Wall clock time and date at job start Mon Mar 30 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86798 * 119.99745 * 2 1 4 4 H 1.48501 * 109.47047 * 270.00188 * 3 2 1 5 5 H 1.48501 * 109.47228 * 29.99970 * 3 2 1 6 6 H 1.48497 * 109.47270 * 150.00208 * 3 2 1 7 7 C 1.39878 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00002 * 193.86733 * 7 2 1 9 9 C 1.41191 * 120.00109 * 13.86285 * 7 2 1 10 10 C 1.40847 * 120.17482 * 207.38942 * 9 7 2 11 11 C 1.36413 * 119.81075 * 180.02562 * 10 9 7 12 12 C 1.39351 * 120.18221 * 0.02562 * 11 10 9 13 13 O 1.35640 * 119.81971 * 180.02562 * 12 11 10 14 14 C 1.35725 * 117.99883 * 77.41966 * 13 12 11 15 15 N 1.32171 * 119.73035 * 358.23609 * 14 13 12 16 16 C 1.31985 * 121.72086 * 180.02562 * 15 14 13 17 17 C 1.38106 * 120.98427 * 359.97438 * 16 15 14 18 18 C 1.38736 * 119.35462 * 0.02562 * 17 16 15 19 19 C 1.38991 * 118.42434 * 359.72748 * 18 17 16 20 20 N 1.39889 * 120.51595 * 180.28877 * 19 18 17 21 21 C 1.39358 * 120.35972 * 0.03270 * 12 11 10 22 22 C 1.36406 * 120.18070 * 359.94985 * 21 12 11 23 23 H 0.97000 * 120.00616 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.09194 * 0.02562 * 10 9 7 25 25 H 1.08002 * 119.90596 * 180.29762 * 11 10 9 26 26 H 1.07998 * 119.50841 * 179.97438 * 16 15 14 27 27 H 1.07999 * 120.32276 * 180.02562 * 17 16 15 28 28 H 1.07996 * 120.79092 * 180.02562 * 18 17 16 29 29 H 0.97001 * 120.00009 * 180.24294 * 20 19 18 30 30 H 0.97001 * 120.00241 * 0.24858 * 20 19 18 31 31 H 1.08003 * 119.90659 * 179.97438 * 21 12 11 32 32 H 1.07999 * 120.09215 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4403 0.7000 7 6 2.0083 -1.2114 -0.0005 8 1 3.0646 -1.2250 0.2236 9 6 1.3333 -2.4162 -0.2940 10 6 1.8012 -3.6361 0.2319 11 6 1.1436 -4.7959 -0.0569 12 6 0.0122 -4.7759 -0.8702 13 8 -0.6363 -5.9333 -1.1521 14 6 -1.4436 -6.4604 -0.1968 15 7 -1.5478 -5.8615 0.9768 16 6 -2.3206 -6.3400 1.9338 17 6 -3.0560 -7.4934 1.7439 18 6 -2.9786 -8.1568 0.5279 19 6 -2.1610 -7.6275 -0.4637 20 7 -2.0550 -8.2574 -1.7082 21 6 -0.4565 -3.5732 -1.3954 22 6 0.1895 -2.4047 -1.1159 23 1 -0.4851 0.8400 0.0004 24 1 2.6782 -3.6533 0.8619 25 1 1.4983 -5.7315 0.3494 26 1 -2.3787 -5.8218 2.8796 27 1 -3.6853 -7.8752 2.5342 28 1 -3.5440 -9.0604 0.3541 29 1 -1.4795 -7.8835 -2.3936 30 1 -2.5572 -9.0681 -1.8859 31 1 -1.3339 -3.5662 -2.0252 32 1 -0.1752 -1.4734 -1.5234 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019258629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:37 Heat of formation + Delta-G solvation = 25.549826 kcal Electronic energy + Delta-G solvation = -17810.354655 eV Core-core repulsion = 14929.034953 eV Total energy + Delta-G solvation = -2881.319701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25747 -38.24378 -36.45042 -34.79861 -33.43281 -31.15360 -29.67371 -29.24405 -28.26292 -25.25399 -23.19058 -22.40518 -21.10242 -20.61971 -17.91008 -17.37396 -17.36144 -16.62029 -15.51286 -15.30762 -14.87628 -14.40742 -14.12487 -13.80678 -13.40326 -12.92486 -12.72566 -12.14812 -11.97640 -11.87061 -11.63988 -11.18304 -11.04970 -11.02554 -10.88927 -10.35267 -9.87695 -9.42738 -9.22238 -9.07551 -8.83009 -7.58860 -7.30327 -7.05529 -6.78557 -4.40634 1.66846 1.72860 2.54715 3.04722 3.07079 3.08455 3.09359 3.88998 3.98838 4.00285 4.28524 4.66777 5.02978 5.10892 5.34725 5.59601 5.74692 5.79979 6.09530 6.23452 6.28805 6.46202 6.72404 6.89492 7.01149 7.11469 7.24634 7.39529 7.55753 7.62628 7.90358 7.93397 7.99007 8.18133 8.38932 8.52027 8.66744 8.82216 8.98219 10.14410 Molecular weight = 256.10amu Principal moments of inertia in cm(-1) A = 0.039712 B = 0.004804 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.906534 B = 5826.538224 C = 6044.618076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.116 3.884 10 C -0.216 4.216 11 C -0.073 4.073 12 C -0.051 4.051 13 O -0.246 6.246 14 C 0.261 3.739 15 N -0.479 5.479 16 C 0.074 3.926 17 C -0.175 4.175 18 C -0.142 4.142 19 C 0.144 3.856 20 N -0.871 5.871 21 C -0.089 4.089 22 C -0.156 4.156 23 H 0.282 0.718 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.150 0.850 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.405 0.595 30 H 0.394 0.606 31 H 0.091 0.909 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.965 -10.254 -0.258 11.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.113 3.887 10 C -0.236 4.236 11 C -0.092 4.092 12 C -0.094 4.094 13 O -0.151 6.151 14 C 0.077 3.923 15 N -0.201 5.201 16 C -0.082 4.082 17 C -0.196 4.196 18 C -0.173 4.173 19 C 0.038 3.962 20 N -0.413 5.413 21 C -0.108 4.108 22 C -0.176 4.176 23 H 0.093 0.907 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.167 0.833 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.234 0.766 30 H 0.222 0.778 31 H 0.109 0.891 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.629 -9.369 -0.300 10.454 hybrid contribution -0.260 -0.094 -0.120 0.301 sum -4.889 -9.463 -0.420 10.659 Atomic orbital electron populations 1.69841 1.07553 1.29370 1.34731 1.25955 0.94819 1.01448 0.92316 0.86238 0.80398 0.80328 0.79342 1.19220 1.20232 1.18551 1.19622 0.96892 0.90779 1.41064 0.90166 1.17692 0.91043 0.92139 0.87786 1.20637 1.03862 0.92551 1.06548 1.20358 0.95356 0.96995 0.96443 1.18026 0.96330 0.83249 1.11792 1.84599 1.55465 1.38705 1.36363 1.20201 0.92750 0.90569 0.88748 1.67449 1.20036 1.32215 1.00356 1.22204 0.94140 0.94417 0.97444 1.21657 1.02630 0.97702 0.97640 1.20736 1.01681 1.01698 0.93165 1.17861 0.97364 0.92533 0.88425 1.42173 1.54616 1.31204 1.13284 1.20444 0.98538 0.91661 1.00202 1.20913 0.99446 0.96007 1.01192 0.90711 0.88505 0.89337 0.83306 0.85397 0.85212 0.76569 0.77834 0.89090 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.43 10.92 55.54 0.61 -19.83 16 2 C 0.07 1.81 5.20 -17.34 -0.09 1.72 16 3 Si 0.91 18.48 29.58 -169.99 -5.03 13.45 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.98 9.04 -37.85 -0.34 -12.32 16 8 H 0.08 2.02 7.88 -52.49 -0.41 1.60 16 9 C 0.12 3.12 5.55 -106.80 -0.59 2.53 16 10 C -0.22 -5.46 9.74 -39.25 -0.38 -5.84 16 11 C -0.07 -1.76 9.59 -39.83 -0.38 -2.14 16 12 C -0.05 -1.24 5.14 -38.75 -0.20 -1.44 16 13 O -0.25 -5.34 9.21 -2.27 -0.02 -5.36 16 14 C 0.26 5.21 7.43 -16.91 -0.13 5.08 16 15 N -0.48 -9.94 9.12 -13.15 -0.12 -10.06 16 16 C 0.07 1.23 11.17 -17.53 -0.20 1.04 16 17 C -0.18 -2.36 10.10 -39.45 -0.40 -2.76 16 18 C -0.14 -1.90 10.04 -39.12 -0.39 -2.29 16 19 C 0.14 2.28 6.81 -83.40 -0.57 1.71 16 20 N -0.87 -10.76 9.09 32.60 0.30 -10.47 16 21 C -0.09 -2.23 9.92 -39.83 -0.40 -2.62 16 22 C -0.16 -4.13 8.62 -39.26 -0.34 -4.47 16 23 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 24 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 25 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 26 H 0.15 2.13 8.06 -52.49 -0.42 1.70 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.41 5.12 8.22 -40.82 -0.34 4.78 16 30 H 0.39 3.53 8.86 -40.82 -0.36 3.16 16 31 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 32 H 0.12 3.30 6.23 -52.49 -0.33 2.98 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -29.80 285.41 -7.48 -37.28 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -3.11 Total: 12.49 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -4.40 Total: -21.81 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.78 Total: -40.35 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.02 Total: -5.36 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.80 -7.48 -37.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019258629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.829 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds