Wall clock time and date at job start Mon Mar 30 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47254 * 2 1 4 4 C 1.50706 * 109.47453 * 119.99899 * 2 1 3 5 5 H 1.07993 * 119.99983 * 119.99873 * 4 2 1 6 6 C 1.37877 * 119.99617 * 299.72705 * 4 2 1 7 7 N 1.31516 * 119.99773 * 180.27278 * 6 4 2 8 8 Si 1.86796 * 120.00267 * 0.27302 * 6 4 2 9 9 H 1.48502 * 109.47378 * 90.00184 * 8 6 4 10 10 H 1.48504 * 109.47421 * 210.00065 * 8 6 4 11 11 H 1.48503 * 109.47339 * 330.00244 * 8 6 4 12 12 N 1.46900 * 109.47310 * 240.00049 * 2 1 3 13 13 C 1.46899 * 111.00076 * 84.99779 * 12 2 1 14 14 C 1.53000 * 109.47406 * 180.02562 * 13 12 2 15 15 O 1.42896 * 109.47071 * 64.99444 * 14 13 12 16 16 C 1.52998 * 109.47001 * 305.00174 * 14 13 12 17 17 C 1.53001 * 109.47466 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46963 * 59.99939 * 17 16 14 19 19 C 1.53003 * 109.46827 * 300.00064 * 18 17 16 20 20 C 1.52997 * 109.47538 * 299.99988 * 19 18 17 21 21 C 1.53006 * 109.47109 * 179.97438 * 19 18 17 22 22 C 1.52990 * 109.47329 * 184.99937 * 14 13 12 23 23 H 1.09003 * 109.46829 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47478 * 299.99726 * 1 2 3 25 25 H 1.09000 * 109.47211 * 60.00314 * 1 2 3 26 26 H 0.97003 * 120.00041 * 179.97438 * 7 6 4 27 27 H 1.00896 * 111.00117 * 321.04589 * 12 2 1 28 28 H 1.09005 * 109.47178 * 299.99960 * 13 12 2 29 29 H 1.09006 * 109.47089 * 60.00098 * 13 12 2 30 30 H 0.96700 * 114.00455 * 300.00696 * 15 14 13 31 31 H 1.09002 * 109.47058 * 300.00108 * 16 14 13 32 32 H 1.09005 * 109.47465 * 59.99349 * 16 14 13 33 33 H 1.09000 * 109.46962 * 299.99816 * 17 16 14 34 34 H 1.09002 * 109.47300 * 179.97438 * 17 16 14 35 35 H 1.08996 * 109.46965 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.47381 * 60.00134 * 18 17 16 37 37 H 1.08992 * 109.47322 * 168.82076 * 20 19 18 38 38 H 1.08998 * 109.47106 * 288.82403 * 20 19 18 39 39 H 1.09004 * 109.46511 * 48.81971 * 20 19 18 40 40 H 1.09000 * 109.47434 * 300.00275 * 21 19 18 41 41 H 1.09003 * 109.46336 * 59.99907 * 21 19 18 42 42 H 1.08994 * 109.47181 * 179.97438 * 21 19 18 43 43 H 1.08998 * 109.47453 * 300.00087 * 22 14 13 44 44 H 1.09000 * 109.47272 * 59.99959 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.7039 -0.2360 2.4827 7 7 2.1468 -0.8528 3.5565 8 14 0.6300 1.2827 2.6541 9 1 -0.7974 0.8764 2.7063 10 1 0.9858 2.0022 3.9036 11 1 0.8477 2.1771 1.4888 12 7 2.0197 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5950 -0.5331 -3.5745 15 8 1.6494 -1.5386 -3.9440 16 6 3.9364 -1.1912 -3.2449 17 6 4.4488 -1.9474 -4.4722 18 6 4.6326 -0.9690 -5.6341 19 6 3.2911 -0.3110 -5.9637 20 6 2.2784 -1.3876 -6.3589 21 6 3.4750 0.6679 -7.1252 22 6 2.7789 0.4456 -4.7359 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.9161 -0.5188 4.4376 27 1 1.4496 -1.4979 -1.4100 28 1 1.0870 0.6163 -2.5526 29 1 2.7588 1.0463 -2.1182 30 1 1.4831 -2.1951 -3.2537 31 1 4.6578 -0.4242 -2.9629 32 1 3.8054 -1.8885 -2.4173 33 1 3.7273 -2.7144 -4.7537 34 1 5.4046 -2.4159 -4.2375 35 1 4.9972 -1.5079 -6.5086 36 1 5.3541 -0.2020 -5.3526 37 1 1.2809 -0.9503 -6.4005 38 1 2.5396 -1.7905 -7.3374 39 1 2.2933 -2.1890 -5.6202 40 1 4.1964 1.4348 -6.8433 41 1 3.8402 0.1294 -7.9997 42 1 2.5193 1.1363 -7.3603 43 1 1.8233 0.9145 -4.9707 44 1 3.5003 1.2126 -4.4540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381199288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:08 Heat of formation + Delta-G solvation = -86.861059 kcal Electronic energy + Delta-G solvation = -20577.990645 eV Core-core repulsion = 17721.579622 eV Total energy + Delta-G solvation = -2856.411023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16100 -38.12424 -36.51862 -34.43256 -33.48815 -32.27239 -30.21467 -27.95909 -27.18218 -27.12032 -25.62407 -22.87999 -22.13569 -21.25572 -19.40868 -18.82021 -17.50205 -17.00119 -16.63615 -16.07907 -15.57619 -15.40834 -15.04995 -14.80541 -14.76115 -14.40132 -14.00203 -13.71206 -13.61344 -13.35615 -13.18710 -12.89035 -12.71960 -12.70226 -12.61448 -12.49837 -12.25564 -12.02211 -11.75275 -11.68478 -11.48251 -11.25816 -11.23049 -11.09377 -10.78589 -10.67298 -10.31074 -9.03508 -8.27125 -6.29078 1.28695 1.34273 1.43868 2.31460 3.07244 3.32739 3.40833 3.80053 3.89286 3.96659 4.13798 4.28456 4.39254 4.44628 4.51392 4.53950 4.57238 4.62311 4.71216 4.75267 4.82061 4.84458 4.91602 4.96892 5.01320 5.08514 5.14705 5.18825 5.18930 5.27360 5.35767 5.37433 5.52273 5.53696 5.56088 5.62052 5.67805 5.89445 5.99693 6.65125 6.70719 6.78681 6.88545 7.35956 8.90163 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.038824 B = 0.004937 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.034324 B = 5670.225589 C = 5898.948436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.188 3.812 3 H 0.024 0.976 4 C -0.500 4.500 5 H 0.039 0.961 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.299 1.299 11 H -0.253 1.253 12 N -0.672 5.672 13 C 0.034 3.966 14 C 0.150 3.850 15 O -0.552 6.552 16 C -0.129 4.129 17 C -0.115 4.115 18 C -0.105 4.105 19 C -0.057 4.057 20 C -0.136 4.136 21 C -0.140 4.140 22 C -0.093 4.093 23 H 0.057 0.943 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.265 0.735 27 H 0.334 0.666 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.373 0.627 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 2.090 -21.283 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.078 3.922 3 H 0.042 0.958 4 C -0.539 4.539 5 H 0.057 0.943 6 C -0.187 4.187 7 N -0.591 5.591 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.227 1.227 11 H -0.178 1.178 12 N -0.303 5.303 13 C -0.096 4.096 14 C 0.109 3.891 15 O -0.359 6.359 16 C -0.167 4.167 17 C -0.153 4.153 18 C -0.143 4.143 19 C -0.057 4.057 20 C -0.193 4.193 21 C -0.197 4.197 22 C -0.131 4.131 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.222 0.778 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.513 2.518 -21.506 21.706 hybrid contribution -1.328 0.375 1.323 1.911 sum 0.185 2.893 -20.184 20.391 Atomic orbital electron populations 1.22704 0.99579 1.01472 0.99689 1.19390 0.89875 0.93985 0.88933 0.95823 1.21253 1.30181 1.12435 0.90010 0.94317 1.25769 0.97546 0.99883 0.95489 1.70041 1.47976 1.42603 0.98518 0.85844 0.79117 0.80162 0.77090 1.19418 1.22725 1.17771 1.60487 1.57599 1.09379 1.02845 1.22689 0.99278 0.96214 0.91418 1.21068 0.88105 0.88027 0.91875 1.86658 1.63702 1.41581 1.43951 1.21963 0.96485 1.00172 0.98114 1.21535 1.00751 0.98379 0.94591 1.21588 0.96285 0.98367 0.98031 1.20446 0.95498 0.95621 0.94153 1.22029 0.97268 0.99435 1.00532 1.21866 1.01580 0.98770 0.97470 1.21618 1.01291 0.96481 0.93700 0.92379 0.94733 0.92617 0.92646 0.84733 0.95399 0.91775 0.77775 0.92501 0.91949 0.91216 0.92202 0.91318 0.92217 0.94262 0.93782 0.90037 0.92476 0.92023 0.92853 0.91978 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.08 8.64 71.98 0.62 -6.46 16 2 C 0.19 8.49 2.16 44.17 0.10 8.59 16 3 H 0.02 1.12 6.85 -2.39 -0.02 1.11 16 4 C -0.50 -28.25 9.42 25.60 0.24 -28.01 16 5 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 6 C 0.01 0.57 5.45 84.65 0.46 1.03 16 7 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 8 Si 0.95 44.91 24.37 68.60 1.67 46.58 16 9 H -0.27 -12.05 6.88 99.48 0.68 -11.36 16 10 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 11 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 12 N -0.67 -25.08 5.25 -495.44 -2.60 -27.69 16 13 C 0.03 1.05 4.69 86.30 0.40 1.46 16 14 C 0.15 3.80 0.79 -10.80 -0.01 3.79 16 15 O -0.55 -13.39 8.75 -148.98 -1.30 -14.69 16 16 C -0.13 -3.39 4.70 30.59 0.14 -3.25 16 17 C -0.12 -2.49 5.59 30.60 0.17 -2.32 16 18 C -0.11 -2.01 4.73 30.60 0.14 -1.86 16 19 C -0.06 -1.11 0.77 -52.16 -0.04 -1.15 16 20 C -0.14 -2.80 7.12 71.98 0.51 -2.29 16 21 C -0.14 -2.30 8.45 71.98 0.61 -1.69 16 22 C -0.09 -2.08 3.87 30.61 0.12 -1.96 16 23 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 24 H 0.03 1.46 3.29 -2.39 -0.01 1.45 16 25 H 0.05 1.92 7.45 -2.39 -0.02 1.90 16 26 H 0.26 15.55 8.31 -92.71 -0.77 14.77 16 27 H 0.33 11.42 7.05 -89.70 -0.63 10.79 16 28 H 0.03 0.86 7.44 -2.38 -0.02 0.85 16 29 H 0.06 2.09 8.06 -2.38 -0.02 2.07 16 30 H 0.37 8.22 7.62 -74.06 -0.56 7.65 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.89 7.47 -2.38 -0.02 1.87 16 33 H 0.07 1.51 5.95 -2.39 -0.01 1.50 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.04 0.87 8.09 -2.39 -0.02 0.85 16 38 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 39 H 0.08 1.82 3.79 -2.38 -0.01 1.81 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -62.96 318.15 1.24 -61.73 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.30 Total: 27.39 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.47 Total: -34.13 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -2.30 Total: -86.88 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.30 Total: -14.69 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.58 kcal Total: -62.96 1.24 -61.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381199288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.132 kcal (2) G-P(sol) polarization free energy of solvation -62.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds