Wall clock time and date at job start Mon Mar 30 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46804 * 2 1 4 4 C 1.50700 * 109.47228 * 119.99485 * 2 1 3 5 5 H 1.08000 * 120.00176 * 120.00044 * 4 2 1 6 6 C 1.37876 * 120.00240 * 300.00518 * 4 2 1 7 7 N 1.31518 * 119.99891 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00210 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47443 * 59.99790 * 8 6 4 10 10 H 1.48498 * 109.47240 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46848 * 299.99536 * 8 6 4 12 12 N 1.46898 * 109.47470 * 239.99788 * 2 1 3 13 13 C 1.46901 * 110.99587 * 298.85040 * 12 2 1 14 14 C 1.40349 * 111.00160 * 62.80018 * 12 2 1 15 15 C 1.38957 * 120.01346 * 267.80439 * 14 12 2 16 16 F 1.35098 * 120.00640 * 359.69388 * 15 14 12 17 17 C 1.38305 * 119.98523 * 179.97438 * 15 14 12 18 18 C 1.38852 * 120.01782 * 359.97438 * 17 15 14 19 19 N 1.39979 * 119.99108 * 180.02562 * 18 17 15 20 20 C 1.38857 * 120.02048 * 0.02562 * 18 17 15 21 21 C 1.38312 * 120.01087 * 0.02562 * 20 18 17 22 22 F 1.35096 * 120.00272 * 180.02562 * 21 20 18 23 23 H 1.08993 * 109.47292 * 302.40433 * 1 2 3 24 24 H 1.08994 * 109.47467 * 62.40974 * 1 2 3 25 25 H 1.09004 * 109.46884 * 182.40752 * 1 2 3 26 26 H 0.96997 * 120.00094 * 179.97438 * 7 6 4 27 27 H 1.09006 * 109.46691 * 161.51143 * 13 12 2 28 28 H 1.08993 * 109.47065 * 281.50623 * 13 12 2 29 29 H 1.09001 * 109.47582 * 41.51462 * 13 12 2 30 30 H 1.08001 * 119.99539 * 179.97438 * 17 15 14 31 31 H 0.97002 * 119.99762 * 180.02562 * 19 18 17 32 32 H 0.96993 * 120.00040 * 359.97438 * 19 18 17 33 33 H 1.07997 * 119.99031 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.8075 -1.1186 4.0079 10 1 1.8278 -0.4189 5.2205 11 1 1.8280 -2.5196 4.0083 12 7 2.0197 -0.6925 -1.1994 13 6 1.5713 -2.0913 -1.2195 14 6 1.6228 -0.0203 -2.3657 15 6 0.4394 -0.3733 -3.0028 16 9 -0.3262 -1.3680 -2.5032 17 6 0.0486 0.2899 -4.1518 18 6 0.8380 1.3087 -4.6685 19 7 0.4416 1.9799 -5.8311 20 6 2.0205 1.6619 -4.0322 21 6 2.4130 0.9986 -2.8837 22 9 3.5633 1.3427 -2.2644 23 1 -0.3633 0.5507 0.8676 24 1 -0.3634 0.4759 -0.9107 25 1 -0.3633 -1.0268 0.0432 26 1 0.7087 1.1615 3.4843 27 1 1.6535 -2.4846 -2.2328 28 1 2.1947 -2.6823 -0.5487 29 1 0.5330 -2.1448 -0.8922 30 1 -0.8709 0.0153 -4.6474 31 1 0.9932 2.6913 -6.1923 32 1 -0.3843 1.7330 -6.2759 33 1 2.6340 2.4546 -4.4342 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063086713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:38 Heat of formation + Delta-G solvation = -42.485148 kcal Electronic energy + Delta-G solvation = -19719.033458 eV Core-core repulsion = 16416.367104 eV Total energy + Delta-G solvation = -3302.666355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 256.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.70346 -48.29795 -39.09184 -37.07351 -33.77576 -32.41295 -29.98172 -29.05884 -27.64986 -25.19088 -24.66567 -22.54647 -21.91214 -19.68010 -17.87242 -17.56361 -16.28262 -16.06852 -15.83864 -15.51670 -15.07647 -14.76625 -14.71858 -14.68383 -14.15119 -13.46160 -12.81153 -12.54416 -12.53157 -12.37656 -12.07128 -11.48914 -11.11278 -11.05705 -10.86300 -10.58236 -10.57797 -10.28517 -10.01640 -9.68102 -8.89931 -8.43041 -8.38725 -7.89187 -6.89279 -5.99422 -4.03744 1.33603 1.60814 3.35455 3.39086 3.42367 3.63843 3.77587 4.42527 4.51985 4.73821 4.80510 5.16361 5.25751 5.33243 5.66950 5.92137 6.07407 6.14499 6.23376 6.40534 6.53111 6.68720 6.81976 6.90806 6.94724 7.09364 7.34130 7.56382 7.67627 7.69165 7.85186 8.06675 8.30738 8.58431 9.00025 9.60665 11.07974 Molecular weight = 256.11amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.006669 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.208329 B = 4197.391802 C = 4486.477510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.217 3.783 3 H 0.042 0.958 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.488 5.488 13 C 0.028 3.972 14 C 0.005 3.995 15 C 0.134 3.866 16 F -0.127 7.127 17 C -0.236 4.236 18 C 0.242 3.758 19 N -0.876 5.876 20 C -0.236 4.236 21 C 0.175 3.825 22 F -0.119 7.119 23 H 0.089 0.911 24 H 0.008 0.992 25 H 0.036 0.964 26 H 0.261 0.739 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.131 0.869 31 H 0.399 0.601 32 H 0.398 0.602 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 1.142 -15.139 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.113 3.887 3 H 0.060 0.940 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.206 5.206 13 C -0.119 4.119 14 C -0.095 4.095 15 C 0.111 3.889 16 F -0.105 7.105 17 C -0.260 4.260 18 C 0.137 3.863 19 N -0.416 5.416 20 C -0.260 4.260 21 C 0.153 3.847 22 F -0.097 7.097 23 H 0.108 0.892 24 H 0.027 0.973 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.227 0.773 32 H 0.227 0.773 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.433 1.192 -14.816 14.933 hybrid contribution -0.643 -0.337 0.706 1.012 sum -2.076 0.855 -14.110 14.288 Atomic orbital electron populations 1.22427 1.00054 1.00064 1.00275 1.19460 0.90129 0.94572 0.84531 0.93995 1.21028 1.30996 1.12675 0.89435 0.91816 1.24915 0.95133 0.95098 0.98991 1.69889 1.36844 1.22925 1.23598 0.86530 0.79246 0.79557 0.81897 1.20177 1.21371 1.20301 1.60076 1.57827 1.02390 1.00291 1.22570 1.00809 0.88872 0.99641 1.19031 0.92992 0.99600 0.97868 1.17587 0.88622 0.88524 0.94143 1.91489 1.74181 1.58120 1.86701 1.20315 1.03649 1.02092 0.99925 1.16879 0.91698 0.90699 0.86984 1.42353 1.28729 1.42312 1.28173 1.20321 0.99826 1.06745 0.99134 1.16767 0.82658 0.94462 0.90763 1.91519 1.45725 1.90728 1.81778 0.89246 0.97292 0.94493 0.92881 0.94047 0.91371 0.92782 0.85085 0.77272 0.77334 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 7.50 37.16 0.28 -3.99 16 2 C 0.22 5.69 2.34 -68.87 -0.16 5.53 16 3 H 0.04 1.23 8.13 -51.93 -0.42 0.80 16 4 C -0.50 -14.09 8.07 -34.44 -0.28 -14.36 16 5 H 0.06 1.77 6.76 -52.49 -0.35 1.42 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.85 11.34 55.43 0.63 -25.22 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.49 -11.29 4.61 -172.43 -0.80 -12.09 16 13 C 0.03 0.60 7.50 60.07 0.45 1.05 16 14 C 0.01 0.10 4.31 -83.43 -0.36 -0.26 16 15 C 0.13 2.43 5.24 -39.29 -0.21 2.23 16 16 F -0.13 -2.38 12.42 2.25 0.03 -2.35 16 17 C -0.24 -3.43 9.87 -39.33 -0.39 -3.82 16 18 C 0.24 3.16 6.76 -83.68 -0.57 2.59 16 19 N -0.88 -7.53 9.10 32.45 0.30 -7.23 16 20 C -0.24 -3.46 9.87 -39.33 -0.39 -3.84 16 21 C 0.18 3.28 7.30 -39.29 -0.29 3.00 16 22 F -0.12 -2.43 17.07 2.25 0.04 -2.39 16 23 H 0.09 2.46 6.14 -51.93 -0.32 2.14 16 24 H 0.01 0.19 5.96 -51.93 -0.31 -0.12 16 25 H 0.04 0.91 6.09 -51.93 -0.32 0.59 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.04 0.77 7.25 -51.93 -0.38 0.40 16 28 H 0.07 1.45 7.14 -51.93 -0.37 1.08 16 29 H 0.05 1.17 4.22 -51.93 -0.22 0.96 16 30 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.40 2.62 8.84 -40.82 -0.36 2.26 16 32 H 0.40 2.63 8.84 -40.82 -0.36 2.27 16 33 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 273.26 15.07 4.12 4.12 Total: -1.00 -30.55 273.26 -6.10 -36.65 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -3.39 Total: 2.17 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.00 Total: -10.29 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.13 Total: -44.55 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.75 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.55 -6.10 -36.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063086713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.836 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds