Wall clock time and date at job start Mon Mar 30 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 N 1.46499 * 109.46691 * 180.02562 * 3 2 1 5 5 C 1.36934 * 120.00626 * 89.99677 * 4 3 2 6 6 H 1.08004 * 119.99766 * 22.85560 * 5 4 3 7 7 C 1.38810 * 120.00322 * 202.85973 * 5 4 3 8 8 N 1.31617 * 119.99912 * 310.95363 * 7 5 4 9 9 Si 1.86801 * 119.99813 * 131.23287 * 7 5 4 10 10 H 1.48498 * 109.47436 * 90.00016 * 9 7 5 11 11 H 1.48500 * 109.46777 * 209.99812 * 9 7 5 12 12 H 1.48496 * 109.47307 * 329.99626 * 9 7 5 13 13 C 1.46503 * 119.99708 * 269.99766 * 4 3 2 14 14 C 1.53005 * 109.47100 * 276.04618 * 13 4 3 15 15 C 1.53182 * 109.54142 * 302.81576 * 14 13 4 16 16 C 1.53104 * 109.15936 * 183.24151 * 15 14 13 17 17 H 1.09000 * 109.41241 * 297.49076 * 16 15 14 18 18 C 1.52999 * 109.48592 * 177.49942 * 16 15 14 19 19 O 1.42910 * 109.48681 * 57.46904 * 16 15 14 20 20 C 1.42897 * 114.09718 * 298.89444 * 19 16 15 21 21 H 1.09007 * 109.48856 * 181.14487 * 20 19 16 22 22 C 1.53004 * 109.48199 * 301.16988 * 20 19 16 23 23 C 1.53088 * 109.42001 * 61.15798 * 20 19 16 24 24 H 1.08996 * 109.47329 * 59.99853 * 1 2 3 25 25 H 1.08994 * 109.47495 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47144 * 300.00161 * 1 2 3 27 27 H 1.09000 * 109.46693 * 239.99765 * 2 1 3 28 28 H 1.09004 * 109.46777 * 119.99807 * 2 1 3 29 29 H 1.08993 * 109.47649 * 59.99934 * 3 2 1 30 30 H 1.08999 * 109.46754 * 299.99393 * 3 2 1 31 31 H 0.97003 * 120.00230 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47182 * 36.04495 * 13 4 3 33 33 H 1.09003 * 109.47213 * 156.04842 * 13 4 3 34 34 H 1.08993 * 109.54310 * 62.98748 * 14 13 4 35 35 H 1.09004 * 109.52164 * 303.05344 * 15 14 13 36 36 H 1.08997 * 109.52717 * 63.24423 * 15 14 13 37 37 H 1.08999 * 109.47250 * 299.96927 * 18 16 15 38 38 H 1.08999 * 109.46755 * 59.96584 * 18 16 15 39 39 H 1.09000 * 109.46692 * 179.97438 * 18 16 15 40 40 H 1.09003 * 109.47324 * 179.97438 * 22 20 19 41 41 H 1.08995 * 109.47447 * 299.94928 * 22 20 19 42 42 H 1.09005 * 109.46723 * 59.95054 * 22 20 19 43 43 H 1.09001 * 109.52612 * 182.48596 * 23 20 19 44 44 H 1.08999 * 109.52349 * 62.29152 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1893 1.4425 -1.1867 6 1 3.7126 1.8059 -2.0851 7 6 5.4956 0.9754 -1.2345 8 7 6.3794 1.4020 -0.3575 9 14 6.0009 -0.2526 -2.5482 10 1 6.4809 0.4768 -3.7494 11 1 7.0900 -1.1163 -2.0256 12 1 4.8338 -1.0946 -2.9140 13 6 4.2380 1.4422 1.2679 14 6 4.3617 2.8767 1.7856 15 6 5.0549 3.7443 0.7305 16 6 5.2469 5.1569 1.2888 17 1 4.2727 5.6015 1.4924 18 6 5.9946 6.0131 0.2647 19 8 6.0037 5.0924 2.4993 20 6 5.3801 4.3339 3.5375 21 1 6.0085 4.3509 4.4280 22 6 4.0150 4.9426 3.8647 23 6 5.1955 2.8877 3.0705 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9562 -0.8900 31 1 7.2924 1.0760 -0.3910 32 1 3.7003 0.8375 1.9981 33 1 5.2329 1.0250 1.1125 34 1 3.3690 3.2768 1.9917 35 1 6.0269 3.3149 0.4873 36 1 4.4393 3.7868 -0.1679 37 1 6.9685 5.5682 0.0609 38 1 5.4172 6.0622 -0.6585 39 1 6.1307 7.0189 0.6622 40 1 3.5393 4.3636 4.6563 41 1 4.1466 5.9723 4.1971 42 1 3.3868 4.9258 2.9740 43 1 4.6802 2.3181 3.8439 44 1 6.1703 2.4405 2.8760 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724865191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:27 Heat of formation + Delta-G solvation = -39.538494 kcal Electronic energy + Delta-G solvation = -20993.279933 eV Core-core repulsion = 18138.920971 eV Total energy + Delta-G solvation = -2854.358962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.23975 -36.36908 -33.56254 -32.85059 -32.20098 -30.61195 -29.07413 -25.91941 -25.58134 -25.54355 -22.43051 -21.61825 -20.78568 -19.56976 -18.32007 -16.75600 -15.69800 -15.28467 -14.81478 -14.43072 -14.07015 -13.77723 -13.68436 -13.27788 -12.91086 -12.78715 -12.19123 -12.10490 -12.03498 -11.63689 -11.60694 -11.47738 -11.18714 -10.98594 -10.87319 -10.64835 -10.61510 -10.42453 -10.30330 -10.24780 -9.86061 -9.80025 -9.67742 -9.33826 -9.01835 -8.55512 -7.90040 -6.88633 -6.05783 -2.96358 3.41191 3.55681 3.63286 4.38513 4.54314 5.04424 5.30043 5.40676 5.51278 5.59888 5.63860 5.66908 5.76188 5.82553 5.91979 5.97161 6.03639 6.09718 6.17217 6.23266 6.25789 6.32086 6.40956 6.44672 6.51389 6.55381 6.59955 6.65675 6.70757 6.78062 6.95091 6.96650 7.05533 7.16175 7.35517 7.41330 7.77106 7.92374 7.99028 8.08164 8.41174 9.20050 9.89020 10.43718 10.98221 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016269 B = 0.008617 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.633011 B = 3248.468019 C = 4301.609278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.159 3.841 4 N -0.597 5.597 5 C -0.278 4.278 6 H 0.074 0.926 7 C 0.044 3.956 8 N -0.835 5.835 9 Si 0.826 3.174 10 H -0.291 1.291 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.137 3.863 14 C -0.089 4.089 15 C -0.125 4.125 16 C 0.077 3.923 17 H 0.039 0.961 18 C -0.137 4.137 19 O -0.382 6.382 20 C 0.091 3.909 21 H 0.087 0.913 22 C -0.182 4.182 23 C -0.139 4.139 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.257 0.743 32 H 0.006 0.994 33 H 0.115 0.885 34 H 0.034 0.966 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 4.306 6.036 8.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.032 3.968 4 N -0.317 5.317 5 C -0.404 4.404 6 H 0.092 0.908 7 C -0.156 4.156 8 N -0.475 5.475 9 Si 0.651 3.349 10 H -0.218 1.218 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.012 3.988 14 C -0.110 4.110 15 C -0.163 4.163 16 C 0.020 3.980 17 H 0.057 0.943 18 C -0.194 4.194 19 O -0.302 6.302 20 C 0.033 3.967 21 H 0.105 0.895 22 C -0.240 4.240 23 C -0.178 4.178 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.133 0.867 34 H 0.052 0.948 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.295 4.412 6.089 8.659 hybrid contribution -0.086 -0.870 -0.694 1.116 sum -4.381 3.542 5.395 7.800 Atomic orbital electron populations 1.21734 0.97565 1.00343 1.00833 1.22139 0.93383 1.01182 1.01683 1.20678 0.84624 0.93248 0.98233 1.44020 0.99377 1.85783 1.02557 1.18804 0.96889 1.37990 0.86743 0.90785 1.24921 0.95300 0.99537 0.95874 1.70213 1.02208 1.36834 1.38272 0.87406 0.77580 0.86196 0.83686 1.21787 1.21667 1.20892 1.21723 0.99794 0.92124 0.85196 1.21569 0.95631 1.00412 0.93373 1.22175 1.05627 0.90922 0.97565 1.22306 0.93146 0.98128 0.84406 0.94335 1.21678 1.01460 0.98495 0.97769 1.87864 1.47159 1.72544 1.22665 1.22023 0.93148 0.91349 0.90142 0.89544 1.22434 0.98810 1.00644 1.02090 1.22157 1.01742 0.95483 0.98384 0.93318 0.93871 0.93596 0.92036 0.93215 0.95058 0.94182 0.93293 0.97599 0.86739 0.94755 0.86652 0.91080 0.91910 0.91630 0.93487 0.92261 0.92871 0.91693 0.92822 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.14 -2.62 6.26 -26.73 -0.17 -2.79 16 3 C 0.16 3.19 5.69 -4.04 -0.02 3.17 16 4 N -0.60 -13.87 2.13 -173.24 -0.37 -14.24 16 5 C -0.28 -7.13 7.91 -15.06 -0.12 -7.25 16 6 H 0.07 1.95 8.05 -52.48 -0.42 1.52 16 7 C 0.04 1.15 4.92 -17.43 -0.09 1.07 16 8 N -0.84 -21.54 8.20 55.49 0.46 -21.09 16 9 Si 0.83 20.12 29.69 -169.99 -5.05 15.07 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.14 3.09 4.85 -4.04 -0.02 3.07 16 14 C -0.09 -1.79 2.22 -90.43 -0.20 -1.99 16 15 C -0.13 -2.67 3.61 -26.58 -0.10 -2.77 16 16 C 0.08 1.44 2.93 -26.68 -0.08 1.36 16 17 H 0.04 0.70 6.34 -51.93 -0.33 0.37 16 18 C -0.14 -2.31 9.57 37.16 0.36 -1.96 16 19 O -0.38 -7.23 10.24 -35.23 -0.36 -7.59 16 20 C 0.09 1.50 3.91 -26.68 -0.10 1.40 16 21 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 22 C -0.18 -2.64 8.65 37.16 0.32 -2.32 16 23 C -0.14 -2.50 4.93 -26.59 -0.13 -2.63 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 30 H 0.04 0.80 8.03 -51.93 -0.42 0.38 16 31 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 32 H 0.01 0.12 8.12 -51.93 -0.42 -0.30 16 33 H 0.12 2.89 4.91 -51.93 -0.26 2.63 16 34 H 0.03 0.69 6.62 -51.93 -0.34 0.34 16 35 H 0.12 2.81 5.72 -51.93 -0.30 2.51 16 36 H 0.07 1.68 6.83 -51.93 -0.35 1.33 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 1.02 4.98 -51.93 -0.26 0.76 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 328.79 15.07 4.95 4.95 Total: -1.00 -25.74 328.79 -8.50 -34.23 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.15 Total: 2.08 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 0.02 Total: -13.42 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.09 Total: -35.33 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.36 Total: -7.59 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.05 Total: 15.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -25.74 -8.50 -34.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724865191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.304 kcal (2) G-P(sol) polarization free energy of solvation -25.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds