Wall clock time and date at job start Mon Mar 30 2020 07:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47665 * 2 1 4 4 C 1.52996 * 109.47103 * 120.00318 * 2 1 3 5 5 C 1.50699 * 109.47253 * 184.99669 * 4 2 1 6 6 H 1.08002 * 119.99876 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00309 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00388 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00017 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47467 * 89.99637 * 9 7 5 11 11 H 1.48501 * 109.47105 * 209.99849 * 9 7 5 12 12 H 1.48506 * 109.47069 * 329.99419 * 9 7 5 13 13 N 1.46899 * 109.46827 * 239.99904 * 2 1 3 14 14 C 1.46909 * 110.99996 * 85.00217 * 13 2 1 15 15 C 1.53000 * 109.47079 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.49255 * 59.97009 * 15 14 13 17 17 C 1.53091 * 109.47862 * 180.02562 * 15 14 13 18 18 C 1.53176 * 109.21206 * 177.62293 * 17 15 14 19 19 C 1.53174 * 109.04061 * 302.98570 * 18 17 15 20 20 C 1.52994 * 109.52585 * 176.88776 * 19 18 17 21 21 C 1.53004 * 109.52185 * 297.07937 * 19 18 17 22 22 C 1.53097 * 109.16185 * 56.97999 * 19 18 17 23 23 O 1.42902 * 109.41493 * 302.39739 * 22 19 18 24 24 H 1.09001 * 109.47432 * 60.00241 * 1 2 3 25 25 H 1.09009 * 109.47340 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47167 * 299.99894 * 1 2 3 27 27 H 1.09001 * 109.47340 * 304.99905 * 4 2 1 28 28 H 1.09002 * 109.47621 * 64.99616 * 4 2 1 29 29 H 0.96998 * 120.00512 * 180.02562 * 8 7 5 30 30 H 1.00905 * 111.00774 * 321.04507 * 13 2 1 31 31 H 1.09002 * 109.46660 * 59.99790 * 14 13 2 32 32 H 1.08995 * 109.46935 * 299.99764 * 14 13 2 33 33 H 1.09002 * 109.52401 * 57.68445 * 17 15 14 34 34 H 1.09004 * 109.52068 * 297.56090 * 17 15 14 35 35 H 1.08995 * 109.54674 * 62.85906 * 18 17 15 36 36 H 1.08999 * 109.54128 * 183.11874 * 18 17 15 37 37 H 1.09004 * 109.46842 * 60.00247 * 20 19 18 38 38 H 1.09000 * 109.46922 * 179.97438 * 20 19 18 39 39 H 1.08996 * 109.47545 * 300.00187 * 20 19 18 40 40 H 1.09005 * 109.46918 * 59.99630 * 21 19 18 41 41 H 1.08998 * 109.47159 * 179.97438 * 21 19 18 42 42 H 1.09003 * 109.47238 * 299.99447 * 21 19 18 43 43 H 1.08997 * 109.47580 * 62.37620 * 22 19 18 44 44 H 1.08994 * 109.47934 * 182.41016 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6151 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1928 2.3582 8 7 5.5409 -1.0997 2.4138 9 14 3.3014 -2.1080 3.6958 10 1 3.1707 -3.5381 3.3179 11 1 4.0448 -2.0004 4.9768 12 1 1.9503 -1.5128 3.8560 13 7 2.0195 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3470 15 6 2.5961 -0.5329 -3.5742 16 1 1.9205 -1.3571 -3.8031 17 6 2.6622 0.4208 -4.7700 18 6 3.2329 -0.3262 -5.9794 19 6 4.6078 -0.8933 -5.6132 20 6 5.1545 -1.7075 -6.7876 21 6 5.5669 0.2557 -5.2956 22 6 4.4679 -1.7970 -4.3854 23 8 3.9030 -1.0488 -3.3068 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6053 -0.2618 2.1369 28 1 1.7515 -1.7716 1.2056 29 1 6.0253 -1.5065 3.1492 30 1 1.4495 -1.4980 -1.4101 31 1 2.7588 1.0462 -2.1182 32 1 1.0870 0.6163 -2.5526 33 1 3.3061 1.2659 -4.5267 34 1 1.6605 0.7815 -5.0041 35 1 2.5635 -1.1414 -6.2538 36 1 3.3342 0.3622 -6.8185 37 1 5.2486 -1.0646 -7.6628 38 1 6.1330 -2.1102 -6.5262 39 1 4.4715 -2.5272 -7.0106 40 1 5.1772 0.8329 -4.4570 41 1 6.5448 -0.1488 -5.0347 42 1 5.6617 0.9017 -6.1685 43 1 3.8165 -2.6374 -4.6250 44 1 5.4500 -2.1695 -4.0943 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711386214.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:41 Heat of formation + Delta-G solvation = -90.913231 kcal Electronic energy + Delta-G solvation = -20051.336937 eV Core-core repulsion = 17194.750199 eV Total energy + Delta-G solvation = -2856.586738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.87158 -38.31598 -36.17668 -34.81559 -33.80793 -31.80940 -29.56688 -28.18916 -28.00484 -26.51372 -24.75375 -23.69852 -22.41854 -21.29589 -19.70300 -18.74009 -17.39746 -16.82741 -16.42620 -16.16020 -15.89451 -15.60579 -15.21968 -14.92694 -14.71846 -14.24893 -14.08685 -13.82388 -13.47004 -13.37196 -13.16539 -13.01091 -12.93464 -12.85264 -12.61832 -12.53247 -12.34674 -11.98157 -11.80698 -11.70598 -11.65726 -11.45183 -11.27422 -11.14416 -10.92381 -10.64615 -10.13566 -8.89738 -8.13579 -6.12242 1.38222 1.40603 1.51638 2.45024 2.96845 3.18267 3.37690 3.73695 3.84152 3.90117 4.07944 4.14842 4.23098 4.27331 4.40914 4.46088 4.58015 4.60042 4.65359 4.69980 4.73815 4.80039 4.81545 4.92009 4.97735 4.98187 5.04018 5.06226 5.14462 5.17303 5.22345 5.24865 5.30929 5.33299 5.42892 5.54933 5.55826 5.79796 6.36391 6.50982 6.60771 6.81991 6.96472 7.47574 9.04687 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023943 B = 0.005200 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.187247 B = 5383.501715 C = 6167.320975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 H 0.050 0.950 4 C -0.002 4.002 5 C -0.486 4.486 6 H 0.027 0.973 7 C -0.009 4.009 8 N -0.963 5.963 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.245 1.245 13 N -0.681 5.681 14 C 0.074 3.926 15 C 0.094 3.906 16 H 0.060 0.940 17 C -0.146 4.146 18 C -0.104 4.104 19 C -0.098 4.098 20 C -0.134 4.134 21 C -0.136 4.136 22 C 0.063 3.937 23 O -0.388 6.388 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.020 0.980 28 H 0.014 0.986 29 H 0.259 0.741 30 H 0.336 0.664 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 0.671 -19.360 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 H 0.069 0.931 4 C -0.039 4.039 5 C -0.524 4.524 6 H 0.045 0.955 7 C -0.203 4.203 8 N -0.606 5.606 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.169 1.169 13 N -0.312 5.312 14 C -0.056 4.056 15 C 0.037 3.963 16 H 0.078 0.922 17 C -0.184 4.184 18 C -0.141 4.141 19 C -0.099 4.099 20 C -0.192 4.192 21 C -0.193 4.193 22 C -0.014 4.014 23 O -0.307 6.307 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.586 0.749 -18.921 20.791 hybrid contribution -0.508 -0.336 0.550 0.821 sum -9.094 0.413 -18.371 20.503 Atomic orbital electron populations 1.22428 0.95678 1.02329 1.02382 1.21347 0.92518 0.96528 0.90475 0.93135 1.19571 0.94302 0.95830 0.94240 1.21305 0.92300 1.32220 1.06597 0.95511 1.26024 0.95564 0.97751 1.00984 1.70113 1.08612 1.48266 1.33588 0.85658 0.79660 0.79196 0.77976 1.19832 1.21501 1.16860 1.60187 1.58457 1.09390 1.03160 1.21953 0.98901 0.95011 0.89694 1.22197 0.84611 0.95498 0.94039 0.92241 1.22192 1.02677 0.98672 0.94862 1.21630 0.94883 1.00215 0.97377 1.21190 0.96537 0.96386 0.95765 1.21754 1.00922 0.99768 0.96729 1.21792 0.98363 0.97898 1.01248 1.22730 0.98342 0.93160 0.87122 1.88200 1.31961 1.71275 1.39239 0.91648 0.92055 0.91867 0.96139 0.96773 0.93191 0.84513 0.93367 0.92142 0.91897 0.89122 0.90931 0.89943 0.91167 0.92669 0.91834 0.94001 0.93513 0.91334 0.92910 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.90 9.16 71.98 0.66 -4.24 16 2 C 0.10 4.01 2.53 44.91 0.11 4.12 16 3 H 0.05 2.15 7.80 -2.39 -0.02 2.13 16 4 C 0.00 -0.08 3.72 29.85 0.11 0.03 16 5 C -0.49 -29.73 9.39 25.60 0.24 -29.49 16 6 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 7 C -0.01 -0.58 5.47 84.65 0.46 -0.11 16 8 N -0.96 -64.52 13.96 21.45 0.30 -64.23 16 9 Si 0.95 46.93 27.47 68.60 1.88 48.82 16 10 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 12 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 13 N -0.68 -26.23 5.83 -491.58 -2.87 -29.10 16 14 C 0.07 2.34 5.18 86.30 0.45 2.79 16 15 C 0.09 2.67 2.86 30.62 0.09 2.75 16 16 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 17 C -0.15 -3.13 5.05 30.68 0.15 -2.97 16 18 C -0.10 -1.87 4.81 30.71 0.15 -1.72 16 19 C -0.10 -2.08 0.78 -52.09 -0.04 -2.12 16 20 C -0.13 -2.18 8.49 71.98 0.61 -1.57 16 21 C -0.14 -3.20 8.08 71.98 0.58 -2.61 16 22 C 0.06 1.76 5.54 72.01 0.40 2.16 16 23 O -0.39 -13.99 9.70 -148.98 -1.45 -15.43 16 24 H 0.06 1.58 7.45 -2.39 -0.02 1.56 16 25 H 0.06 1.66 8.13 -2.38 -0.02 1.64 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 28 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 29 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 30 H 0.34 11.56 8.47 -89.69 -0.76 10.80 16 31 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 32 H 0.06 1.54 7.44 -2.39 -0.02 1.52 16 33 H 0.06 1.52 6.63 -2.39 -0.02 1.50 16 34 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.04 1.19 6.14 -2.38 -0.01 1.17 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -74.18 337.65 1.97 -72.21 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.12 Total: 20.71 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 3.98 Total: -32.99 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -2.57 Total: -93.32 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.45 Total: -15.43 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.88 Total: 48.82 kcal Total: -74.18 1.97 -72.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711386214.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.700 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds