Wall clock time and date at job start Mon Mar 30 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 H 1.08993 * 109.47342 * 306.28598 * 3 2 1 5 5 C 1.50700 * 109.47195 * 186.28070 * 3 2 1 6 6 H 1.08000 * 120.00525 * 244.85917 * 5 3 2 7 7 C 1.37885 * 119.99536 * 65.13024 * 5 3 2 8 8 N 1.31507 * 119.99570 * 193.01582 * 7 5 3 9 9 Si 1.86801 * 119.99887 * 13.01846 * 7 5 3 10 10 H 1.48503 * 109.46692 * 93.46823 * 9 7 5 11 11 H 1.48496 * 109.47050 * 213.46675 * 9 7 5 12 12 H 1.48498 * 109.46939 * 333.46923 * 9 7 5 13 13 N 1.46900 * 109.47278 * 66.28689 * 3 2 1 14 14 C 1.46851 * 111.00162 * 43.27800 * 13 3 2 15 15 C 1.53037 * 109.52503 * 174.16420 * 14 13 3 16 16 C 1.53118 * 109.27826 * 59.17854 * 15 14 13 17 17 C 1.53123 * 109.16174 * 302.34424 * 16 15 14 18 18 C 1.46845 * 110.99904 * 279.07073 * 13 3 2 19 19 H 1.09000 * 109.46390 * 65.82323 * 18 13 3 20 20 C 1.53004 * 109.46145 * 305.85121 * 18 13 3 21 21 H 1.09007 * 109.46762 * 62.34442 * 20 18 13 22 22 C 1.52997 * 109.47414 * 302.34166 * 20 18 13 23 23 C 1.52999 * 109.47118 * 182.33854 * 20 18 13 24 24 O 1.42898 * 109.47112 * 185.00471 * 23 20 18 25 25 H 1.09000 * 109.46973 * 158.74576 * 1 2 3 26 26 H 1.09000 * 109.47618 * 278.74869 * 1 2 3 27 27 H 1.09003 * 109.46742 * 38.74604 * 1 2 3 28 28 H 1.08994 * 109.46982 * 239.99873 * 2 1 3 29 29 H 1.08998 * 109.46678 * 119.99710 * 2 1 3 30 30 H 0.97005 * 119.99668 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46238 * 294.17687 * 14 13 3 32 32 H 1.08993 * 109.46288 * 54.14580 * 14 13 3 33 33 H 1.09001 * 109.50153 * 299.23711 * 15 14 13 34 34 H 1.08999 * 109.53701 * 179.14180 * 15 14 13 35 35 H 1.09001 * 109.52468 * 182.44106 * 16 15 14 36 36 H 1.09004 * 109.57772 * 62.28506 * 16 15 14 37 37 H 1.08997 * 109.50474 * 297.71477 * 17 16 15 38 38 H 1.09000 * 109.53504 * 177.61384 * 17 16 15 39 39 H 1.08999 * 109.47056 * 63.07282 * 22 20 18 40 40 H 1.08996 * 109.46952 * 183.07512 * 22 20 18 41 41 H 1.09006 * 109.46582 * 303.07353 * 22 20 18 42 42 H 1.09003 * 109.47382 * 305.00467 * 23 20 18 43 43 H 1.09000 * 109.47136 * 65.00632 * 23 20 18 44 44 H 0.96701 * 114.00011 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9878 -0.8283 5 6 3.5389 1.4454 -0.1554 6 1 4.1642 1.8126 0.6449 7 6 4.1119 0.9843 -1.3218 8 7 5.4041 0.7446 -1.3695 9 14 3.0527 0.7003 -2.8340 10 1 3.0697 1.9167 -3.6857 11 1 3.5881 -0.4509 -3.6042 12 1 1.6583 0.4095 -2.4141 13 7 1.6781 2.0898 1.2680 14 6 1.9199 1.1923 2.4049 15 6 1.6712 1.9460 3.7134 16 6 0.2268 2.4534 3.7379 17 6 -0.0129 3.3468 2.5176 18 6 0.2846 2.5524 1.2438 19 1 -0.3827 1.6923 1.1880 20 6 0.0657 3.4474 0.0223 21 1 0.2363 2.8699 -0.8864 22 6 1.0430 4.6236 0.0701 23 6 -1.3699 3.9764 0.0283 24 8 -1.6099 4.7163 -1.1704 25 1 -0.3633 -0.9578 -0.3725 26 1 -0.3634 0.1563 1.0157 27 1 -0.3633 0.8015 -0.6432 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8073 0.4206 -2.1901 31 1 1.2449 0.3387 2.3437 32 1 2.9516 0.8420 2.3780 33 1 2.3553 2.7919 3.7818 34 1 1.8359 1.2758 4.5571 35 1 0.0579 3.0279 4.6487 36 1 -0.4585 1.6062 3.7094 37 1 0.6446 4.2146 2.5672 38 1 -1.0515 3.6772 2.5062 39 1 2.0650 4.2494 0.0107 40 1 0.8506 5.2901 -0.7706 41 1 0.9094 5.1691 1.0043 42 1 -2.0655 3.1391 0.0839 43 1 -1.5139 4.6264 0.8914 44 1 -2.5026 5.0826 -1.2345 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829247477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:49 Heat of formation + Delta-G solvation = -46.457033 kcal Electronic energy + Delta-G solvation = -21523.914708 eV Core-core repulsion = 18669.255735 eV Total energy + Delta-G solvation = -2854.658973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.75048 -36.87443 -34.85949 -33.60116 -32.05941 -30.49880 -28.69387 -27.60474 -25.99638 -23.57592 -23.41595 -22.17086 -20.04831 -19.74784 -18.18388 -17.27076 -16.66760 -15.52990 -15.04662 -14.84194 -14.40003 -13.97349 -13.78721 -13.67959 -13.17394 -12.72659 -12.70017 -12.30298 -12.07926 -11.75828 -11.70475 -11.64100 -11.42119 -10.97118 -10.94494 -10.73167 -10.62143 -10.44659 -10.38885 -10.12213 -9.94546 -9.70437 -9.65368 -9.46457 -9.19790 -9.05404 -8.32277 -7.10745 -6.02372 -3.94916 3.32236 3.41114 3.45213 4.29635 4.47688 4.85666 5.08899 5.20222 5.25799 5.31971 5.33613 5.46057 5.59692 5.64934 5.72247 5.82155 5.85108 5.93539 6.03150 6.03391 6.07252 6.18360 6.26451 6.28068 6.29579 6.37550 6.48438 6.54555 6.62670 6.71336 6.73642 6.76171 6.79876 6.96039 7.02671 7.14015 7.30654 7.73552 7.76346 8.07454 8.23034 8.75611 9.11335 9.64024 11.10910 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.009828 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.829750 B = 2848.364009 C = 3615.746331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.159 4.159 3 C 0.184 3.816 4 H 0.043 0.957 5 C -0.497 4.497 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.855 3.145 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.253 1.253 13 N -0.506 5.506 14 C 0.061 3.939 15 C -0.118 4.118 16 C -0.117 4.117 17 C -0.115 4.115 18 C 0.074 3.926 19 H 0.050 0.950 20 C -0.087 4.087 21 H 0.080 0.920 22 C -0.134 4.134 23 C 0.080 3.920 24 O -0.571 6.571 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.262 0.738 31 H 0.025 0.975 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.135 3.815 6.551 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.198 4.198 3 C 0.077 3.923 4 H 0.060 0.940 5 C -0.535 4.535 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.682 3.318 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.177 1.177 13 N -0.230 5.230 14 C -0.067 4.067 15 C -0.156 4.156 16 C -0.155 4.155 17 C -0.153 4.153 18 C -0.035 4.035 19 H 0.068 0.932 20 C -0.106 4.106 21 H 0.099 0.901 22 C -0.191 4.191 23 C 0.002 3.998 24 O -0.375 6.375 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -13.042 3.992 6.385 15.060 hybrid contribution -1.594 -0.866 -0.944 2.045 sum -14.636 3.126 5.441 15.925 Atomic orbital electron populations 1.22188 0.98758 1.00224 1.00226 1.22691 0.92761 1.02462 1.01930 1.19864 0.96949 0.87908 0.87594 0.93978 1.20898 0.89006 1.41211 1.02367 0.90292 1.24858 0.94630 0.94864 0.98450 1.69945 1.10902 1.45329 1.27336 0.87343 0.82345 0.77923 0.84141 1.20654 1.21606 1.17673 1.62069 1.17654 1.39605 1.03686 1.22014 1.01708 0.93264 0.89687 1.21623 0.96197 1.00405 0.97326 1.21551 0.97363 0.98954 0.97625 1.21757 1.00121 0.99158 0.94264 1.21859 0.92038 0.96350 0.93239 0.93248 1.21218 0.92609 0.97692 0.99069 0.90147 1.21678 1.00970 0.96453 1.00002 1.22340 0.97342 0.93883 0.86190 1.86537 1.35930 1.73020 1.41988 0.94394 0.93140 0.93239 0.92325 0.92131 0.92859 0.95646 0.89889 0.91397 0.92647 0.92772 0.92988 0.90866 0.92769 0.90120 0.93658 0.93571 0.94471 0.93661 0.78319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.19 37.16 0.30 -2.48 16 2 C -0.16 -3.38 4.10 -26.73 -0.11 -3.49 16 3 C 0.18 4.17 0.94 -68.87 -0.06 4.10 16 4 H 0.04 1.00 3.82 -51.93 -0.20 0.81 16 5 C -0.50 -13.56 8.59 -34.44 -0.30 -13.86 16 6 H 0.08 2.38 7.92 -52.49 -0.42 1.97 16 7 C 0.07 2.09 5.36 -17.82 -0.10 1.99 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 9 Si 0.86 21.28 25.74 -169.99 -4.38 16.90 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.25 -5.90 5.39 56.52 0.30 -5.59 16 13 N -0.51 -9.88 3.59 -220.14 -0.79 -10.67 16 14 C 0.06 1.11 4.17 -3.83 -0.02 1.10 16 15 C -0.12 -1.75 6.09 -26.65 -0.16 -1.92 16 16 C -0.12 -1.54 6.00 -26.61 -0.16 -1.70 16 17 C -0.12 -1.61 4.66 -26.65 -0.12 -1.73 16 18 C 0.07 1.21 1.03 -67.72 -0.07 1.14 16 19 H 0.05 0.82 4.19 -51.93 -0.22 0.60 16 20 C -0.09 -1.47 1.70 -90.62 -0.15 -1.62 16 21 H 0.08 1.58 5.29 -51.93 -0.27 1.30 16 22 C -0.13 -2.35 8.66 37.16 0.32 -2.02 16 23 C 0.08 1.09 5.85 37.16 0.22 1.31 16 24 O -0.57 -7.83 13.14 -35.23 -0.46 -8.29 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.82 5.30 -51.93 -0.28 0.55 16 27 H 0.05 0.89 6.42 -51.93 -0.33 0.55 16 28 H 0.06 1.34 4.84 -51.93 -0.25 1.09 16 29 H 0.06 1.27 6.06 -51.93 -0.31 0.96 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.03 0.45 5.53 -51.93 -0.29 0.17 16 32 H 0.08 1.71 7.45 -51.93 -0.39 1.32 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.08 6.39 -51.93 -0.33 0.75 16 38 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16 39 H 0.08 1.66 7.36 -51.93 -0.38 1.27 16 40 H 0.04 0.78 7.74 -51.93 -0.40 0.38 16 41 H 0.05 0.73 6.32 -51.93 -0.33 0.40 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.54 6.69 -51.93 -0.35 0.20 16 44 H 0.37 3.12 9.12 45.56 0.42 3.53 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -30.13 305.51 -7.10 -37.23 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.44 Total: 5.86 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -0.41 Total: -19.18 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.02 Total: -37.13 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.46 Total: -8.29 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.38 Total: 16.90 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.13 -7.10 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829247477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.224 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds