Wall clock time and date at job start Mon Mar 30 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47458 * 2 1 4 4 C 1.42900 * 113.99871 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47544 * 59.99790 * 4 3 2 6 6 C 1.52996 * 109.47273 * 299.99490 * 4 3 2 7 7 C 1.52999 * 109.46891 * 179.97438 * 4 3 2 8 8 N 1.46501 * 109.47288 * 64.99408 * 7 4 3 9 9 C 1.36935 * 120.00378 * 276.24262 * 8 7 4 10 10 H 1.07997 * 120.00027 * 146.00235 * 9 8 7 11 11 C 1.38810 * 120.00161 * 326.01605 * 9 8 7 12 12 N 1.31628 * 119.99786 * 336.91564 * 11 9 8 13 13 Si 1.86792 * 120.00569 * 156.91971 * 11 9 8 14 14 H 1.48497 * 109.47108 * 59.99674 * 13 11 9 15 15 H 1.48504 * 109.47623 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.47048 * 299.99937 * 13 11 9 17 17 C 1.46501 * 119.99758 * 95.96731 * 8 7 4 18 18 C 1.54262 * 110.03212 * 237.90832 * 17 8 7 19 19 C 1.54966 * 104.15821 * 217.13723 * 18 17 8 20 20 C 1.54883 * 102.77849 * 37.88747 * 19 18 17 21 21 C 1.53876 * 110.03050 * 120.69166 * 17 8 7 22 22 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47219 * 300.00718 * 1 2 3 24 24 H 1.09004 * 109.46621 * 60.00029 * 1 2 3 25 25 H 1.09001 * 109.47219 * 239.99282 * 2 1 3 26 26 H 1.08999 * 109.47279 * 119.99794 * 2 1 3 27 27 H 1.08994 * 109.47138 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47109 * 299.99917 * 5 4 3 29 29 H 1.09001 * 109.47171 * 59.99513 * 5 4 3 30 30 H 1.09005 * 109.47411 * 300.00587 * 6 4 3 31 31 H 1.09001 * 109.46810 * 59.99839 * 6 4 3 32 32 H 1.08994 * 109.47412 * 180.02562 * 6 4 3 33 33 H 1.08999 * 109.46968 * 304.99735 * 7 4 3 34 34 H 1.09000 * 109.47504 * 184.99886 * 7 4 3 35 35 H 0.96996 * 120.00362 * 180.02562 * 12 11 9 36 36 H 1.09001 * 110.01724 * 359.30310 * 17 8 7 37 37 H 1.08992 * 110.48993 * 335.78303 * 18 17 8 38 38 H 1.08997 * 110.48482 * 98.43339 * 18 17 8 39 39 H 1.09005 * 110.71953 * 279.57314 * 19 18 17 40 40 H 1.09000 * 110.92442 * 156.29883 * 19 18 17 41 41 H 1.09000 * 110.49138 * 203.40440 * 20 19 18 42 42 H 1.09005 * 110.59469 * 80.81920 * 20 19 18 43 43 H 1.09003 * 110.03206 * 238.57057 * 21 17 8 44 44 H 1.09002 * 110.03282 * 359.97438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.9969 0.7810 -1.2482 6 6 3.9957 0.7816 1.2502 7 6 3.8255 2.9382 -0.0001 8 7 3.3868 3.5614 1.2511 9 6 2.1008 4.0151 1.3759 10 1 1.5986 3.9587 2.3303 11 6 1.4427 4.5473 0.2757 12 7 2.1343 5.0370 -0.7315 13 14 -0.4244 4.5688 0.2245 14 1 -0.9420 5.3601 1.3695 15 1 -0.8777 5.1856 -1.0481 16 1 -0.9380 3.1780 0.3115 17 6 4.3222 3.6937 2.3708 18 6 3.7579 2.9819 3.6176 19 6 4.1820 3.8919 4.7981 20 6 4.0175 5.3151 4.2098 21 6 4.4875 5.1766 2.7470 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.0834 0.8674 -1.2479 28 1 3.7158 -0.2721 -1.2482 29 1 3.5945 1.2644 -2.1385 30 1 3.5926 1.2653 2.1400 31 1 3.7146 -0.2716 1.2503 32 1 5.0823 0.8679 1.2509 33 1 3.3501 3.4408 -0.8425 34 1 4.9084 3.0253 -0.0892 35 1 1.6745 5.4093 -1.5001 36 1 5.2884 3.2667 2.1023 37 1 2.6716 2.9143 3.5595 38 1 4.1977 1.9901 3.7224 39 1 5.2198 3.7059 5.0749 40 1 3.5238 3.7497 5.6552 41 1 4.6464 6.0251 4.7469 42 1 2.9737 5.6272 4.2471 43 1 5.5342 5.4689 2.6619 44 1 3.8722 5.7978 2.0962 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702663983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:36 Heat of formation + Delta-G solvation = -50.554874 kcal Electronic energy + Delta-G solvation = -21461.926581 eV Core-core repulsion = 18607.089912 eV Total energy + Delta-G solvation = -2854.836669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.11404 -38.80220 -35.94206 -34.00193 -32.38141 -31.26363 -29.44703 -28.50099 -27.86302 -27.36427 -24.40202 -23.14511 -21.36569 -20.75516 -20.51165 -18.19375 -17.30908 -16.57906 -16.46508 -16.28133 -15.89395 -15.66700 -15.09351 -14.54411 -14.27453 -14.01032 -13.99350 -13.34226 -13.22080 -13.11333 -12.81780 -12.72607 -12.67158 -12.55760 -12.47559 -12.18558 -12.04235 -11.92792 -11.85895 -11.71970 -11.57147 -11.34839 -11.20350 -11.12254 -10.87334 -10.29343 -10.02253 -8.35335 -7.58658 -5.14292 1.46473 1.50988 1.58244 2.65351 3.15268 3.48500 3.72482 4.02906 4.07260 4.18619 4.20355 4.29430 4.43675 4.50846 4.55580 4.58100 4.70171 4.74674 4.78014 4.80671 4.88357 4.95774 4.98297 4.99403 5.03777 5.09075 5.12616 5.23325 5.27331 5.27638 5.31329 5.38818 5.46286 5.63180 5.64496 5.68861 5.75009 5.87631 6.03987 6.63530 6.92218 7.39788 8.13018 8.58968 9.34739 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.010773 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.695507 B = 2598.584976 C = 3398.802794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 O -0.374 6.374 4 C 0.094 3.906 5 C -0.167 4.167 6 C -0.166 4.166 7 C 0.149 3.851 8 N -0.577 5.577 9 C -0.204 4.204 10 H 0.044 0.956 11 C -0.024 4.024 12 N -0.920 5.920 13 Si 0.928 3.072 14 H -0.287 1.287 15 H -0.304 1.304 16 H -0.282 1.282 17 C 0.165 3.835 18 C -0.128 4.128 19 C -0.112 4.112 20 C -0.114 4.114 21 C -0.132 4.132 22 H 0.094 0.906 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.241 0.759 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -9.288 5.314 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.293 6.293 4 C 0.052 3.948 5 C -0.225 4.225 6 C -0.223 4.223 7 C 0.022 3.978 8 N -0.296 5.296 9 C -0.335 4.335 10 H 0.062 0.938 11 C -0.219 4.219 12 N -0.567 5.567 13 Si 0.760 3.240 14 H -0.213 1.213 15 H -0.231 1.231 16 H -0.208 1.208 17 C 0.058 3.942 18 C -0.167 4.167 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.172 4.172 22 H 0.113 0.887 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.774 -9.034 5.170 11.451 hybrid contribution -1.163 0.148 -0.581 1.309 sum 3.611 -8.885 4.589 10.632 Atomic orbital electron populations 1.21707 0.94583 1.02488 1.01310 1.22525 0.95120 0.85829 0.99774 1.88294 1.21415 1.24828 1.94813 1.22293 0.80642 0.98095 0.93727 1.22308 1.01717 1.00529 0.97928 1.22400 1.00798 0.99591 0.99511 1.21006 0.95269 0.89334 0.92164 1.43926 1.08454 1.66134 1.11036 1.18612 0.89105 1.30683 0.95067 0.93850 1.25206 0.99306 0.98653 0.98756 1.70028 1.34420 1.42664 1.09621 0.85942 0.84963 0.77417 0.75673 1.21333 1.23128 1.20834 1.21262 0.91687 0.93011 0.88220 1.22775 1.00352 0.98272 0.95322 1.22419 1.01495 0.94204 0.96903 1.22207 0.99974 0.97671 0.95289 1.22539 0.99206 0.98919 0.96506 0.88698 0.93946 0.93977 0.93165 0.93245 0.90838 0.91550 0.93874 0.91425 0.92773 0.91896 0.91345 0.93990 0.94981 0.92386 0.93537 0.91584 0.90230 0.91506 0.91001 0.93973 0.92617 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 10.28 71.98 0.74 -3.88 16 2 C 0.04 1.50 5.86 71.98 0.42 1.92 16 3 O -0.37 -16.34 9.16 -148.98 -1.37 -17.71 16 4 C 0.09 3.64 0.91 -10.80 -0.01 3.63 16 5 C -0.17 -5.40 8.25 71.98 0.59 -4.80 16 6 C -0.17 -5.48 7.60 71.98 0.55 -4.93 16 7 C 0.15 6.86 4.62 86.38 0.40 7.25 16 8 N -0.58 -27.30 1.88 -674.02 -1.26 -28.56 16 9 C -0.20 -10.97 7.19 84.03 0.60 -10.37 16 10 H 0.04 2.42 6.68 -2.91 -0.02 2.41 16 11 C -0.02 -1.34 5.00 84.86 0.42 -0.91 16 12 N -0.92 -54.77 11.26 21.65 0.24 -54.53 16 13 Si 0.93 47.40 29.61 68.60 2.03 49.43 16 14 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 15 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16 16 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 17 C 0.16 6.51 2.57 45.71 0.12 6.63 16 18 C -0.13 -4.45 4.91 31.69 0.16 -4.30 16 19 C -0.11 -3.24 6.91 31.91 0.22 -3.02 16 20 C -0.11 -3.75 6.83 31.67 0.22 -3.53 16 21 C -0.13 -5.19 6.28 31.32 0.20 -4.99 16 22 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.05 1.52 6.42 -2.39 -0.02 1.50 16 26 H 0.05 1.53 6.41 -2.39 -0.02 1.52 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 1.85 6.54 -2.39 -0.02 1.84 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 2.46 4.10 -2.38 -0.01 2.45 16 31 H 0.05 1.57 6.54 -2.39 -0.02 1.56 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 3.78 5.32 -2.39 -0.01 3.77 16 34 H 0.04 1.80 7.82 -2.39 -0.02 1.78 16 35 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.06 2.13 7.76 -2.39 -0.02 2.12 16 37 H 0.05 1.90 6.33 -2.39 -0.02 1.89 16 38 H 0.07 2.05 7.03 -2.39 -0.02 2.03 16 39 H 0.08 1.93 8.14 -2.38 -0.02 1.92 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 44 H 0.04 1.82 7.35 -2.39 -0.02 1.81 16 Total: -1.00 -62.36 326.60 5.22 -57.14 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.95 Total: 15.54 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 4.63 Total: -21.31 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -1.02 Total: -83.09 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -1.37 Total: -17.71 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -62.36 5.22 -57.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702663983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.585 kcal (2) G-P(sol) polarization free energy of solvation -62.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds