Wall clock time and date at job start Mon Mar 30 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47458 * 2 1 4 4 C 1.42900 * 113.99871 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47544 * 59.99790 * 4 3 2 6 6 C 1.52996 * 109.47273 * 299.99490 * 4 3 2 7 7 C 1.52999 * 109.46891 * 179.97438 * 4 3 2 8 8 N 1.46501 * 109.47288 * 64.99408 * 7 4 3 9 9 C 1.36935 * 120.00378 * 276.24262 * 8 7 4 10 10 H 1.07997 * 120.00027 * 146.00235 * 9 8 7 11 11 C 1.38810 * 120.00161 * 326.01605 * 9 8 7 12 12 N 1.31628 * 119.99786 * 336.91564 * 11 9 8 13 13 Si 1.86792 * 120.00569 * 156.91971 * 11 9 8 14 14 H 1.48497 * 109.47108 * 59.99674 * 13 11 9 15 15 H 1.48504 * 109.47623 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.47048 * 299.99937 * 13 11 9 17 17 C 1.46501 * 119.99758 * 95.96731 * 8 7 4 18 18 C 1.54262 * 110.03212 * 237.90832 * 17 8 7 19 19 C 1.54966 * 104.15821 * 217.13723 * 18 17 8 20 20 C 1.54883 * 102.77849 * 37.88747 * 19 18 17 21 21 C 1.53876 * 110.03050 * 120.69166 * 17 8 7 22 22 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47219 * 300.00718 * 1 2 3 24 24 H 1.09004 * 109.46621 * 60.00029 * 1 2 3 25 25 H 1.09001 * 109.47219 * 239.99282 * 2 1 3 26 26 H 1.08999 * 109.47279 * 119.99794 * 2 1 3 27 27 H 1.08994 * 109.47138 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47109 * 299.99917 * 5 4 3 29 29 H 1.09001 * 109.47171 * 59.99513 * 5 4 3 30 30 H 1.09005 * 109.47411 * 300.00587 * 6 4 3 31 31 H 1.09001 * 109.46810 * 59.99839 * 6 4 3 32 32 H 1.08994 * 109.47412 * 180.02562 * 6 4 3 33 33 H 1.08999 * 109.46968 * 304.99735 * 7 4 3 34 34 H 1.09000 * 109.47504 * 184.99886 * 7 4 3 35 35 H 0.96996 * 120.00362 * 180.02562 * 12 11 9 36 36 H 1.09001 * 110.01724 * 359.30310 * 17 8 7 37 37 H 1.08992 * 110.48993 * 335.78303 * 18 17 8 38 38 H 1.08997 * 110.48482 * 98.43339 * 18 17 8 39 39 H 1.09005 * 110.71953 * 279.57314 * 19 18 17 40 40 H 1.09000 * 110.92442 * 156.29883 * 19 18 17 41 41 H 1.09000 * 110.49138 * 203.40440 * 20 19 18 42 42 H 1.09005 * 110.59469 * 80.81920 * 20 19 18 43 43 H 1.09003 * 110.03206 * 238.57057 * 21 17 8 44 44 H 1.09002 * 110.03282 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.9969 0.7810 -1.2482 6 6 3.9957 0.7816 1.2502 7 6 3.8255 2.9382 -0.0001 8 7 3.3868 3.5614 1.2511 9 6 2.1008 4.0151 1.3759 10 1 1.5986 3.9587 2.3303 11 6 1.4427 4.5473 0.2757 12 7 2.1343 5.0370 -0.7315 13 14 -0.4244 4.5688 0.2245 14 1 -0.9420 5.3601 1.3695 15 1 -0.8777 5.1856 -1.0481 16 1 -0.9380 3.1780 0.3115 17 6 4.3222 3.6937 2.3708 18 6 3.7579 2.9819 3.6176 19 6 4.1820 3.8919 4.7981 20 6 4.0175 5.3151 4.2098 21 6 4.4875 5.1766 2.7470 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.0834 0.8674 -1.2479 28 1 3.7158 -0.2721 -1.2482 29 1 3.5945 1.2644 -2.1385 30 1 3.5926 1.2653 2.1400 31 1 3.7146 -0.2716 1.2503 32 1 5.0823 0.8679 1.2509 33 1 3.3501 3.4408 -0.8425 34 1 4.9084 3.0253 -0.0892 35 1 1.6745 5.4093 -1.5001 36 1 5.2884 3.2667 2.1023 37 1 2.6716 2.9143 3.5595 38 1 4.1977 1.9901 3.7224 39 1 5.2198 3.7059 5.0749 40 1 3.5238 3.7497 5.6552 41 1 4.6464 6.0251 4.7469 42 1 2.9737 5.6272 4.2471 43 1 5.5342 5.4689 2.6619 44 1 3.8722 5.7978 2.0962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702663983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:36 Heat of formation + Delta-G solvation = -36.260432 kcal Electronic energy + Delta-G solvation = -21461.306727 eV Core-core repulsion = 18607.089912 eV Total energy + Delta-G solvation = -2854.216815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.52285 -37.26258 -34.24361 -32.31419 -30.57790 -29.80042 -27.94811 -26.93472 -26.45023 -25.45501 -22.77005 -21.55523 -19.94496 -19.12828 -18.88650 -16.36418 -15.62404 -14.98272 -14.86866 -14.76292 -14.11765 -14.01888 -13.45044 -12.95651 -12.81503 -12.49091 -12.37721 -11.97132 -11.82293 -11.45432 -11.35404 -11.13687 -10.93466 -10.87375 -10.60872 -10.58451 -10.51114 -10.28751 -10.18353 -10.11755 -9.99787 -9.78700 -9.62510 -9.46544 -9.20844 -8.52512 -8.24078 -6.38252 -5.54093 -3.07604 3.52989 3.57973 3.64955 4.58991 4.70752 5.36282 5.44929 5.48535 5.55764 5.58003 5.64677 5.75378 5.83094 5.86521 5.94061 6.03382 6.09663 6.10911 6.20511 6.29257 6.29837 6.33805 6.35827 6.45881 6.49469 6.58925 6.61473 6.63489 6.65178 6.72224 6.83270 6.92977 7.01586 7.09430 7.10475 7.23734 7.45995 7.85683 8.04975 8.35460 8.73961 9.40268 10.07083 10.59157 11.45212 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.010773 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.695507 B = 2598.584976 C = 3398.802794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.333 6.333 4 C 0.096 3.904 5 C -0.175 4.175 6 C -0.175 4.175 7 C 0.151 3.849 8 N -0.568 5.568 9 C -0.225 4.225 10 H 0.056 0.944 11 C 0.021 3.979 12 N -0.894 5.894 13 Si 0.890 3.110 14 H -0.289 1.289 15 H -0.297 1.297 16 H -0.280 1.280 17 C 0.172 3.828 18 C -0.137 4.137 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.134 4.134 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.108 0.892 34 H 0.034 0.966 35 H 0.250 0.750 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.038 0.962 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -7.296 3.727 8.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.251 6.251 4 C 0.054 3.946 5 C -0.233 4.233 6 C -0.232 4.232 7 C 0.024 3.976 8 N -0.286 5.286 9 C -0.355 4.355 10 H 0.074 0.926 11 C -0.178 4.178 12 N -0.538 5.538 13 Si 0.721 3.279 14 H -0.216 1.216 15 H -0.223 1.223 16 H -0.206 1.206 17 C 0.064 3.936 18 C -0.176 4.176 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.173 4.173 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.463 -7.026 3.560 8.604 hybrid contribution -0.806 -0.449 -0.116 0.930 sum 2.657 -7.475 3.444 8.648 Atomic orbital electron populations 1.21678 0.95027 1.00527 1.03096 1.22332 0.94683 0.87425 0.98474 1.88358 1.20244 1.22080 1.94432 1.22428 0.80955 0.99920 0.91343 1.22401 1.00824 0.99892 1.00155 1.22524 1.00088 0.99018 1.01601 1.21115 0.95294 0.87393 0.93778 1.43819 1.08774 1.65966 1.10054 1.18633 0.87871 1.32945 0.96019 0.92620 1.24806 0.97184 0.97437 0.98331 1.69900 1.33992 1.40668 1.09262 0.86581 0.87328 0.77821 0.76207 1.21626 1.22325 1.20610 1.21040 0.91665 0.92441 0.88451 1.22927 1.02368 0.96964 0.95341 1.22448 0.99611 0.96455 0.97623 1.22243 1.00746 0.95754 0.96733 1.22615 0.99062 1.00028 0.95593 0.92534 0.91985 0.92434 0.94849 0.94509 0.92627 0.93636 0.92209 0.89816 0.94641 0.93454 0.87439 0.94801 0.94013 0.93675 0.90514 0.93392 0.92847 0.93044 0.93600 0.91989 0.94305 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 10.28 37.16 0.38 -2.06 16 2 C 0.05 0.86 5.86 37.16 0.22 1.08 16 3 O -0.33 -7.33 9.16 -35.23 -0.32 -7.66 16 4 C 0.10 1.91 0.91 -90.62 -0.08 1.83 16 5 C -0.17 -2.99 8.25 37.16 0.31 -2.69 16 6 C -0.18 -3.13 7.60 37.16 0.28 -2.85 16 7 C 0.15 3.46 4.62 -4.04 -0.02 3.44 16 8 N -0.57 -13.33 1.88 -164.39 -0.31 -13.64 16 9 C -0.23 -5.91 7.19 -15.06 -0.11 -6.01 16 10 H 0.06 1.51 6.68 -52.49 -0.35 1.16 16 11 C 0.02 0.58 5.00 -17.43 -0.09 0.49 16 12 N -0.89 -25.51 11.26 55.49 0.62 -24.89 16 13 Si 0.89 22.37 29.61 -169.99 -5.03 17.34 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 17 C 0.17 3.49 2.57 -66.81 -0.17 3.32 16 18 C -0.14 -2.51 4.91 -25.03 -0.12 -2.64 16 19 C -0.12 -1.98 6.91 -24.70 -0.17 -2.15 16 20 C -0.12 -2.03 6.83 -25.08 -0.17 -2.20 16 21 C -0.13 -2.66 6.28 -25.61 -0.16 -2.82 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 26 H 0.04 0.62 6.41 -51.93 -0.33 0.29 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.70 6.54 -51.93 -0.34 0.36 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.62 4.10 -51.93 -0.21 1.41 16 31 H 0.03 0.58 6.54 -51.93 -0.34 0.24 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 2.86 5.32 -51.93 -0.28 2.59 16 34 H 0.03 0.73 7.82 -51.93 -0.41 0.32 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.04 0.88 7.76 -51.93 -0.40 0.48 16 37 H 0.08 1.60 6.33 -51.93 -0.33 1.27 16 38 H 0.05 0.82 7.03 -51.93 -0.36 0.45 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 2.01 7.35 -51.93 -0.38 1.63 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -27.81 326.60 -7.88 -35.69 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.86 Total: 1.51 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 0.10 Total: -13.27 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.32 Total: -38.53 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.32 Total: -7.66 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.81 -7.88 -35.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702663983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.572 kcal (2) G-P(sol) polarization free energy of solvation -27.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds