Wall clock time and date at job start Mon Mar 30 2020 06:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 N 1.46497 * 109.47377 * 185.35487 * 3 2 1 5 5 C 1.36943 * 120.00136 * 85.06287 * 4 3 2 6 6 H 1.07995 * 119.99891 * 167.42573 * 5 4 3 7 7 C 1.38812 * 119.99346 * 347.42434 * 5 4 3 8 8 N 1.31621 * 120.00453 * 10.04234 * 7 5 4 9 9 Si 1.86801 * 119.99333 * 190.04211 * 7 5 4 10 10 H 1.48496 * 109.47386 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47052 * 120.00367 * 9 7 5 12 12 H 1.48503 * 109.47134 * 239.99802 * 9 7 5 13 13 C 1.46499 * 120.00088 * 265.06640 * 4 3 2 14 14 C 1.53005 * 109.46944 * 275.01715 * 13 4 3 15 15 H 1.08993 * 109.54292 * 54.50184 * 14 13 4 16 16 C 1.53179 * 109.54343 * 174.68221 * 14 13 4 17 17 C 1.53095 * 109.16554 * 176.85107 * 16 14 13 18 18 H 1.09001 * 109.47890 * 62.38096 * 17 16 14 19 19 C 1.52997 * 109.48191 * 182.40443 * 17 16 14 20 20 O 1.42900 * 109.41128 * 302.38857 * 17 16 14 21 21 C 1.42903 * 114.10164 * 61.15706 * 20 17 16 22 22 H 1.09005 * 109.48185 * 58.82106 * 21 20 17 23 23 C 1.52992 * 109.48633 * 178.84852 * 21 20 17 24 24 C 1.53114 * 109.48618 * 298.89039 * 21 20 17 25 25 H 1.09005 * 109.47165 * 299.99469 * 1 2 3 26 26 H 1.09003 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47115 * 59.99788 * 1 2 3 28 28 H 1.09004 * 109.47544 * 120.00239 * 2 1 3 29 29 H 1.09004 * 109.47034 * 239.99992 * 2 1 3 30 30 H 1.09000 * 109.47238 * 305.35948 * 3 2 1 31 31 H 1.09000 * 109.46896 * 65.35859 * 3 2 1 32 32 H 0.97000 * 119.99910 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47438 * 35.01944 * 13 4 3 34 34 H 1.09005 * 109.47228 * 155.02455 * 13 4 3 35 35 H 1.09007 * 109.52041 * 296.74974 * 16 14 13 36 36 H 1.08990 * 109.52695 * 56.87447 * 16 14 13 37 37 H 1.09001 * 109.47240 * 59.99895 * 19 17 16 38 38 H 1.09004 * 109.46976 * 179.97438 * 19 17 16 39 39 H 1.09001 * 109.47117 * 300.00185 * 19 17 16 40 40 H 1.09003 * 109.46989 * 59.99531 * 23 21 20 41 41 H 1.08997 * 109.47635 * 180.02562 * 23 21 20 42 42 H 1.09000 * 109.46896 * 300.00179 * 23 21 20 43 43 H 1.09001 * 109.44915 * 297.61299 * 24 21 20 44 44 H 1.08992 * 109.59668 * 177.41793 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4993 1.4445 -0.1289 5 6 4.0773 1.3802 -1.3687 6 1 5.1314 1.5844 -1.4843 7 6 3.3080 1.0526 -2.4768 8 7 1.9969 0.9976 -2.3749 9 14 4.1339 0.6897 -4.1126 10 1 5.6058 0.8174 -3.9632 11 1 3.7983 -0.6922 -4.5407 12 1 3.6539 1.6546 -5.1343 13 6 4.3403 1.5153 1.0685 14 6 4.5208 2.9781 1.4792 15 1 3.5439 3.4465 1.5984 16 6 5.2875 3.0476 2.8035 17 6 5.5319 4.5148 3.1663 18 1 4.5757 5.0176 3.3110 19 6 6.3494 4.5918 4.4573 20 8 6.2506 5.1522 2.1084 21 6 5.5615 5.1596 0.8565 22 1 4.6056 5.6710 0.9707 23 6 6.4086 5.8889 -0.1881 24 6 5.3162 3.7189 0.3999 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6004 1.9833 -0.8381 31 1 1.7571 1.9278 0.9341 32 1 1.4595 0.7690 -3.1494 33 1 3.8635 0.9661 1.8804 34 1 5.3144 1.0751 0.8550 35 1 4.7012 2.5710 3.5893 36 1 6.2427 2.5333 2.6990 37 1 7.3057 4.0892 4.3123 38 1 6.5237 5.6364 4.7151 39 1 5.8016 4.1045 5.2639 40 1 7.3642 5.3772 -0.3025 41 1 5.8826 5.8949 -1.1427 42 1 6.5824 6.9147 0.1370 43 1 6.2726 3.2195 0.2449 44 1 4.7506 3.7219 -0.5317 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724860284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:31 Heat of formation + Delta-G solvation = -55.961237 kcal Electronic energy + Delta-G solvation = -20565.364189 eV Core-core repulsion = 17710.293083 eV Total energy + Delta-G solvation = -2855.071106 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64230 -38.17888 -35.33829 -34.55422 -33.46184 -32.47204 -30.54679 -27.56489 -27.19937 -27.01752 -23.88491 -22.68405 -22.23567 -21.53387 -20.69006 -18.66545 -17.43306 -17.03010 -16.53827 -15.96452 -15.61491 -15.42324 -14.96389 -14.91284 -14.36126 -14.27281 -13.67162 -13.45211 -13.34960 -13.09983 -12.93981 -12.84310 -12.79607 -12.68903 -12.63107 -12.49354 -12.07870 -11.99202 -11.89553 -11.79510 -11.65678 -11.44178 -11.23985 -11.16539 -11.07139 -10.35242 -10.17361 -8.63120 -7.56285 -5.06994 1.47352 1.51304 1.57930 2.56846 2.81069 3.41415 3.64955 3.82541 4.02022 4.06979 4.10919 4.27579 4.33420 4.45172 4.56516 4.58802 4.67788 4.72510 4.74932 4.79452 4.87516 4.89182 4.94363 5.02515 5.03193 5.08949 5.14101 5.18364 5.20476 5.25241 5.29682 5.40813 5.49146 5.57197 5.60830 5.63117 5.69854 6.03991 6.20069 6.41623 6.57902 7.34674 8.04925 8.43645 9.31307 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020066 B = 0.006780 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.071028 B = 4128.507738 C = 5103.902987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C 0.173 3.827 4 N -0.615 5.615 5 C -0.234 4.234 6 H 0.069 0.931 7 C -0.054 4.054 8 N -0.917 5.917 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.298 1.298 12 H -0.297 1.297 13 C 0.158 3.842 14 C -0.101 4.101 15 H 0.049 0.951 16 C -0.134 4.134 17 C 0.082 3.918 18 H 0.054 0.946 19 C -0.137 4.137 20 O -0.393 6.393 21 C 0.089 3.911 22 H 0.049 0.951 23 C -0.138 4.138 24 C -0.123 4.123 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.011 0.989 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.004 0.996 32 H 0.240 0.760 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 6.230 10.544 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.146 4.146 3 C 0.048 3.952 4 N -0.336 5.336 5 C -0.364 4.364 6 H 0.087 0.913 7 C -0.248 4.248 8 N -0.566 5.566 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.226 1.226 12 H -0.225 1.225 13 C 0.032 3.968 14 C -0.122 4.122 15 H 0.067 0.933 16 C -0.172 4.172 17 C 0.025 3.975 18 H 0.072 0.928 19 C -0.194 4.194 20 O -0.313 6.313 21 C 0.031 3.969 22 H 0.067 0.933 23 C -0.195 4.195 24 C -0.161 4.161 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.022 0.978 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.809 6.272 10.438 13.093 hybrid contribution -0.095 -0.616 -1.326 1.465 sum 4.714 5.656 9.112 11.715 Atomic orbital electron populations 1.21463 0.96223 0.99982 1.00474 1.21910 0.95061 0.99629 0.97964 1.20991 0.82448 0.94947 0.96776 1.44305 1.02043 1.85760 1.01521 1.19465 0.93537 1.37989 0.85388 0.91337 1.25384 0.96285 1.02664 1.00425 1.70314 1.03348 1.55006 1.27957 0.85398 0.78062 0.76765 0.81422 1.20116 1.22583 1.22484 1.20850 0.93975 0.93627 0.88373 1.21728 0.97597 0.98318 0.94601 0.93258 1.22182 1.00762 0.97273 0.97032 1.22215 0.95380 0.91877 0.88049 0.92839 1.21747 1.00369 1.02949 0.94313 1.87839 1.46214 1.78635 1.18619 1.22095 0.95175 0.95187 0.84408 0.93290 1.21718 1.00045 1.00483 0.97269 1.22013 0.99473 0.95333 0.99249 0.93275 0.93759 0.93863 0.96985 0.93219 0.90009 0.97760 0.94957 0.94106 0.94200 0.89900 0.91617 0.92131 0.91656 0.89322 0.92230 0.90908 0.91042 0.93148 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.91 71.98 0.71 -4.10 16 2 C -0.11 -4.87 5.43 30.59 0.17 -4.71 16 3 C 0.17 8.32 4.99 86.38 0.43 8.75 16 4 N -0.61 -29.66 2.35 -702.01 -1.65 -31.31 16 5 C -0.23 -12.29 8.22 84.03 0.69 -11.60 16 6 H 0.07 3.58 7.73 -2.91 -0.02 3.56 16 7 C -0.05 -2.90 5.13 84.86 0.43 -2.47 16 8 N -0.92 -50.46 7.60 21.65 0.16 -50.30 16 9 Si 0.95 44.75 29.57 68.60 2.03 46.78 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 12 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 13 C 0.16 6.34 5.11 86.38 0.44 6.78 16 14 C -0.10 -3.52 2.48 -10.67 -0.03 -3.55 16 15 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 16 C -0.13 -3.69 4.71 30.69 0.14 -3.55 16 17 C 0.08 2.11 3.26 30.62 0.10 2.21 16 18 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 19 C -0.14 -2.66 9.56 71.98 0.69 -1.97 16 20 O -0.39 -11.81 10.05 -148.98 -1.50 -13.30 16 21 C 0.09 2.73 3.26 30.63 0.10 2.83 16 22 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 23 C -0.14 -3.68 9.57 71.98 0.69 -2.99 16 24 C -0.12 -4.40 4.15 30.69 0.13 -4.27 16 25 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.05 2.65 6.24 -2.38 -0.01 2.63 16 30 H 0.08 4.46 5.74 -2.39 -0.01 4.44 16 31 H 0.00 0.19 8.03 -2.39 -0.02 0.17 16 32 H 0.24 13.10 8.31 -92.71 -0.77 12.33 16 33 H 0.04 1.55 8.11 -2.39 -0.02 1.54 16 34 H 0.04 1.62 8.00 -2.38 -0.02 1.60 16 35 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 2.55 6.86 -2.39 -0.02 2.54 16 Total: -1.00 -56.86 335.96 4.66 -52.20 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.91 Total: 14.56 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 4.70 Total: -18.63 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -1.49 Total: -81.61 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.50 Total: -13.30 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -56.86 4.66 -52.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724860284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.761 kcal (2) G-P(sol) polarization free energy of solvation -56.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds