Wall clock time and date at job start Mon Mar 30 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39644 * 120.14872 * 208.46562 * 3 2 1 5 5 C 1.37926 * 119.84580 * 180.02562 * 4 3 2 6 6 C 1.38380 * 120.15267 * 0.02562 * 5 4 3 7 7 C 1.38350 * 120.30404 * 0.02562 * 6 5 4 8 8 C 1.37962 * 120.14981 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.08007 * 180.02562 * 8 7 6 10 10 N 1.46907 * 109.46886 * 268.97625 * 9 8 7 11 11 C 1.46899 * 110.99983 * 174.01601 * 10 9 8 12 12 C 1.50700 * 109.47046 * 196.13263 * 11 10 9 13 13 H 1.08000 * 119.99626 * 4.58207 * 12 11 10 14 14 C 1.37880 * 119.99719 * 184.58426 * 12 11 10 15 15 N 1.31505 * 120.00183 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99482 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47232 * 60.00470 * 16 14 12 18 18 H 1.48500 * 109.47111 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47632 * 300.00333 * 16 14 12 20 20 C 1.46900 * 110.99497 * 297.96637 * 10 9 8 21 21 C 1.53000 * 117.49802 * 146.24181 * 20 10 9 22 22 C 1.52994 * 117.50062 * 77.57804 * 20 10 9 23 23 H 1.07997 * 120.08047 * 0.04317 * 4 3 2 24 24 H 1.08000 * 119.92758 * 180.29899 * 5 4 3 25 25 H 1.07996 * 119.85088 * 179.97438 * 6 5 4 26 26 H 1.07998 * 119.92557 * 180.02562 * 7 6 5 27 27 H 1.09006 * 109.46806 * 28.96765 * 9 8 7 28 28 H 1.08995 * 109.47549 * 148.96840 * 9 8 7 29 29 H 1.09009 * 109.46975 * 316.12874 * 11 10 9 30 30 H 1.08998 * 109.47289 * 76.12717 * 11 10 9 31 31 H 0.97002 * 119.99822 * 179.97438 * 15 14 12 32 32 H 1.09007 * 115.54584 * 291.90494 * 20 10 9 33 33 H 1.09000 * 117.49680 * 359.97438 * 21 20 10 34 34 H 1.08999 * 117.49723 * 145.01605 * 21 20 10 35 35 H 1.09003 * 117.50029 * 214.97753 * 22 20 10 36 36 H 1.09000 * 117.50272 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2690 1.0625 0.5755 5 6 4.6482 1.0570 0.5716 6 6 5.3374 0.0027 -0.0014 7 6 4.6494 -1.0520 -0.5743 8 6 3.2698 -1.0593 -0.5773 9 6 2.5219 -2.2093 -1.2013 10 7 2.2566 -1.9112 -2.6151 11 6 1.6547 -3.0673 -3.2929 12 6 1.7594 -2.8852 -4.7852 13 1 2.2912 -2.0366 -5.1896 14 6 1.1763 -3.8019 -5.6341 15 7 0.5293 -4.8354 -5.1416 16 14 1.3055 -3.5757 -7.4838 17 1 2.7357 -3.5755 -7.8839 18 1 0.5997 -4.6882 -8.1690 19 1 0.6835 -2.2835 -7.8693 20 6 1.4076 -0.7202 -2.7516 21 6 1.6464 0.1824 -3.9637 22 6 2.0719 0.6457 -2.5682 23 1 2.7323 1.8860 1.0230 24 1 5.1916 1.8752 1.0206 25 1 6.4174 0.0035 -0.0021 26 1 5.1934 -1.8719 -1.0194 27 1 3.1225 -3.1160 -1.1277 28 1 1.5774 -2.3556 -0.6773 29 1 2.1819 -3.9753 -2.9998 30 1 0.6054 -3.1489 -3.0095 31 1 0.1187 -5.4801 -5.7388 32 1 0.3813 -0.8319 -2.4017 33 1 2.4337 -0.1073 -4.6596 34 1 0.7773 0.6649 -4.4109 35 1 1.4826 1.4329 -2.0979 36 1 3.1388 0.6607 -2.3457 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042359813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:47 Heat of formation + Delta-G solvation = 93.089817 kcal Electronic energy + Delta-G solvation = -18727.697750 eV Core-core repulsion = 15985.139897 eV Total energy + Delta-G solvation = -2742.557853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 256.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95960 -37.35384 -36.13605 -33.92495 -32.75700 -31.30348 -31.01585 -27.22510 -24.88668 -23.60020 -22.26807 -21.70671 -21.53592 -19.58673 -18.49248 -16.63965 -15.74554 -15.63473 -15.05411 -14.71336 -14.41975 -14.29555 -14.02237 -13.34383 -13.26825 -12.94876 -12.66253 -12.29521 -12.21028 -12.08142 -11.52268 -11.39189 -11.18840 -11.00275 -10.84535 -10.73738 -10.62789 -10.07506 -9.66172 -9.26127 -9.22456 -8.88071 -8.65855 -8.38851 -7.38811 -6.00160 -4.00607 0.86268 1.35690 2.88496 3.11144 3.34818 3.38819 3.41440 3.92830 4.06802 4.43973 4.50612 4.75574 4.84594 4.88473 4.97338 5.30610 5.35256 5.45092 5.60720 5.68379 5.69390 5.76431 5.96532 6.04769 6.11388 6.13231 6.26702 6.36700 6.42116 6.57077 6.65471 6.84303 6.85405 7.14043 7.33931 7.69658 7.80964 8.04645 8.14225 8.50729 9.06460 9.62891 11.10795 Molecular weight = 256.13amu Principal moments of inertia in cm(-1) A = 0.028209 B = 0.005934 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.368971 B = 4717.101925 C = 4887.914975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.262 3.738 3 C -0.017 4.017 4 C -0.079 4.079 5 C -0.130 4.130 6 C -0.095 4.095 7 C -0.103 4.103 8 C -0.013 4.013 9 C 0.082 3.918 10 N -0.500 5.500 11 C 0.196 3.804 12 C -0.499 4.499 13 H 0.067 0.933 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.028 3.972 21 C -0.147 4.147 22 C -0.186 4.186 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.088 0.912 28 H 0.033 0.967 29 H 0.029 0.971 30 H -0.004 1.004 31 H 0.261 0.739 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.515 10.636 11.053 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.053 4.053 3 C -0.021 4.021 4 C -0.099 4.099 5 C -0.148 4.148 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.016 4.016 9 C -0.046 4.046 10 N -0.224 5.224 11 C 0.072 3.928 12 C -0.537 4.537 13 H 0.085 0.915 14 C -0.147 4.147 15 N -0.541 5.541 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.081 4.081 21 C -0.184 4.184 22 C -0.224 4.224 23 H 0.145 0.855 24 H 0.145 0.855 25 H 0.144 0.856 26 H 0.152 0.848 27 H 0.106 0.894 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.014 0.986 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.075 10.535 10.759 17.087 hybrid contribution -0.459 -0.197 -0.723 0.879 sum 7.616 10.339 10.036 16.298 Atomic orbital electron populations 1.81220 1.12069 1.07434 1.09177 1.25593 0.92792 0.93858 0.93084 1.15942 0.84433 0.97457 1.04256 1.21050 0.94426 0.96575 0.97876 1.20976 0.93497 0.99129 1.01201 1.21347 1.00177 0.93488 0.96343 1.21019 0.92873 0.99331 0.98979 1.20019 0.93972 0.94313 0.93265 1.21149 0.97816 0.94939 0.90688 1.62095 1.46448 1.05681 1.08221 1.19751 0.92757 0.86195 0.94119 1.21116 1.33313 1.09199 0.90095 0.91529 1.24977 0.95425 0.95325 0.98950 1.69945 1.36095 1.13011 1.35080 0.86580 0.78187 0.77539 0.85218 1.20193 1.21455 1.20312 1.22144 0.94455 0.87833 1.03695 1.22872 1.02834 1.01716 0.91004 1.23197 1.01019 0.96872 1.01270 0.85527 0.85490 0.85584 0.84804 0.89378 0.94936 0.95317 0.98597 0.92942 0.91152 0.87916 0.89977 0.90424 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.63 18.03 41.84 0.75 -6.88 16 2 C 0.26 4.15 10.25 -22.47 -0.23 3.92 16 3 C -0.02 -0.23 3.47 -106.93 -0.37 -0.60 16 4 C -0.08 -0.81 9.76 -39.17 -0.38 -1.19 16 5 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 6 C -0.09 -0.87 10.04 -39.49 -0.40 -1.27 16 7 C -0.10 -1.21 9.68 -39.64 -0.38 -1.59 16 8 C -0.01 -0.18 3.79 -104.21 -0.39 -0.57 16 9 C 0.08 1.43 4.90 -4.97 -0.02 1.41 16 10 N -0.50 -10.52 4.60 -229.51 -1.06 -11.57 16 11 C 0.20 5.06 4.74 -4.98 -0.02 5.04 16 12 C -0.50 -13.80 8.56 -34.44 -0.29 -14.10 16 13 H 0.07 1.81 6.09 -52.49 -0.32 1.49 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 16 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.03 0.57 3.12 -67.72 -0.21 0.35 16 21 C -0.15 -2.80 9.52 -26.69 -0.25 -3.05 16 22 C -0.19 -3.10 6.68 -26.69 -0.18 -3.28 16 23 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 24 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 25 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 26 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.09 1.45 7.89 -51.93 -0.41 1.04 16 28 H 0.03 0.61 7.13 -51.93 -0.37 0.24 16 29 H 0.03 0.77 7.87 -51.92 -0.41 0.36 16 30 H 0.00 -0.11 8.05 -51.93 -0.42 -0.53 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 32 H 0.07 1.58 7.36 -51.93 -0.38 1.20 16 33 H 0.10 2.06 6.97 -51.93 -0.36 1.70 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.22 7.52 -51.93 -0.39 0.83 16 36 H 0.10 1.56 6.79 -51.93 -0.35 1.21 16 LS Contribution 301.13 15.07 4.54 4.54 Total: -1.00 -30.87 301.13 -8.35 -39.22 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.66 Total: -0.84 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -3.64 Total: -15.03 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.43 Total: -44.61 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.87 -8.35 -39.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.311 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds