Wall clock time and date at job start Mon Mar 30 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 H 1.08993 * 109.47342 * 306.28598 * 3 2 1 5 5 C 1.50700 * 109.47195 * 186.28070 * 3 2 1 6 6 H 1.08000 * 120.00525 * 244.85917 * 5 3 2 7 7 C 1.37885 * 119.99536 * 65.13024 * 5 3 2 8 8 N 1.31507 * 119.99570 * 193.01582 * 7 5 3 9 9 Si 1.86801 * 119.99887 * 13.01846 * 7 5 3 10 10 H 1.48503 * 109.46692 * 93.46823 * 9 7 5 11 11 H 1.48496 * 109.47050 * 213.46675 * 9 7 5 12 12 H 1.48498 * 109.46939 * 333.46923 * 9 7 5 13 13 N 1.46900 * 109.47278 * 66.28689 * 3 2 1 14 14 C 1.46851 * 111.00162 * 43.27800 * 13 3 2 15 15 C 1.53037 * 109.52503 * 174.16420 * 14 13 3 16 16 C 1.53118 * 109.27826 * 59.17854 * 15 14 13 17 17 C 1.53123 * 109.16174 * 302.34424 * 16 15 14 18 18 C 1.46845 * 110.99904 * 279.07073 * 13 3 2 19 19 H 1.09000 * 109.46390 * 65.82323 * 18 13 3 20 20 C 1.53004 * 109.46145 * 305.85121 * 18 13 3 21 21 H 1.09007 * 109.46762 * 62.34442 * 20 18 13 22 22 C 1.52997 * 109.47414 * 302.34166 * 20 18 13 23 23 C 1.52999 * 109.47118 * 182.33854 * 20 18 13 24 24 O 1.42898 * 109.47112 * 185.00471 * 23 20 18 25 25 H 1.09000 * 109.46973 * 158.74576 * 1 2 3 26 26 H 1.09000 * 109.47618 * 278.74869 * 1 2 3 27 27 H 1.09003 * 109.46742 * 38.74604 * 1 2 3 28 28 H 1.08994 * 109.46982 * 239.99873 * 2 1 3 29 29 H 1.08998 * 109.46678 * 119.99710 * 2 1 3 30 30 H 0.97005 * 119.99668 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46238 * 294.17687 * 14 13 3 32 32 H 1.08993 * 109.46288 * 54.14580 * 14 13 3 33 33 H 1.09001 * 109.50153 * 299.23711 * 15 14 13 34 34 H 1.08999 * 109.53701 * 179.14180 * 15 14 13 35 35 H 1.09001 * 109.52468 * 182.44106 * 16 15 14 36 36 H 1.09004 * 109.57772 * 62.28506 * 16 15 14 37 37 H 1.08997 * 109.50474 * 297.71477 * 17 16 15 38 38 H 1.09000 * 109.53504 * 177.61384 * 17 16 15 39 39 H 1.08999 * 109.47056 * 63.07282 * 22 20 18 40 40 H 1.08996 * 109.46952 * 183.07512 * 22 20 18 41 41 H 1.09006 * 109.46582 * 303.07353 * 22 20 18 42 42 H 1.09003 * 109.47382 * 305.00467 * 23 20 18 43 43 H 1.09000 * 109.47136 * 65.00632 * 23 20 18 44 44 H 0.96701 * 114.00011 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9878 -0.8283 5 6 3.5389 1.4454 -0.1554 6 1 4.1642 1.8126 0.6449 7 6 4.1119 0.9843 -1.3218 8 7 5.4041 0.7446 -1.3695 9 14 3.0527 0.7003 -2.8340 10 1 3.0697 1.9167 -3.6857 11 1 3.5881 -0.4509 -3.6042 12 1 1.6583 0.4095 -2.4141 13 7 1.6781 2.0898 1.2680 14 6 1.9199 1.1923 2.4049 15 6 1.6712 1.9460 3.7134 16 6 0.2268 2.4534 3.7379 17 6 -0.0129 3.3468 2.5176 18 6 0.2846 2.5524 1.2438 19 1 -0.3827 1.6923 1.1880 20 6 0.0657 3.4474 0.0223 21 1 0.2363 2.8699 -0.8864 22 6 1.0430 4.6236 0.0701 23 6 -1.3699 3.9764 0.0283 24 8 -1.6099 4.7163 -1.1704 25 1 -0.3633 -0.9578 -0.3725 26 1 -0.3634 0.1563 1.0157 27 1 -0.3633 0.8015 -0.6432 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8073 0.4206 -2.1901 31 1 1.2449 0.3387 2.3437 32 1 2.9516 0.8420 2.3780 33 1 2.3553 2.7919 3.7818 34 1 1.8359 1.2758 4.5571 35 1 0.0579 3.0279 4.6487 36 1 -0.4585 1.6062 3.7094 37 1 0.6446 4.2146 2.5672 38 1 -1.0515 3.6772 2.5062 39 1 2.0650 4.2494 0.0107 40 1 0.8506 5.2901 -0.7706 41 1 0.9094 5.1691 1.0043 42 1 -2.0655 3.1391 0.0839 43 1 -1.5139 4.6264 0.8914 44 1 -2.5026 5.0826 -1.2345 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829247477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:49 Heat of formation + Delta-G solvation = -68.883060 kcal Electronic energy + Delta-G solvation = -21524.887173 eV Core-core repulsion = 18669.255735 eV Total energy + Delta-G solvation = -2855.631438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15743 -37.99263 -36.36661 -34.83853 -34.14495 -31.94887 -29.98872 -29.42584 -27.23967 -25.11912 -24.85300 -23.67210 -21.41020 -21.27294 -19.52588 -18.75972 -18.27737 -17.18231 -16.42027 -16.21363 -15.92509 -15.41460 -15.09060 -14.91706 -14.65966 -14.58254 -14.01125 -13.80655 -13.42517 -13.31039 -13.23467 -13.06546 -12.74637 -12.66392 -12.55992 -12.31972 -12.13197 -11.95313 -11.72405 -11.55800 -11.32734 -11.20371 -11.08977 -10.98149 -10.77923 -10.59558 -10.44200 -8.63558 -8.25864 -6.20953 1.29861 1.35659 1.42804 2.35423 3.08418 3.15892 3.59371 3.91386 4.05024 4.09939 4.19840 4.24959 4.34852 4.40721 4.42500 4.49159 4.50963 4.56729 4.68185 4.74842 4.84527 4.88877 4.93631 5.01174 5.05835 5.08257 5.14475 5.18745 5.22472 5.26909 5.30719 5.34420 5.42434 5.49990 5.60088 5.62691 5.70732 5.74878 6.18085 6.64608 6.84187 6.87490 7.02729 7.41780 8.91579 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.009828 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.829750 B = 2848.364009 C = 3615.746331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.158 4.158 3 C 0.192 3.808 4 H 0.037 0.963 5 C -0.492 4.492 6 H 0.032 0.968 7 C 0.016 3.984 8 N -0.948 5.948 9 Si 0.917 3.083 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.226 1.226 13 N -0.523 5.523 14 C 0.063 3.937 15 C -0.113 4.113 16 C -0.111 4.111 17 C -0.112 4.112 18 C 0.075 3.925 19 H 0.060 0.940 20 C -0.090 4.090 21 H 0.048 0.952 22 C -0.125 4.125 23 C 0.088 3.912 24 O -0.594 6.594 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.262 0.738 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.037 0.963 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.329 4.101 7.521 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.198 4.198 3 C 0.084 3.916 4 H 0.054 0.946 5 C -0.530 4.530 6 H 0.050 0.950 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.742 3.258 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.149 1.149 13 N -0.247 5.247 14 C -0.065 4.065 15 C -0.151 4.151 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.033 4.033 19 H 0.077 0.923 20 C -0.109 4.109 21 H 0.067 0.933 22 C -0.183 4.183 23 C 0.010 3.990 24 O -0.402 6.402 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -17.283 4.290 7.374 19.274 hybrid contribution -0.209 -0.888 -1.166 1.481 sum -17.492 3.402 6.207 18.870 Atomic orbital electron populations 1.22073 0.95295 1.01375 1.01646 1.22555 0.95823 1.00623 1.00785 1.19576 0.93411 0.89264 0.89330 0.94584 1.21183 0.91686 1.39427 1.00723 0.95007 1.25637 0.95714 0.95139 1.01572 1.70094 1.13001 1.47637 1.28163 0.86346 0.81994 0.77457 0.80027 1.21016 1.21490 1.14915 1.61933 1.20625 1.39591 1.02515 1.21962 0.99467 0.93983 0.91068 1.21587 0.97857 0.99883 0.95758 1.21536 0.95517 0.99526 0.98306 1.21771 1.01785 0.98441 0.92975 1.21957 0.89738 0.96878 0.94717 0.92285 1.21204 0.95006 0.96896 0.97787 0.93334 1.21559 0.98879 0.96999 1.00836 1.22221 0.94826 0.94982 0.86969 1.86478 1.38239 1.73279 1.42190 0.92492 0.91213 0.93191 0.94239 0.92646 0.92939 0.94776 0.94042 0.92865 0.90797 0.90226 0.91652 0.91940 0.89493 0.94344 0.93974 0.91707 0.92628 0.91380 0.75547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 8.19 71.98 0.59 -4.17 16 2 C -0.16 -6.62 4.10 30.59 0.13 -6.49 16 3 C 0.19 8.85 0.94 44.17 0.04 8.89 16 4 H 0.04 1.74 3.82 -2.39 -0.01 1.73 16 5 C -0.49 -28.38 8.59 25.60 0.22 -28.16 16 6 H 0.03 2.08 7.92 -2.91 -0.02 2.06 16 7 C 0.02 0.95 5.36 84.66 0.45 1.41 16 8 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 9 Si 0.92 45.23 25.74 68.60 1.77 46.99 16 10 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.23 -10.11 5.39 99.48 0.54 -9.57 16 13 N -0.52 -20.43 3.59 -850.40 -3.05 -23.48 16 14 C 0.06 2.29 4.17 86.32 0.36 2.65 16 15 C -0.11 -3.18 6.09 30.65 0.19 -2.99 16 16 C -0.11 -2.45 6.00 30.67 0.18 -2.27 16 17 C -0.11 -2.68 4.66 30.65 0.14 -2.54 16 18 C 0.08 2.28 1.03 44.94 0.05 2.33 16 19 H 0.06 1.71 4.19 -2.39 -0.01 1.70 16 20 C -0.09 -2.86 1.70 -10.79 -0.02 -2.88 16 21 H 0.05 1.85 5.29 -2.38 -0.01 1.84 16 22 C -0.13 -4.34 8.66 71.98 0.62 -3.72 16 23 C 0.09 2.02 5.85 71.98 0.42 2.44 16 24 O -0.59 -14.34 13.14 -148.98 -1.96 -16.30 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.99 5.30 -2.39 -0.01 1.97 16 27 H 0.05 1.62 6.42 -2.39 -0.02 1.61 16 28 H 0.04 1.77 4.84 -2.39 -0.01 1.76 16 29 H 0.05 2.33 6.06 -2.39 -0.01 2.32 16 30 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 31 H 0.03 1.16 5.53 -2.39 -0.01 1.15 16 32 H 0.04 1.81 7.45 -2.39 -0.02 1.79 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.06 1.65 6.39 -2.39 -0.02 1.64 16 38 H 0.09 1.57 6.55 -2.39 -0.02 1.56 16 39 H 0.04 1.62 7.36 -2.39 -0.02 1.61 16 40 H 0.04 1.44 7.74 -2.39 -0.02 1.42 16 41 H 0.06 1.95 6.32 -2.38 -0.02 1.93 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.27 6.69 -2.39 -0.02 1.25 16 44 H 0.40 5.12 9.12 -74.06 -0.68 4.44 16 Total: -1.00 -69.94 305.51 0.58 -69.35 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.15 Total: 19.27 kcal Atomic # 6 Polarization: -38.88 SS G_CDS: 3.38 Total: -35.50 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -2.75 Total: -83.82 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -1.96 Total: -16.30 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.77 Total: 46.99 kcal Total: -69.94 0.58 -69.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829247477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.470 kcal (2) G-P(sol) polarization free energy of solvation -69.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds