = -2856.492674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.83947 -38.74911 -35.94744 -34.42471 -33.55461 -32.38359 -30.61425 -29.25638 -26.62411 -25.96839 -24.50830 -23.39285 -21.56850 -21.44746 -20.71613 -18.74371 -17.40891 -17.15952 -16.64558 -16.35827 -15.74391 -15.58667 -15.07874 -15.05545 -14.53407 -14.34991 -14.30356 -13.91306 -13.75602 -13.51731 -13.37222 -13.33483 -12.89686 -12.57467 -12.38417 -12.16992 -12.11128 -11.90203 -11.74770 -11.65280 -11.62410 -11.43611 -11.26075 -11.08671 -10.79355 -10.62800 -10.32305 -8.91496 -8.12521 -6.10343 1.38833 1.39677 1.50246 2.45085 2.92939 3.19648 3.39979 3.72468 3.86871 3.90958 4.04846 4.20894 4.28261 4.33909 4.37501 4.44064 4.50741 4.54418 4.58794 4.65492 4.70959 4.79136 4.88752 4.93757 4.94408 4.99403 5.09481 5.12588 5.15306 5.20386 5.25090 5.27838 5.36254 5.40192 5.53063 5.58488 5.68914 5.81665 6.26407 6.45026 6.61658 6.78949 7.01010 7.50220 9.04433 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.005536 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.208650 B = 5056.140752 C = 5495.980419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 C 0.101 3.899 4 H 0.056 0.944 5 N -0.680 5.680 6 C 0.099 3.901 7 H 0.069 0.931 8 C -0.177 4.177 9 C -0.006 4.006 10 C -0.484 4.484 11 H 0.047 0.953 12 C -0.005 4.005 13 N -0.960 5.960 14 Si 0.941 3.059 15 H -0.275 1.275 16 H -0.292 1.292 17 H -0.249 1.249 18 C -0.121 4.121 19 H 0.067 0.933 20 C -0.114 4.114 21 C -0.151 4.151 22 C 0.052 3.948 23 O -0.403 6.403 24 C 0.067 3.933 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.334 0.666 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.018 0.982 35 H 0.011 0.989 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.827 3.183 17.519 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.009 4.009 4 H 0.073 0.927 5 N -0.312 5.312 6 C -0.011 4.011 7 H 0.087 0.913 8 C -0.236 4.236 9 C -0.044 4.044 10 C -0.522 4.522 11 H 0.065 0.935 12 C -0.199 4.199 13 N -0.603 5.603 14 Si 0.766 3.234 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.172 1.172 18 C -0.140 4.140 19 H 0.085 0.915 20 C -0.151 4.151 21 C -0.189 4.189 22 C -0.024 4.024 23 O -0.322 6.322 24 C -0.010 4.010 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.154 0.846 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.539 2.672 16.992 21.286 hybrid contribution -0.322 0.892 -0.509 1.076 sum 12.217 3.564 16.483 20.824 Atomic orbital electron populations 1.21861 0.96956 1.00864 1.01568 1.21530 0.95255 0.96263 1.01046 1.21502 0.93024 0.95337 0.91019 0.92654 1.60443 1.06563 1.36369 1.27826 1.21504 0.92218 0.91980 0.95396 0.91305 1.22534 1.02103 0.98686 1.00308 1.19599 0.95278 0.95329 0.94151 1.21400 1.36800 0.94372 0.99644 0.93499 1.25913 0.95889 0.99816 0.98292 1.70082 1.45910 1.30718 1.13572 0.85804 0.77426 0.81420 0.78738 1.20097 1.21839 1.17239 1.21948 0.95036 0.97363 0.99691 0.91480 1.21665 0.96037 1.01572 0.95868 1.22173 0.95878 0.97383 1.03465 1.22802 1.00873 0.92960 0.85808 1.87918 1.22351 1.81616 1.40354 1.22645 0.81127 0.95600 1.01659 0.93260 0.93731 0.92604 0.93862 0.90178 0.84604 0.92556 0.92105 0.91727 0.96414 0.97104 0.93290 0.90931 0.90564 0.91928 0.88748 0.87719 0.92295 0.92366 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.20 8.84 71.98 0.64 -4.56 16 2 C -0.10 -3.03 5.41 30.59 0.17 -2.86 16 3 C 0.10 2.79 1.56 44.91 0.07 2.86 16 4 H 0.06 1.44 6.33 -2.38 -0.02 1.42 16 5 N -0.68 -23.77 5.53 -469.45 -2.60 -26.36 16 6 C 0.10 3.63 1.82 44.91 0.08 3.71 16 7 H 0.07 2.69 5.65 -2.38 -0.01 2.68 16 8 C -0.18 -4.99 9.14 71.98 0.66 -4.33 16 9 C -0.01 -0.27 3.72 29.85 0.11 -0.16 16 10 C -0.48 -27.65 9.39 25.60 0.24 -27.41 16 11 H 0.05 2.97 6.33 -2.91 -0.02 2.95 16 12 C 0.00 -0.28 5.47 84.65 0.46 0.18 16 13 N -0.96 -61.82 13.96 21.45 0.30 -61.52 16 14 Si 0.94 45.63 27.47 68.60 1.88 47.52 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 17 H -0.25 -11.13 6.54 99.48 0.65 -10.47 16 18 C -0.12 -2.85 2.01 -10.70 -0.02 -2.88 16 19 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 20 C -0.11 -2.05 4.88 30.72 0.15 -1.90 16 21 C -0.15 -2.37 6.14 30.68 0.19 -2.19 16 22 C 0.05 0.87 6.84 72.01 0.49 1.37 16 23 O -0.40 -9.72 10.77 -148.98 -1.60 -11.33 16 24 C 0.07 1.54 5.89 72.01 0.42 1.96 16 25 H 0.05 2.09 4.39 -2.39 -0.01 2.08 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.47 8.14 -2.38 -0.02 1.46 16 29 H 0.08 1.88 6.24 -2.39 -0.01 1.86 16 30 H 0.33 11.15 6.16 -89.69 -0.55 10.60 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.54 6.77 -2.39 -0.02 1.52 16 34 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 35 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 36 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.35 6.50 -2.39 -0.02 1.33 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.08 2.10 6.38 -2.39 -0.02 2.08 16 Total: -1.00 -67.22 325.11 2.00 -65.22 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.35 Total: 22.69 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 3.66 Total: -36.22 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -2.30 Total: -87.88 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.60 Total: -11.33 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.52 kcal Total: -67.22 2.00 -65.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723999502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.524 kcal (2) G-P(sol) polarization free energy of solvation -67.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds