Wall clock time and date at job start Mon Mar 30 2020 07:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47665 * 2 1 4 4 C 1.52996 * 109.47103 * 120.00318 * 2 1 3 5 5 C 1.50699 * 109.47253 * 184.99669 * 4 2 1 6 6 H 1.08002 * 119.99876 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00309 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00388 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00017 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47467 * 89.99637 * 9 7 5 11 11 H 1.48501 * 109.47105 * 209.99849 * 9 7 5 12 12 H 1.48506 * 109.47069 * 329.99419 * 9 7 5 13 13 N 1.46899 * 109.46827 * 239.99904 * 2 1 3 14 14 C 1.46909 * 110.99996 * 85.00217 * 13 2 1 15 15 C 1.53000 * 109.47079 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.49255 * 59.97009 * 15 14 13 17 17 C 1.53091 * 109.47862 * 180.02562 * 15 14 13 18 18 C 1.53176 * 109.21206 * 177.62293 * 17 15 14 19 19 C 1.53174 * 109.04061 * 302.98570 * 18 17 15 20 20 C 1.52994 * 109.52585 * 176.88776 * 19 18 17 21 21 C 1.53004 * 109.52185 * 297.07937 * 19 18 17 22 22 C 1.53097 * 109.16185 * 56.97999 * 19 18 17 23 23 O 1.42902 * 109.41493 * 302.39739 * 22 19 18 24 24 H 1.09001 * 109.47432 * 60.00241 * 1 2 3 25 25 H 1.09009 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47167 * 299.99894 * 1 2 3 27 27 H 1.09001 * 109.47340 * 304.99905 * 4 2 1 28 28 H 1.09002 * 109.47621 * 64.99616 * 4 2 1 29 29 H 0.96998 * 120.00512 * 180.02562 * 8 7 5 30 30 H 1.00905 * 111.00774 * 321.04507 * 13 2 1 31 31 H 1.09002 * 109.46660 * 59.99790 * 14 13 2 32 32 H 1.08995 * 109.46935 * 299.99764 * 14 13 2 33 33 H 1.09002 * 109.52401 * 57.68445 * 17 15 14 34 34 H 1.09004 * 109.52068 * 297.56090 * 17 15 14 35 35 H 1.08995 * 109.54674 * 62.85906 * 18 17 15 36 36 H 1.08999 * 109.54128 * 183.11874 * 18 17 15 37 37 H 1.09004 * 109.46842 * 60.00247 * 20 19 18 38 38 H 1.09000 * 109.46922 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47545 * 300.00187 * 20 19 18 40 40 H 1.09005 * 109.46918 * 59.99630 * 21 19 18 41 41 H 1.08998 * 109.47159 * 179.97438 * 21 19 18 42 42 H 1.09003 * 109.47238 * 299.99447 * 21 19 18 43 43 H 1.08997 * 109.47580 * 62.37620 * 22 19 18 44 44 H 1.08994 * 109.47934 * 182.41016 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6151 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1928 2.3582 8 7 5.5409 -1.0997 2.4138 9 14 3.3014 -2.1080 3.6958 10 1 3.1707 -3.5381 3.3179 11 1 4.0448 -2.0004 4.9768 12 1 1.9503 -1.5128 3.8560 13 7 2.0195 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3470 15 6 2.5961 -0.5329 -3.5742 16 1 1.9205 -1.3571 -3.8031 17 6 2.6622 0.4208 -4.7700 18 6 3.2329 -0.3262 -5.9794 19 6 4.6078 -0.8933 -5.6132 20 6 5.1545 -1.7075 -6.7876 21 6 5.5669 0.2557 -5.2956 22 6 4.4679 -1.7970 -4.3854 23 8 3.9030 -1.0488 -3.3068 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6053 -0.2618 2.1369 28 1 1.7515 -1.7716 1.2056 29 1 6.0253 -1.5065 3.1492 30 1 1.4495 -1.4980 -1.4101 31 1 2.7588 1.0462 -2.1182 32 1 1.0870 0.6163 -2.5526 33 1 3.3061 1.2659 -4.5267 34 1 1.6605 0.7815 -5.0041 35 1 2.5635 -1.1414 -6.2538 36 1 3.3342 0.3622 -6.8185 37 1 5.2486 -1.0646 -7.6628 38 1 6.1330 -2.1102 -6.5262 39 1 4.4715 -2.5272 -7.0106 40 1 5.1772 0.8329 -4.4570 41 1 6.5448 -0.1488 -5.0347 42 1 5.6617 0.9017 -6.1685 43 1 3.8165 -2.6374 -4.6250 44 1 5.4500 -2.1695 -4.0943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711386214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:44 Heat of formation + Delta-G solvation = -68.796171 kcal Electronic energy + Delta-G solvation = -20050.377869 eV Core-core repulsion = 17194.750199 eV Total energy + Delta-G solvation = -2855.627671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82715 -36.84285 -35.05313 -33.07831 -32.14869 -30.37270 -27.75980 -27.30705 -26.90089 -25.41784 -23.16831 -22.25074 -21.23875 -19.63865 -18.71738 -16.47455 -16.20554 -15.65255 -15.03628 -14.96384 -14.49488 -14.15719 -13.95483 -13.76213 -13.12144 -13.04827 -12.54152 -12.34465 -12.26044 -12.12721 -11.92213 -11.85796 -11.66631 -11.62954 -11.55803 -11.13432 -10.89972 -10.76268 -10.66260 -10.37222 -10.07058 -9.97672 -9.64979 -9.47560 -9.05605 -8.89966 -8.30389 -7.46275 -5.78211 -3.70990 3.44269 3.50768 3.53448 4.06475 4.54624 4.64644 4.65681 4.72889 4.84409 5.13130 5.19325 5.30437 5.41590 5.53066 5.55955 5.57940 5.62092 5.66184 5.67841 5.77162 5.82176 5.84314 5.85085 5.89257 5.93118 5.96424 5.98381 6.10433 6.14826 6.30304 6.34535 6.41093 6.48861 6.55950 6.89664 7.26553 7.40462 7.63243 7.92580 8.03711 8.21298 8.86130 9.36058 9.84911 11.36214 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.005200 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.187247 B = 5383.501715 C = 6167.320975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.098 3.902 3 H 0.069 0.931 4 C -0.003 4.003 5 C -0.482 4.482 6 H 0.078 0.922 7 C 0.059 3.941 8 N -0.910 5.910 9 Si 0.873 3.127 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.269 1.269 13 N -0.652 5.652 14 C 0.069 3.931 15 C 0.096 3.904 16 H 0.048 0.952 17 C -0.152 4.152 18 C -0.108 4.108 19 C -0.103 4.103 20 C -0.139 4.139 21 C -0.137 4.137 22 C 0.069 3.931 23 O -0.342 6.342 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.015 0.985 28 H 0.010 0.990 29 H 0.258 0.742 30 H 0.327 0.673 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.043 0.957 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 1.255 -18.131 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.012 4.012 3 H 0.088 0.912 4 C -0.041 4.041 5 C -0.521 4.521 6 H 0.096 0.904 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.218 1.218 12 H -0.194 1.194 13 N -0.282 5.282 14 C -0.061 4.061 15 C 0.037 3.963 16 H 0.066 0.934 17 C -0.190 4.190 18 C -0.145 4.145 19 C -0.103 4.103 20 C -0.196 4.196 21 C -0.194 4.194 22 C -0.008 4.008 23 O -0.260 6.260 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.722 1.324 -17.668 18.618 hybrid contribution -1.490 -0.564 0.211 1.607 sum -7.212 0.761 -17.457 18.903 Atomic orbital electron populations 1.22612 0.99684 1.01130 1.00795 1.21568 0.89453 0.98339 0.91803 0.91242 1.19601 0.97960 0.95018 0.91521 1.21059 0.89461 1.33397 1.08170 0.90368 1.25008 0.94649 0.96448 0.97859 1.69922 1.06389 1.46528 1.32277 0.86893 0.80314 0.80674 0.81942 1.20675 1.21813 1.19438 1.60358 1.57461 1.08141 1.02203 1.21956 0.97931 0.96103 0.90067 1.22092 0.85658 0.94743 0.93810 0.93385 1.22245 1.01478 0.99697 0.95585 1.21625 0.95677 0.99633 0.97605 1.21229 0.95768 0.97009 0.96281 1.21789 1.00958 0.99554 0.97340 1.21813 0.98704 0.97486 1.01441 1.22598 0.99009 0.92473 0.86729 1.88267 1.30315 1.70443 1.36929 0.94142 0.93113 0.92509 0.96728 0.97159 0.93262 0.85521 0.90494 0.95251 0.90598 0.91441 0.92173 0.91835 0.92660 0.92393 0.92801 0.91419 0.92634 0.93318 0.93894 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 9.16 37.15 0.34 -2.59 16 2 C 0.10 1.96 2.53 -67.72 -0.17 1.79 16 3 H 0.07 1.45 7.80 -51.93 -0.40 1.04 16 4 C 0.00 -0.08 3.72 -27.89 -0.10 -0.19 16 5 C -0.48 -14.26 9.39 -34.44 -0.32 -14.59 16 6 H 0.08 2.55 7.99 -52.49 -0.42 2.13 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -29.38 13.96 55.43 0.77 -28.61 16 9 Si 0.87 22.64 27.47 -169.99 -4.67 17.97 16 10 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 13 N -0.65 -12.52 5.83 -106.73 -0.62 -13.15 16 14 C 0.07 1.10 5.18 -3.82 -0.02 1.08 16 15 C 0.10 1.37 2.86 -26.68 -0.08 1.29 16 16 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 17 C -0.15 -1.75 5.05 -26.59 -0.13 -1.88 16 18 C -0.11 -1.11 4.81 -26.55 -0.13 -1.24 16 19 C -0.10 -1.14 0.78 -154.37 -0.12 -1.26 16 20 C -0.14 -1.27 8.49 37.15 0.32 -0.95 16 21 C -0.14 -1.61 8.08 37.16 0.30 -1.31 16 22 C 0.07 0.95 5.54 37.21 0.21 1.15 16 23 O -0.34 -5.93 9.70 -35.23 -0.34 -6.27 16 24 H 0.04 0.56 7.45 -51.93 -0.39 0.18 16 25 H 0.05 0.78 8.13 -51.92 -0.42 0.36 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 28 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 29 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 30 H 0.33 5.78 8.47 -39.29 -0.33 5.45 16 31 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 32 H 0.03 0.41 7.44 -51.93 -0.39 0.02 16 33 H 0.08 0.92 6.63 -51.93 -0.34 0.58 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.92 6.14 -51.93 -0.32 0.60 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -32.64 337.65 -8.22 -40.87 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.44 Total: 1.06 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -0.01 Total: -16.96 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.15 Total: -41.75 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.34 Total: -6.27 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.64 -8.22 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711386214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.928 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds