Wall clock time and date at job start Mon Mar 30 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 N 1.46499 * 109.46691 * 180.02562 * 3 2 1 5 5 C 1.36934 * 120.00626 * 89.99677 * 4 3 2 6 6 H 1.08004 * 119.99766 * 22.85560 * 5 4 3 7 7 C 1.38810 * 120.00322 * 202.85973 * 5 4 3 8 8 N 1.31617 * 119.99912 * 310.95363 * 7 5 4 9 9 Si 1.86801 * 119.99813 * 131.23287 * 7 5 4 10 10 H 1.48498 * 109.47436 * 90.00016 * 9 7 5 11 11 H 1.48500 * 109.46777 * 209.99812 * 9 7 5 12 12 H 1.48496 * 109.47307 * 329.99626 * 9 7 5 13 13 C 1.46503 * 119.99708 * 269.99766 * 4 3 2 14 14 C 1.53005 * 109.47100 * 276.04618 * 13 4 3 15 15 C 1.53182 * 109.54142 * 302.81576 * 14 13 4 16 16 C 1.53104 * 109.15936 * 183.24151 * 15 14 13 17 17 H 1.09000 * 109.41241 * 297.49076 * 16 15 14 18 18 C 1.52999 * 109.48592 * 177.49942 * 16 15 14 19 19 O 1.42910 * 109.48681 * 57.46904 * 16 15 14 20 20 C 1.42897 * 114.09718 * 298.89444 * 19 16 15 21 21 H 1.09007 * 109.48856 * 181.14487 * 20 19 16 22 22 C 1.53004 * 109.48199 * 301.16988 * 20 19 16 23 23 C 1.53088 * 109.42001 * 61.15798 * 20 19 16 24 24 H 1.08996 * 109.47329 * 59.99853 * 1 2 3 25 25 H 1.08994 * 109.47495 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47144 * 300.00161 * 1 2 3 27 27 H 1.09000 * 109.46693 * 239.99765 * 2 1 3 28 28 H 1.09004 * 109.46777 * 119.99807 * 2 1 3 29 29 H 1.08993 * 109.47649 * 59.99934 * 3 2 1 30 30 H 1.08999 * 109.46754 * 299.99393 * 3 2 1 31 31 H 0.97003 * 120.00230 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47182 * 36.04495 * 13 4 3 33 33 H 1.09003 * 109.47213 * 156.04842 * 13 4 3 34 34 H 1.08993 * 109.54310 * 62.98748 * 14 13 4 35 35 H 1.09004 * 109.52164 * 303.05344 * 15 14 13 36 36 H 1.08997 * 109.52717 * 63.24423 * 15 14 13 37 37 H 1.08999 * 109.47250 * 299.96927 * 18 16 15 38 38 H 1.08999 * 109.46755 * 59.96584 * 18 16 15 39 39 H 1.09000 * 109.46692 * 179.97438 * 18 16 15 40 40 H 1.09003 * 109.47324 * 179.97438 * 22 20 19 41 41 H 1.08995 * 109.47447 * 299.94928 * 22 20 19 42 42 H 1.09005 * 109.46723 * 59.95054 * 22 20 19 43 43 H 1.09001 * 109.52612 * 182.48596 * 23 20 19 44 44 H 1.08999 * 109.52349 * 62.29152 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1893 1.4425 -1.1867 6 1 3.7126 1.8059 -2.0851 7 6 5.4956 0.9754 -1.2345 8 7 6.3794 1.4020 -0.3575 9 14 6.0009 -0.2526 -2.5482 10 1 6.4809 0.4768 -3.7494 11 1 7.0900 -1.1163 -2.0256 12 1 4.8338 -1.0946 -2.9140 13 6 4.2380 1.4422 1.2679 14 6 4.3617 2.8767 1.7856 15 6 5.0549 3.7443 0.7305 16 6 5.2469 5.1569 1.2888 17 1 4.2727 5.6015 1.4924 18 6 5.9946 6.0131 0.2647 19 8 6.0037 5.0924 2.4993 20 6 5.3801 4.3339 3.5375 21 1 6.0085 4.3509 4.4280 22 6 4.0150 4.9426 3.8647 23 6 5.1955 2.8877 3.0705 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9562 -0.8900 31 1 7.2924 1.0760 -0.3910 32 1 3.7003 0.8375 1.9981 33 1 5.2329 1.0250 1.1125 34 1 3.3690 3.2768 1.9917 35 1 6.0269 3.3149 0.4873 36 1 4.4393 3.7868 -0.1679 37 1 6.9685 5.5682 0.0609 38 1 5.4172 6.0622 -0.6585 39 1 6.1307 7.0189 0.6622 40 1 3.5393 4.3636 4.6563 41 1 4.1466 5.9723 4.1971 42 1 3.3868 4.9258 2.9740 43 1 4.6802 2.3181 3.8439 44 1 6.1703 2.4405 2.8760 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724865191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:26 Heat of formation + Delta-G solvation = -51.212750 kcal Electronic energy + Delta-G solvation = -20993.786167 eV Core-core repulsion = 18138.920971 eV Total energy + Delta-G solvation = -2854.865196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.72312 -38.08394 -35.08675 -34.39474 -33.83566 -32.30444 -30.46086 -27.39715 -27.29179 -27.13359 -24.05140 -23.09337 -22.30771 -21.21941 -19.85462 -18.64363 -17.08913 -16.85692 -16.58838 -16.06710 -15.64958 -15.45002 -15.13683 -14.83607 -14.51021 -14.22104 -13.73821 -13.60716 -13.42826 -13.33233 -12.99586 -12.74313 -12.73487 -12.62256 -12.47859 -12.32891 -12.19593 -12.14978 -11.95170 -11.73687 -11.62301 -11.37372 -11.34508 -10.96254 -10.62434 -10.07397 -9.88778 -8.73809 -8.03818 -4.93657 1.41504 1.54162 1.61714 2.55933 3.01278 3.03996 3.72989 4.06682 4.09365 4.18800 4.27857 4.31622 4.42593 4.45885 4.49074 4.61291 4.66587 4.72343 4.79557 4.81544 4.84396 4.90964 4.98551 4.99667 5.10661 5.17163 5.19665 5.26416 5.27540 5.30544 5.42612 5.45938 5.46757 5.61066 5.67836 5.72264 5.85398 6.00571 6.20745 6.50094 6.56247 7.24442 8.00012 8.49860 8.97852 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.016269 B = 0.008617 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.633011 B = 3248.468019 C = 4301.609278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.136 4.136 3 C 0.157 3.843 4 N -0.609 5.609 5 C -0.279 4.279 6 H 0.062 0.938 7 C 0.013 3.987 8 N -0.842 5.842 9 Si 0.869 3.131 10 H -0.295 1.295 11 H -0.295 1.295 12 H -0.291 1.291 13 C 0.138 3.862 14 C -0.081 4.081 15 C -0.113 4.113 16 C 0.082 3.918 17 H 0.051 0.949 18 C -0.134 4.134 19 O -0.396 6.396 20 C 0.086 3.914 21 H 0.109 0.891 22 C -0.175 4.175 23 C -0.134 4.134 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.253 0.747 32 H 0.013 0.987 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.074 0.926 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.008 5.036 7.523 10.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.031 3.969 4 N -0.330 5.330 5 C -0.406 4.406 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.482 5.482 9 Si 0.696 3.304 10 H -0.222 1.222 11 H -0.222 1.222 12 H -0.217 1.217 13 C 0.012 3.988 14 C -0.102 4.102 15 C -0.151 4.151 16 C 0.025 3.975 17 H 0.069 0.931 18 C -0.191 4.191 19 O -0.316 6.316 20 C 0.028 3.972 21 H 0.127 0.873 22 C -0.232 4.232 23 C -0.172 4.172 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.660 5.137 7.579 10.764 hybrid contribution 0.313 -1.111 -1.148 1.628 sum -5.347 4.026 6.431 9.282 Atomic orbital electron populations 1.21652 0.94315 1.01730 1.01902 1.21993 0.96180 0.99255 1.00161 1.20814 0.82824 0.94542 0.98700 1.44177 1.00730 1.86076 1.02057 1.18798 0.96863 1.37639 0.87317 0.92036 1.25222 0.95656 1.00592 0.97244 1.70335 1.01934 1.36976 1.39002 0.86739 0.76612 0.84785 0.82248 1.22222 1.22189 1.21744 1.21594 0.98330 0.93667 0.85165 1.21421 0.96221 0.98480 0.94056 1.21929 1.03172 0.93050 0.96986 1.22220 0.94067 0.96455 0.84795 0.93127 1.21665 1.00456 0.99279 0.97732 1.87857 1.47942 1.72834 1.22967 1.22252 0.94940 0.89925 0.90064 0.87336 1.22357 0.97046 1.01685 1.02126 1.22095 1.00198 0.97152 0.97770 0.92690 0.92366 0.92083 0.94435 0.93861 0.93624 0.94519 0.93713 0.96886 0.89486 0.94068 0.89869 0.94045 0.93431 0.91207 0.91237 0.90211 0.91510 0.93073 0.90718 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.14 -4.82 6.26 30.60 0.19 -4.63 16 3 C 0.16 6.18 5.69 86.38 0.49 6.67 16 4 N -0.61 -28.52 2.13 -702.00 -1.49 -30.02 16 5 C -0.28 -14.60 7.91 84.03 0.67 -13.93 16 6 H 0.06 3.33 8.05 -2.91 -0.02 3.30 16 7 C 0.01 0.68 4.92 84.86 0.42 1.10 16 8 N -0.84 -44.67 8.20 21.65 0.18 -44.49 16 9 Si 0.87 42.41 29.69 68.60 2.04 44.45 16 10 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 13 C 0.14 6.22 4.85 86.38 0.42 6.64 16 14 C -0.08 -3.22 2.22 -10.67 -0.02 -3.24 16 15 C -0.11 -4.88 3.61 30.69 0.11 -4.77 16 16 C 0.08 2.97 2.93 30.63 0.09 3.06 16 17 H 0.05 1.73 6.34 -2.39 -0.02 1.72 16 18 C -0.13 -4.43 9.57 71.98 0.69 -3.74 16 19 O -0.40 -14.33 10.24 -148.98 -1.53 -15.85 16 20 C 0.09 2.61 3.91 30.62 0.12 2.73 16 21 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 22 C -0.17 -4.46 8.65 71.98 0.62 -3.84 16 23 C -0.13 -4.62 4.93 30.68 0.15 -4.47 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.65 8.07 -2.39 -0.02 1.63 16 30 H 0.04 1.45 8.03 -2.39 -0.02 1.43 16 31 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 32 H 0.01 0.55 8.12 -2.39 -0.02 0.53 16 33 H 0.09 4.48 4.91 -2.39 -0.01 4.47 16 34 H 0.04 1.58 6.62 -2.39 -0.02 1.57 16 35 H 0.08 4.17 5.72 -2.38 -0.01 4.15 16 36 H 0.04 1.99 6.83 -2.39 -0.02 1.98 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.05 1.45 4.98 -2.38 -0.01 1.44 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -55.65 328.79 4.78 -50.87 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.93 Total: 16.45 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 4.66 Total: -21.40 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.32 Total: -74.51 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -1.53 Total: -15.85 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.04 Total: 44.45 kcal Total: -55.65 4.78 -50.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724865191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.344 kcal (2) G-P(sol) polarization free energy of solvation -55.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds